KCC002719A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002719A_C01 KCC002719A_c01
gcgcgactccattgaccggttttgtgaatccattcgtccctttaactgggccgcccttcg
cgtacaagccctgcactgcgCAAAGATAGCGGCAGATTAGTTCGCTCTAGAGATAACAGC
ACTGCGATAACAGTCATATAGTACTAAGCGCTGGGTTCTATCTTTGGCGCCACCGGCTCG
GACCGTGGTTTCTGTCTGGCGCCTCGGAGCTTACGCCGCGTGTTTCCACTGCCTCTGGCA
GCCTACAGCCATATCGAGACATTTTTCCGCAAAGCAGGGCGCATACAAGCTCGCGTCCTG
AACAGAAGCGAGTAGCGGTGTTGTTGGGCCTCAAGCATTTCGACCAGCTGGCAGCAGCGC
AGATTATAAGCTGCATAGTCACGGAGGCATGCCTGCCGATAAACCACGACTGCTTATCCT
TGGTGGCGGACCCGCTGGAGTCATCCTTGCTCAGCGCTGCTGTTCAAGCTTCGTAGTGAC
CCTCGTCGACCCTAAGGAGTACTTTGAGATCACATGGGCCACGCCACGCGGCCTGATGGA
CCCCCGGGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002719A_C01 KCC002719A_c01
         (550 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC42443.1| unknown protein [Arabidopsis thaliana]                 54  2e-06
ref|NP_680200.1| pyridine nucleotide-disulphide oxidoreductase f...    54  2e-06
ref|NP_190005.1| pyridine nucleotide-disulphide oxidoreductase f...    48  1e-04
pir||E85359 hypothetical protein AT4g30720 [imported] - Arabidop...    35  0.87
ref|NP_194801.2| expressed protein [Arabidopsis thaliana]              35  0.87

>dbj|BAC42443.1| unknown protein [Arabidopsis thaliana]
          Length = 365

 Score = 53.5 bits (127), Expect = 2e-06
 Identities = 23/47 (48%), Positives = 35/47 (73%)
 Frame = +2

Query: 407 RLLILGGGPAGVILAQRCCSSFVVTLVDPKEYFEITWATPRGLMDPR 547
           R++++GGG AG + A+       VTL+DPKEYFEITWA+ R +++P+
Sbjct: 13  RVVVIGGGIAGSLAAKLLQFDAEVTLIDPKEYFEITWASLRSMVEPK 59

>ref|NP_680200.1| pyridine nucleotide-disulphide oxidoreductase family [Arabidopsis
           thaliana] gi|13374873|emb|CAC34507.1| putative protein
           [Arabidopsis thaliana]
          Length = 365

 Score = 53.5 bits (127), Expect = 2e-06
 Identities = 23/47 (48%), Positives = 35/47 (73%)
 Frame = +2

Query: 407 RLLILGGGPAGVILAQRCCSSFVVTLVDPKEYFEITWATPRGLMDPR 547
           R++++GGG AG + A+       VTL+DPKEYFEITWA+ R +++P+
Sbjct: 13  RVVVIGGGIAGSLAAKLLQFDAEVTLIDPKEYFEITWASLRSMVEPK 59

>ref|NP_190005.1| pyridine nucleotide-disulphide oxidoreductase family [Arabidopsis
           thaliana] gi|11357666|pir||T49135 hypothetical protein
           F26G5.140 - Arabidopsis thaliana
           gi|7635464|emb|CAB88427.1| putative protein [Arabidopsis
           thaliana] gi|21536882|gb|AAM61214.1| unknown
           [Arabidopsis thaliana] gi|25083044|gb|AAN72037.1|
           putative protein [Arabidopsis thaliana]
           gi|30725576|gb|AAP37810.1| At3g44190 [Arabidopsis
           thaliana]
          Length = 367

 Score = 47.8 bits (112), Expect = 1e-04
 Identities = 20/46 (43%), Positives = 33/46 (71%)
 Frame = +2

Query: 407 RLLILGGGPAGVILAQRCCSSFVVTLVDPKEYFEITWATPRGLMDP 544
           R++++GGG AG + ++       +TL+DPKEYFEI WA+ R +++P
Sbjct: 13  RVIVIGGGIAGSLASKFLQFDSDLTLIDPKEYFEIIWASLRSMVEP 58

>pir||E85359 hypothetical protein AT4g30720 [imported] - Arabidopsis thaliana
           gi|5725436|emb|CAB52445.1| putative protein [Arabidopsis
           thaliana] gi|7269973|emb|CAB79790.1| putative protein
           [Arabidopsis thaliana]
          Length = 761

 Score = 34.7 bits (78), Expect = 0.87
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +2

Query: 302 TEASSGVVGPQAFRPAGSSADYKLHSHGGMPADKPRLLILGGGPAGVILA 451
           +E +SG   PQ    +G       H HGG    KP++ ++GGGP+G+  A
Sbjct: 243 SETASGEYEPQIINGSGDP-----HHHGG-GRSKPKIAVVGGGPSGLFAA 286

>ref|NP_194801.2| expressed protein [Arabidopsis thaliana]
          Length = 757

 Score = 34.7 bits (78), Expect = 0.87
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +2

Query: 302 TEASSGVVGPQAFRPAGSSADYKLHSHGGMPADKPRLLILGGGPAGVILA 451
           +E +SG   PQ    +G       H HGG    KP++ ++GGGP+G+  A
Sbjct: 239 SETASGEYEPQIINGSGDP-----HHHGG-GRSKPKIAVVGGGPSGLFAA 282



EST assemble image


clone accession position
1 HCL097e11_r AV645055 1 550
2 MXL072g08_r BP097269 131 503
3 LCL049f08_r AV628965 166 459




Chlamydomonas reinhardtii
Kazusa DNA Research Institute