Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002718A_C01 KCC002718A_c01
(468 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_004566.1| POU domain, class 4, transcription factor 2; Br... 51 8e-06
gb|AAO52342.1| similar to Y51A2D.19.p [Caenorhabditis elegans] [... 50 1e-05
ref|XP_320096.1| ENSANGP00000018343 [Anopheles gambiae] gi|30174... 50 1e-05
ref|NP_187692.1| zinc finger (C3HC4-type RING finger) protein fa... 49 4e-05
gb|AAL61641.1|AF434665_1 Hox1w [Petromyzon marinus] 49 4e-05
>ref|NP_004566.1| POU domain, class 4, transcription factor 2; Brn3b POU domain
transcription factor [Homo sapiens]
gi|2495300|sp|Q12837|PO42_HUMAN POU domain, class 4,
transcription factor 2 (Brain-specific homeobox/POU
domain protein 3B) (Brn-3B) gi|2135175|pir||I38502 gene
Brn-3b protein - human gi|458391|gb|AAA16509.1| Brn-3b
Length = 410
Score = 50.8 bits (120), Expect = 8e-06
Identities = 20/40 (50%), Positives = 21/40 (52%)
Frame = +3
Query: 210 PCSSCWLRPSSPILDTCGCTCACHHHHHHHHHHHHHHGLL 329
PC+S S PI C HHHHHHHHHHH H L
Sbjct: 150 PCTSAASSSSVPISHPCALAGTHHHHHHHHHHHHQPHQAL 189
>gb|AAO52342.1| similar to Y51A2D.19.p [Caenorhabditis elegans] [Dictyostelium
discoideum]
Length = 1290
Score = 50.1 bits (118), Expect = 1e-05
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3
Query: 279 HHHHHHHHHHHHHHG 323
HHHHHHHHHHHHHHG
Sbjct: 1196 HHHHHHHHHHHHHHG 1210
Score = 46.2 bits (108), Expect = 2e-04
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +3
Query: 279 HHHHHHHHHHHHHHG 323
HHHHHHHHHHHHH G
Sbjct: 1197 HHHHHHHHHHHHHGG 1211
Score = 45.1 bits (105), Expect = 4e-04
Identities = 13/14 (92%), Positives = 14/14 (99%)
Frame = +3
Query: 279 HHHHHHHHHHHHHH 320
+HHHHHHHHHHHHH
Sbjct: 1195 NHHHHHHHHHHHHH 1208
Score = 42.0 bits (97), Expect = 0.004
Identities = 17/37 (45%), Positives = 20/37 (53%)
Frame = +3
Query: 204 LAPCSSCWLRPSSPILDTCGCTCACHHHHHHHHHHHH 314
L+P S + + L G HHHHHHHHHHHH
Sbjct: 1173 LSPSRSFGYKGFNSRLSQSGIWNHHHHHHHHHHHHHH 1209
Score = 38.9 bits (89), Expect = 0.030
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 279 HHHHHHHHHHHHHHGLLP 332
HHHHHHHHHHH + + P
Sbjct: 1199 HHHHHHHHHHHGGNHINP 1216
>ref|XP_320096.1| ENSANGP00000018343 [Anopheles gambiae] gi|30174420|gb|EAA15096.2|
ENSANGP00000018343 [Anopheles gambiae str. PEST]
Length = 630
Score = 50.1 bits (118), Expect = 1e-05
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3
Query: 279 HHHHHHHHHHHHHHG 323
HHHHHHHHHHHHHHG
Sbjct: 301 HHHHHHHHHHHHHHG 315
Score = 36.2 bits (82), Expect = 0.19
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 279 HHHHHHHHHHHHHHGLLPLLH 341
HHHHHHHHHH L +H
Sbjct: 305 HHHHHHHHHHGQAKQQLTTVH 325
>ref|NP_187692.1| zinc finger (C3HC4-type RING finger) protein family [Arabidopsis
thaliana] gi|6630549|gb|AAF19568.1|AC011708_11 putative
RING zinc finger protein [Arabidopsis thaliana]
Length = 684
Score = 48.5 bits (114), Expect = 4e-05
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +3
Query: 279 HHHHHHHHHHHHHHGLLP 332
HHHHHH+HHHHHHH L P
Sbjct: 530 HHHHHHNHHHHHHHNLSP 547
Score = 47.8 bits (112), Expect = 6e-05
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +3
Query: 279 HHHHHHHHHHHHHH 320
HHHHHHHHHHHHHH
Sbjct: 520 HHHHHHHHHHHHHH 533
Score = 47.8 bits (112), Expect = 6e-05
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +3
Query: 279 HHHHHHHHHHHHHH 320
HHHHHHHHHHHHHH
Sbjct: 521 HHHHHHHHHHHHHH 534
Score = 47.8 bits (112), Expect = 6e-05
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +3
Query: 279 HHHHHHHHHHHHHH 320
HHHHHHHHHHHHHH
Sbjct: 522 HHHHHHHHHHHHHH 535
Score = 47.8 bits (112), Expect = 6e-05
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +3
Query: 279 HHHHHHHHHHHHHH 320
HHHHHHHHHHHHHH
Sbjct: 519 HHHHHHHHHHHHHH 532
Score = 45.1 bits (105), Expect = 4e-04
Identities = 13/14 (92%), Positives = 14/14 (99%)
Frame = +3
Query: 279 HHHHHHHHHHHHHH 320
HHHHHHHHHHHH+H
Sbjct: 524 HHHHHHHHHHHHNH 537
Score = 45.1 bits (105), Expect = 4e-04
Identities = 13/14 (92%), Positives = 14/14 (99%)
Frame = +3
Query: 279 HHHHHHHHHHHHHH 320
HHHHHHHHHHHHH+
Sbjct: 523 HHHHHHHHHHHHHN 536
Score = 45.1 bits (105), Expect = 4e-04
Identities = 13/14 (92%), Positives = 14/14 (99%)
Frame = +3
Query: 279 HHHHHHHHHHHHHH 320
HHHHHHHHHHH+HH
Sbjct: 525 HHHHHHHHHHHNHH 538
Score = 40.8 bits (94), Expect = 0.008
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +3
Query: 279 HHHHHHHHHHHHHH 320
H HHHHHHHHHHH
Sbjct: 516 HSKHHHHHHHHHHH 529
>gb|AAL61641.1|AF434665_1 Hox1w [Petromyzon marinus]
Length = 404
Score = 48.5 bits (114), Expect = 4e-05
Identities = 22/43 (51%), Positives = 25/43 (57%), Gaps = 3/43 (6%)
Frame = +3
Query: 201 CLAPCSSCWLRPS---SPILDTCGCTCACHHHHHHHHHHHHHH 320
CLAP SC + + S + D G HHHHHHH HHHHHH
Sbjct: 44 CLAPFQSCAVSAAAGASGVGDGEGRYHNHHHHHHHHPHHHHHH 86
