KCC002722A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002722A_C01 KCC002722A_c01
ccgatacttgagacgttacgaCTACCTTTAGCTGCCATTATAGACCACTGGGGTGCCAGG
GGGGACGAATAATTGGCGGTGTTGCTTTCCGTTGTCTTGACTCCGCACGTTCCAGTCGTG
GAGTCGTGCCTCCAAACCCCTTGCCGCCGGACGTCCACTTGAAGACACACCTCATATACG
GTCCAGCCAAAAATGCTCCCAGCGCTGGCCGGCCGGCTGGGCCGGCTTCGCGCCCTGAAG
ACGAATCGCATGCAGGCGCTCGGGGGCGCAGAATTCCACGTCAACTCCAGCGGCAACCCA
ACCAACTACGAGGAGGAGGACGAAGTCCCGCCCTACACCCCGGCGCTGCAGCACCCCGCC
TACGTGGTCCGCAAGACGGGTGTCGACCTGCTGCATGACCCTTGGTGCAATAAAGGGAGT
GCGTTCCCCAAGTCGGAGCGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002722A_C01 KCC002722A_c01
         (441 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_178980.1| malate oxidoreductase (malic enzyme), putative ...    45  3e-04
dbj|BAC86247.1| unnamed protein product [Homo sapiens]                 43  0.001
gb|AAG13628.1|AC078840_19 putative mitochondrial NAD+-dependent ...    42  0.002
sp|P37221|MAOM_SOLTU NAD-DEPENDENT MALIC ENZYME 62 KDA ISOFORM, ...    41  0.004
ref|NP_191966.2| malate oxidoreductase -related [Arabidopsis tha...    40  0.006

>ref|NP_178980.1| malate oxidoreductase (malic enzyme), putative [Arabidopsis
           thaliana] gi|25283678|pir||E84508 malate oxidoreductase
           (malic enzyme) [imported] - Arabidopsis thaliana
           gi|4558661|gb|AAD22679.1| malate oxidoreductase (malic
           enzyme) [Arabidopsis thaliana]
           gi|20268709|gb|AAM14058.1| putative malate
           oxidoreductase (malic enzyme) [Arabidopsis thaliana]
           gi|24030498|gb|AAN41396.1| putative malate
           oxidoreductase (malic enzyme) [Arabidopsis thaliana]
          Length = 623

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 19/39 (48%), Positives = 26/39 (65%)
 Frame = +1

Query: 325 VPPYTPALQHPAYVVRKTGVDLLHDPWCNKGSAFPKSER 441
           V  +T +  H   +V K G+D+LHDPW NKG+AF  +ER
Sbjct: 28  VRSFTTSEGHRPTIVHKQGLDILHDPWFNKGTAFTMTER 66

>dbj|BAC86247.1| unnamed protein product [Homo sapiens]
          Length = 321

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 31/87 (35%), Positives = 37/87 (41%)
 Frame = -3

Query: 436 PTWGTHSLYCTKGHAAGRHPSCGPRRRGAAAPGCRAGLRPPPRSWLGCRWS*RGILRPRA 257
           P  GT + +C    A     SCGP     + P  R  LRP P S        R     R+
Sbjct: 230 PPKGTETFFCVLPSALRAALSCGPSWGEDSGPRHRE-LRPDPDS--------RRASAERS 280

Query: 256 PACDSSSGREAGPAGRPALGAFLAGPY 176
           P C   S R+AGP  R A GA L G +
Sbjct: 281 PRCPPGSPRKAGPGRRDARGAALGGAF 307

>gb|AAG13628.1|AC078840_19 putative mitochondrial NAD+-dependent malic enzyme protein [Oryza
           sativa (japonica cultivar-group)]
           gi|31432926|gb|AAP54497.1| putative mitochondrial
           NAD+-dependent malic enzyme protein [Oryza sativa
           (japonica cultivar-group)]
          Length = 520

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 16/26 (61%), Positives = 20/26 (76%)
 Frame = +1

Query: 364 VVRKTGVDLLHDPWCNKGSAFPKSER 441
           +V K G D+LHDPW NK +AFP +ER
Sbjct: 23  IVHKRGTDILHDPWFNKDTAFPMTER 48

>sp|P37221|MAOM_SOLTU NAD-DEPENDENT MALIC ENZYME 62 KDA ISOFORM, MITOCHONDRIAL PRECURSOR
           (NAD-ME) gi|1076667|pir||B53318 malate dehydrogenase
           (decarboxylating) (EC 1.1.1.39) 62K chain precursor,
           mitochondrial - potato gi|438249|emb|CAA80559.1| malate
           dehydrogenase [Solanum tuberosum]
          Length = 626

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +1

Query: 334 YTPALQHPAYVVRKTGVDLLHDPWCNKGSAFPKSER 441
           +T    H   +V K  +D+LHDPW NKG+AF  +ER
Sbjct: 34  FTTTEGHRPTIVHKRSLDILHDPWFNKGTAFSFTER 69

>ref|NP_191966.2| malate oxidoreductase -related [Arabidopsis thaliana]
           gi|22136034|gb|AAM91599.1| putative malate
           oxidoreductase [Arabidopsis thaliana]
           gi|23197734|gb|AAN15394.1| putative malate
           oxidoreductase [Arabidopsis thaliana]
           gi|25083273|gb|AAN72057.1| putative malate
           oxidoreductase [Arabidopsis thaliana]
           gi|30725424|gb|AAP37734.1| At4g00570 [Arabidopsis
           thaliana]
          Length = 607

 Score = 40.4 bits (93), Expect = 0.006
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = +1

Query: 334 YTPALQHPAYVVRKTGVDLLHDPWCNKGSAFPKSER 441
           ++ A+  P  +V K G D+LHDPW NK + FP +ER
Sbjct: 25  FSTAIPGPC-IVHKRGADILHDPWFNKDTGFPLTER 59



EST assemble image


clone accession position
1 HCL098a07_r AV645083 1 441
2 MX229f12_r BP090828 22 308
3 MXL041d10_r BP095415 35 415




Chlamydomonas reinhardtii
Kazusa DNA Research Institute