KCC002721A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002721A_C01 KCC002721A_c01
ctgaacgggactaggcatctccgcgaccgtaaatgagcaaacccgctcgttttgaacggc
cgccGGGTCCCAAGGTCAAGGGCTACCGTGTTACAGTGTATGGCCTCCCCGAGACCTACA
CATGGAGGGAGCTGAAGGACTTTGTGGGCACCCAGACCAACGCCCAGCCGACCTACGCGA
ACATCGAGCGTCCTGGCGTCGGGTACTATACCGGGGTTTTGGTGGAGGACTCTATCGTTT
ATGAATGGGGTACTGGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002721A_C01 KCC002721A_c01
         (257 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_499649.2| serine/aRginine rich pre-mRNA SPlicing factor, ...    38  0.036
gb|AAG36874.1|AF242767_1 SF2 [Caenorhabditis elegans]                  38  0.036
pir||T42525 splicing factor-like protein - fission yeast  (Schiz...    35  0.40
ref|NP_594570.1| putative pre-mRNA splicing factor [Schizosaccha...    35  0.40
gb|AAH42354.1| Similar to splicing factor, arginine/serine-rich ...    35  0.40

>ref|NP_499649.2| serine/aRginine rich pre-mRNA SPlicing factor, SF2, substrate of
           the SR protein kinase SPK-1 (28.7 kD) (rsp-3)
           [Caenorhabditis elegans] gi|21615505|emb|CAC35847.2| C.
           elegans RSP-3 protein (corresponding sequence
           Y111B2A.18) [Caenorhabditis elegans]
          Length = 258

 Score = 38.1 bits (87), Expect = 0.036
 Identities = 23/59 (38%), Positives = 32/59 (53%), Gaps = 1/59 (1%)
 Frame = +3

Query: 57  RPPGPKVK-GYRVTVYGLPETYTWRELKDFVGTQTNAQPTYANIERPGVGYYTGVLVED 230
           R  GP+ + GYRV V GLP T +W++LKD +  +      YA++ R G G       ED
Sbjct: 113 RGGGPQRRTGYRVIVEGLPPTGSWQDLKDHM--RDAGDVCYADVARDGTGVVEFTRYED 169

>gb|AAG36874.1|AF242767_1 SF2 [Caenorhabditis elegans]
          Length = 258

 Score = 38.1 bits (87), Expect = 0.036
 Identities = 23/59 (38%), Positives = 32/59 (53%), Gaps = 1/59 (1%)
 Frame = +3

Query: 57  RPPGPKVK-GYRVTVYGLPETYTWRELKDFVGTQTNAQPTYANIERPGVGYYTGVLVED 230
           R  GP+ + GYRV V GLP T +W++LKD +  +      YA++ R G G       ED
Sbjct: 113 RGGGPQRRTGYRVIVEGLPPTGSWQDLKDHM--RDAGDVCYADVARDGTGVVEFTRYED 169

>pir||T42525 splicing factor-like protein - fission yeast  (Schizosaccharomyces
           pombe) (fragment) gi|1749534|dbj|BAA13825.1| unnamed
           protein product [Schizosaccharomyces pombe]
          Length = 361

 Score = 34.7 bits (78), Expect = 0.40
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 63  PGPKVKGYRVTVYGLPETYTWRELKDFVGTQTNAQPTYANIERPGVG 203
           P P+  G+R+ V  L E  +W++LKD +        T A+ E PG G
Sbjct: 87  PRPRRTGFRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAG 133

>ref|NP_594570.1| putative pre-mRNA splicing factor [Schizosaccharomyces pombe]
           gi|26399937|sp|P78814|SRP2_SCHPO Pre-mRNA splicing
           factor srp2 gi|7492839|pir||T37730 probable pre-mRNA
           splicing factor - fission yeast  (Schizosaccharomyces
           pombe) gi|2749972|gb|AAC39357.1| putative pre-mRNA
           splicing factor [Schizosaccharomyces pombe]
           gi|6013092|emb|CAB57400.1| srp2 [Schizosaccharomyces
           pombe]
          Length = 365

 Score = 34.7 bits (78), Expect = 0.40
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 63  PGPKVKGYRVTVYGLPETYTWRELKDFVGTQTNAQPTYANIERPGVG 203
           P P+  G+R+ V  L E  +W++LKD +        T A+ E PG G
Sbjct: 91  PRPRRTGFRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAG 137

>gb|AAH42354.1| Similar to splicing factor, arginine/serine-rich 1 (splicing factor
           2, alternate splicing factor) [Xenopus laevis]
          Length = 283

 Score = 34.7 bits (78), Expect = 0.40
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = +3

Query: 63  PGPKVKGYRVTVYGLPETYTWRELKDFVGTQTNAQPTYANIERPGVGYYTGVLVED 230
           P  +   YRV V GLP + +W++LKD +  +      YA++ R G G    V  ED
Sbjct: 149 PPSRRSEYRVVVSGLPPSGSWQDLKDHM--REAGDVCYADVFRDGTGVVEFVRKED 202



EST assemble image


clone accession position
1 HCL097g06_r AV645069 1 257
2 HCL097g05_r AV645068 65 253




Chlamydomonas reinhardtii
Kazusa DNA Research Institute