Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002721A_C01 KCC002721A_c01
(257 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_499649.2| serine/aRginine rich pre-mRNA SPlicing factor, ... 38 0.036
gb|AAG36874.1|AF242767_1 SF2 [Caenorhabditis elegans] 38 0.036
pir||T42525 splicing factor-like protein - fission yeast (Schiz... 35 0.40
ref|NP_594570.1| putative pre-mRNA splicing factor [Schizosaccha... 35 0.40
gb|AAH42354.1| Similar to splicing factor, arginine/serine-rich ... 35 0.40
>ref|NP_499649.2| serine/aRginine rich pre-mRNA SPlicing factor, SF2, substrate of
the SR protein kinase SPK-1 (28.7 kD) (rsp-3)
[Caenorhabditis elegans] gi|21615505|emb|CAC35847.2| C.
elegans RSP-3 protein (corresponding sequence
Y111B2A.18) [Caenorhabditis elegans]
Length = 258
Score = 38.1 bits (87), Expect = 0.036
Identities = 23/59 (38%), Positives = 32/59 (53%), Gaps = 1/59 (1%)
Frame = +3
Query: 57 RPPGPKVK-GYRVTVYGLPETYTWRELKDFVGTQTNAQPTYANIERPGVGYYTGVLVED 230
R GP+ + GYRV V GLP T +W++LKD + + YA++ R G G ED
Sbjct: 113 RGGGPQRRTGYRVIVEGLPPTGSWQDLKDHM--RDAGDVCYADVARDGTGVVEFTRYED 169
>gb|AAG36874.1|AF242767_1 SF2 [Caenorhabditis elegans]
Length = 258
Score = 38.1 bits (87), Expect = 0.036
Identities = 23/59 (38%), Positives = 32/59 (53%), Gaps = 1/59 (1%)
Frame = +3
Query: 57 RPPGPKVK-GYRVTVYGLPETYTWRELKDFVGTQTNAQPTYANIERPGVGYYTGVLVED 230
R GP+ + GYRV V GLP T +W++LKD + + YA++ R G G ED
Sbjct: 113 RGGGPQRRTGYRVIVEGLPPTGSWQDLKDHM--RDAGDVCYADVARDGTGVVEFTRYED 169
>pir||T42525 splicing factor-like protein - fission yeast (Schizosaccharomyces
pombe) (fragment) gi|1749534|dbj|BAA13825.1| unnamed
protein product [Schizosaccharomyces pombe]
Length = 361
Score = 34.7 bits (78), Expect = 0.40
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 63 PGPKVKGYRVTVYGLPETYTWRELKDFVGTQTNAQPTYANIERPGVG 203
P P+ G+R+ V L E +W++LKD + T A+ E PG G
Sbjct: 87 PRPRRTGFRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAG 133
>ref|NP_594570.1| putative pre-mRNA splicing factor [Schizosaccharomyces pombe]
gi|26399937|sp|P78814|SRP2_SCHPO Pre-mRNA splicing
factor srp2 gi|7492839|pir||T37730 probable pre-mRNA
splicing factor - fission yeast (Schizosaccharomyces
pombe) gi|2749972|gb|AAC39357.1| putative pre-mRNA
splicing factor [Schizosaccharomyces pombe]
gi|6013092|emb|CAB57400.1| srp2 [Schizosaccharomyces
pombe]
Length = 365
Score = 34.7 bits (78), Expect = 0.40
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 63 PGPKVKGYRVTVYGLPETYTWRELKDFVGTQTNAQPTYANIERPGVG 203
P P+ G+R+ V L E +W++LKD + T A+ E PG G
Sbjct: 91 PRPRRTGFRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAG 137
>gb|AAH42354.1| Similar to splicing factor, arginine/serine-rich 1 (splicing factor
2, alternate splicing factor) [Xenopus laevis]
Length = 283
Score = 34.7 bits (78), Expect = 0.40
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +3
Query: 63 PGPKVKGYRVTVYGLPETYTWRELKDFVGTQTNAQPTYANIERPGVGYYTGVLVED 230
P + YRV V GLP + +W++LKD + + YA++ R G G V ED
Sbjct: 149 PPSRRSEYRVVVSGLPPSGSWQDLKDHM--REAGDVCYADVFRDGTGVVEFVRKED 202