Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002703A_C01 KCC002703A_c01
(384 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC94894.1| SI:bZ20I5.2 (novel protein similar to rat steroi... 35 0.20
sp|Q99087|LDL1_XENLA Low-density lipoprotein receptor 1 precurso... 33 1.3
pir||QRXLL1 LDL receptor 1 precursor - African clawed frog 33 1.3
ref|XP_352004.1| similar to RIKEN cDNA 5730427C23 [Homo sapiens] 32 1.7
ref|XP_344234.1| similar to genomic screen homeobox protein 2 [R... 32 2.2
>emb|CAC94894.1| SI:bZ20I5.2 (novel protein similar to rat steroid sensitive gene-1
protein (SSG-1)) [Danio rerio]
Length = 867
Score = 35.4 bits (80), Expect = 0.20
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Frame = +1
Query: 85 AAGQPTTTLTSLLAIHEVVVSPLATRR*LPTKVYT-----KPHS*TSRTHTTPGCT--TT 243
A +PTTT T+ A P T R T T +P + T+RT TTP T T
Sbjct: 309 APTRPTTTTTTTKATTTTTTRPPTTTRSTTTTTTTTTTTTRPTTTTTRTTTTPRTTRANT 368
Query: 244 HPAFYPHDPKLAFTLYFNSRPAAHPTS 324
P + P A Y+N R TS
Sbjct: 369 TPQWIPAHKTTAEPYYYNRRDRYQTTS 395
>sp|Q99087|LDL1_XENLA Low-density lipoprotein receptor 1 precursor (LDL receptor 1)
gi|214574|gb|AAA49897.1| low density lipoprotein
receptor-1
Length = 909
Score = 32.7 bits (73), Expect = 1.3
Identities = 21/84 (25%), Positives = 33/84 (39%)
Frame = +1
Query: 64 RPCVRMEAAGQPTTTLTSLLAIHEVVVSPLATRR*LPTKVYTKPHS*TSRTHTTPGCTTT 243
R CV+ + + T T+ + +P+ T P + TSR+ T T+T
Sbjct: 707 RSCVKEPVIPEASPTTTTSAPVTTTTSAPVTTTTSAPVTTTSTTARPTSRSTTLAKITST 766
Query: 244 HPAFYPHDPKLAFTLYFNSRPAAH 315
P PK+A T RP +
Sbjct: 767 TSTLAPQRPKMASTTIAPQRPTTN 790
>pir||QRXLL1 LDL receptor 1 precursor - African clawed frog
Length = 909
Score = 32.7 bits (73), Expect = 1.3
Identities = 21/84 (25%), Positives = 33/84 (39%)
Frame = +1
Query: 64 RPCVRMEAAGQPTTTLTSLLAIHEVVVSPLATRR*LPTKVYTKPHS*TSRTHTTPGCTTT 243
R CV+ + + T T+ + +P+ T P + TSR+ T T+T
Sbjct: 707 RSCVKEPVIPEASPTTTTSAPVTTTTSAPVTTTTSAPVTTTSTTARPTSRSTTLAKITST 766
Query: 244 HPAFYPHDPKLAFTLYFNSRPAAH 315
P PK+A T RP +
Sbjct: 767 TSTLAPQRPKMASTTIAPQRPTTN 790
>ref|XP_352004.1| similar to RIKEN cDNA 5730427C23 [Homo sapiens]
Length = 875
Score = 32.3 bits (72), Expect = 1.7
Identities = 16/38 (42%), Positives = 19/38 (49%)
Frame = +2
Query: 209 HARTPRRVAPPRTRPFTHTTQNLLSRSTSTPGLLHTPH 322
HA TP ++ P T T T + STPG L TPH
Sbjct: 250 HASTPGTLSTPHTHASTPGTLSTPHTHASTPGTLSTPH 287
Score = 32.3 bits (72), Expect = 1.7
Identities = 16/38 (42%), Positives = 19/38 (49%)
Frame = +2
Query: 209 HARTPRRVAPPRTRPFTHTTQNLLSRSTSTPGLLHTPH 322
HA TP ++ P T T T + STPG L TPH
Sbjct: 263 HASTPGTLSTPHTHASTPGTLSTPHTHASTPGTLSTPH 300
Score = 32.3 bits (72), Expect = 1.7
Identities = 15/38 (39%), Positives = 19/38 (49%)
Frame = +2
Query: 209 HARTPRRVAPPRTRPFTHTTQNLLSRSTSTPGLLHTPH 322
H TP ++ P T T +T + STPG L TPH
Sbjct: 224 HTSTPSTLSTPHTHTSTPSTLSTPHTHASTPGTLSTPH 261
Score = 32.3 bits (72), Expect = 1.7
Identities = 16/38 (42%), Positives = 19/38 (49%)
Frame = +2
Query: 209 HARTPRRVAPPRTRPFTHTTQNLLSRSTSTPGLLHTPH 322
HA TP ++ P T T T + STPG L TPH
Sbjct: 276 HASTPGTLSTPHTHASTPGTLSTPHTHASTPGTLSTPH 313
Score = 32.3 bits (72), Expect = 1.7
Identities = 16/38 (42%), Positives = 19/38 (49%)
Frame = +2
Query: 209 HARTPRRVAPPRTRPFTHTTQNLLSRSTSTPGLLHTPH 322
HA TP ++ P T T T + STPG L TPH
Sbjct: 289 HASTPGTLSTPHTHASTPGTLSTPHTHASTPGTLSTPH 326
Score = 31.2 bits (69), Expect = 3.7
Identities = 15/38 (39%), Positives = 18/38 (46%)
Frame = +2
Query: 209 HARTPRRVAPPRTRPFTHTTQNLLSRSTSTPGLLHTPH 322
H TP ++ P T T T + STPG L TPH
Sbjct: 237 HTSTPSTLSTPHTHASTPGTLSTPHTHASTPGTLSTPH 274
Score = 30.4 bits (67), Expect = 6.3
Identities = 15/38 (39%), Positives = 18/38 (46%)
Frame = +2
Query: 209 HARTPRRVAPPRTRPFTHTTQNLLSRSTSTPGLLHTPH 322
HA TP ++ P T T T + STPG L PH
Sbjct: 302 HASTPGTLSTPHTHASTPGTLSTPHTHASTPGTLSAPH 339
Score = 30.4 bits (67), Expect = 6.3
Identities = 15/38 (39%), Positives = 18/38 (46%)
Frame = +2
Query: 209 HARTPRRVAPPRTRPFTHTTQNLLSRSTSTPGLLHTPH 322
HA TP ++ P T T T + STPG L PH
Sbjct: 328 HASTPGTLSAPHTHASTPGTLSAPHTHASTPGTLSAPH 365
Score = 30.4 bits (67), Expect = 6.3
Identities = 15/38 (39%), Positives = 18/38 (46%)
Frame = +2
Query: 209 HARTPRRVAPPRTRPFTHTTQNLLSRSTSTPGLLHTPH 322
HA TP ++ P T T T + STPG L PH
Sbjct: 315 HASTPGTLSTPHTHASTPGTLSAPHTHASTPGTLSAPH 352
>ref|XP_344234.1| similar to genomic screen homeobox protein 2 [Rattus norvegicus]
Length = 305
Score = 32.0 bits (71), Expect = 2.2
Identities = 29/90 (32%), Positives = 33/90 (36%), Gaps = 15/90 (16%)
Frame = +3
Query: 24 SATAGACCLAP---------KRPPMRAHGGGRPAHHHAYVIASNTRGGSVPAGDQALIAN 176
S +GA C+ P RPP A GG A GG V G AL
Sbjct: 52 SRKSGAFCVCPLCVTSHLHSSRPPAGAGGGATGTAGAAVA------GGGVAGGTGALPLL 105
Query: 177 KSLYKTS------LLNFTHAHHAGLHHHAP 248
KS + +HAHH HHHAP
Sbjct: 106 KSQFSPGPGDAQFCPRVSHAHH---HHHAP 132
