KCC002714A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002714A_C01 KCC002714A_c01
CATAAACAGATATTTACGTGTGTGCCCCGCTGACCCGCGCGCGACGCGAGCAGTTGAACA
ATTGCGACGCCCTCTAGCCACTGGAACCACATTGTAATATTGCTTGATGCAAAGTGATGG
CTTCCGTGCAGTCCTTTTCGCCCTCCAGCGGGCTACATTCCATCACTGTTGACAGCCAAT
TGGCCGCGCAGCACCTGGCAAAAAACAACGATGGGCGCGAGAACGTCTTCCAACGTGTAG
CGCCCGGAGAAGCGCTGGGCAGCTCCAACGACCAAGTCGTCGTGGTTAAAAACTCCAGCT
GCTCAAAAATAGACCTGCTCATCGCGGACCTGGTGTACCGCGTGGACGAGGATTTAGTGA
AGGCTCTCAACACCTTTTTGCTGCACGAGGAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002714A_C01 KCC002714A_c01
         (392 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00007670.1| COG2370: Hydrogenase/urease accessory protein...    34  0.43
emb|CAD21148.1| conserved hypothetical protein [Neurospora crassa]     33  1.3
ref|XP_322657.1| predicted protein [Neurospora crassa] gi|289179...    33  1.3
ref|NP_068239.1| PxORF20 peptide [Plutella xylostella granulovir...    32  1.6
ref|ZP_00138293.1| hypothetical protein [Pseudomonas aeruginosa ...    32  1.6

>ref|ZP_00007670.1| COG2370: Hydrogenase/urease accessory protein [Rhodobacter
           sphaeroides]
          Length = 304

 Score = 34.3 bits (77), Expect = 0.43
 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 176 PIGRAAP-GKKQRWARERLPTCSARRSAGQLQR-PSRRG*KLQLLKNRPAHRGPGVPRGR 349
           P  RA P    Q W    LP     R A  L+R P+RRG + + L+  PA    G PRG 
Sbjct: 19  PARRARPLDPHQGWPDRELPV----RGAHHLERQPARRGRQHRRLRGEPARHQDGAPRGA 74

Query: 350 G 352
           G
Sbjct: 75  G 75

>emb|CAD21148.1| conserved hypothetical protein [Neurospora crassa]
          Length = 464

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +2

Query: 188 AAPGKKQRWARERLPTCSARRSA--GQLQRPSRRG*KLQLLKNRPAHRGPGVPRGRGFSE 361
           AAP   Q WA +   T  A   A  G      +RG + Q  + R  +RG G  RGRG   
Sbjct: 384 AAPSNTQSWADDHPETAGAPTGADDGFQSVQGKRGPQQQGYRGRGGYRGRGDGRGRGRGR 443

Query: 362 G 364
           G
Sbjct: 444 G 444

>ref|XP_322657.1| predicted protein [Neurospora crassa] gi|28917925|gb|EAA27610.1|
           predicted protein [Neurospora crassa]
          Length = 471

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +2

Query: 188 AAPGKKQRWARERLPTCSARRSA--GQLQRPSRRG*KLQLLKNRPAHRGPGVPRGRGFSE 361
           AAP   Q WA +   T  A   A  G      +RG + Q  + R  +RG G  RGRG   
Sbjct: 391 AAPSNTQSWADDHPETAGAPTGADDGFQSVQGKRGPQQQGYRGRGGYRGRGDGRGRGRGR 450

Query: 362 G 364
           G
Sbjct: 451 G 451

>ref|NP_068239.1| PxORF20 peptide [Plutella xylostella granulovirus]
           gi|11036815|gb|AAG27318.1|AF270937_20 PxORF20 peptide
           [Plutella xylostella granulovirus]
          Length = 235

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -3

Query: 387 RAAKRC*EPSLNPRPRGTPGPR*AGLFLSSWSF*PRRLGRWSCPALLR--ALHVGRRSRA 214
           R+A RC  P   P PR  P PR            PRR     CP+  R  + HVGRR  +
Sbjct: 92  RSAPRCPSPRRCPSPRRCPSPRRCPS--------PRR-----CPSPRRCPSPHVGRRRSS 138

Query: 213 HRCFLP 196
            RC  P
Sbjct: 139 RRCPSP 144

>ref|ZP_00138293.1| hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 379

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = +1

Query: 160 PSLLTANWPRST---WQKTTMGARTSSNV*RPEKRWAAPTTKSSWLKTPAAQK*TCSSRT 330
           P+  +  WP +T   W  T     ++  V R     +AP   S   +TP      CSS  
Sbjct: 5   PTTSSCGWPATTCTTWATTRATCASAPAVWRRSPTTSAPMATSRAGRTPG-----CSSSP 59

Query: 331 WCTAWT 348
           W T WT
Sbjct: 60  WATPWT 65



EST assemble image


clone accession position
1 MXL069b02_r BP097042 1 481
2 HCL096c10_r AV644978 105 476




Chlamydomonas reinhardtii
Kazusa DNA Research Institute