KCC002698A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002698A_C01 KCC002698A_c01
ttgttcttgtagtgtcCATCATTTGGAGACTAGCCTGTCCGTATAGCACTGCTGCACTTG
GAACCAACCAAACGTATGCTTGCATTGAGTGGGCTGCGAGCTCATGCAGCTGCCATATTG
CATGACGATAACAACGATAATCTCGCGGAGTTCTCCTAGGCGCCACTGAACCACTGGGTT
TGCCGCGTCAGCATTTTTTTGCCTACGCCGCGAAAGCGCTGTTTCGGCCGCGCACATGAC
TACGGTCATAAAATGCACCGCTCATGCACGTTCACAATCTGGGGCAAGCAAGAATAGCTG
TTTGGCGCCCCCATCGTGCAGCTCGATGCGTCGCTGCGTCGCTGCGCCAGGTTTTGGCCT
TTGGAGGTGGCAGTCTGGCATCGGGAGGCATTTTGAGCCAGCAGCCGGGTCCGTTCCATA
TGCGTTAGCTACCAACGCCCGCCAAGGCGCGCCGCTTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002698A_C01 KCC002698A_c01
         (458 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAL96760.1|AC104496_6 Tcc1l8.6 [Trypanosoma cruzi]                  35  0.40
dbj|BAB16868.1| putative zinc finger protein [Oryza sativa (japo...    35  0.40
ref|NP_487688.1| heterocyst specific ABC-transporter, membrane s...    33  2.0
ref|XP_314677.1| ENSANGP00000013295 [Anopheles gambiae] gi|21298...    32  4.4
ref|NP_218618.1| T. pallidum predicted coding region TP0179 [Tre...    32  4.4

>gb|AAL96760.1|AC104496_6 Tcc1l8.6 [Trypanosoma cruzi]
          Length = 963

 Score = 35.0 bits (79), Expect = 0.40
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 261 LMHVHNLGQ-ARIAVWRPHRAARCVAASLRQVLAFGGGSLASGGILSQQPGPFH 419
           LM+ + +G+ +RI VW P R+ R V+ +LR   A  G     G     Q G FH
Sbjct: 340 LMNFNLVGRGSRIGVWLPRRSPRAVSGTLRSAAADRGTVTTGGSADCAQEGQFH 393

>dbj|BAB16868.1| putative zinc finger protein [Oryza sativa (japonica
           cultivar-group)] gi|14646771|dbj|BAB61934.1| putative
           zinc finger protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 514

 Score = 35.0 bits (79), Expect = 0.40
 Identities = 17/46 (36%), Positives = 23/46 (49%)
 Frame = +2

Query: 224 SAAHMTTVIKCTAHARSQSGASKNSCLAPPSCSSMRRCVAAPGFGL 361
           S AHM      + H  S S A+ N+   PP+ +    CV A G+GL
Sbjct: 386 SHAHMAAAAAASTHNSSSSAATTNAPPPPPTSNVSSTCVGAGGYGL 431

>ref|NP_487688.1| heterocyst specific ABC-transporter, membrane spanning subunit DevC
           homolog [Nostoc sp. PCC 7120] gi|25535424|pir||AI2261
           hypothetical protein alr3648 [imported] - Nostoc sp.
           (strain PCC 7120) gi|17132781|dbj|BAB75347.1|
           ORF_ID:alr3648~heterocyst specific ABC-transporter,
           membrane spanning subunit DevC homolog [Nostoc sp. PCC
           7120]
          Length = 388

 Score = 32.7 bits (73), Expect = 2.0
 Identities = 15/43 (34%), Positives = 26/43 (59%)
 Frame = -3

Query: 306 AKQLFLLAPDCERA*AVHFMTVVMCAAETALSRRRQKNADAAN 178
           A  +  +A   ERA  V  +T++MC A  A++ R+ ++AD A+
Sbjct: 344 AATMLPIAMKLERAITVFILTIIMCTASGAIAMRKLRSADPAD 386

>ref|XP_314677.1| ENSANGP00000013295 [Anopheles gambiae] gi|21298000|gb|EAA10145.1|
           ENSANGP00000013295 [Anopheles gambiae str. PEST]
          Length = 332

 Score = 31.6 bits (70), Expect = 4.4
 Identities = 16/45 (35%), Positives = 20/45 (43%)
 Frame = -2

Query: 376 RLPPPKAKTWRSDAATHRAARWGRQTAILACPRL*TCMSGAFYDR 242
           ++PPP A+T+ S    H      RQT  L CP         F DR
Sbjct: 170 KVPPPAARTFLSGTIVHSGLMATRQTVALQCPFFMRHQQSHFSDR 214

>ref|NP_218618.1| T. pallidum predicted coding region TP0179 [Treponema pallidum
           subsp. pallidum str. Nichols]
           gi|14285842|sp|O83209|Y179_TREPA Hypothetical protein
           TP0179 gi|7519464|pir||E71353 hypothetical protein
           TP0179 - syphilis spirochete gi|3322472|gb|AAC65193.1|
           T. pallidum predicted coding region TP0179 [Treponema
           pallidum subsp. pallidum str. Nichols]
          Length = 627

 Score = 31.6 bits (70), Expect = 4.4
 Identities = 11/23 (47%), Positives = 16/23 (68%)
 Frame = -2

Query: 433 GS*RIWNGPGCWLKMPPDARLPP 365
           G  R W+  G W+K+PP+A+ PP
Sbjct: 80  GEDRAWDACGVWVKVPPEAQEPP 102



EST assemble image


clone accession position
1 LCL047d12_r AV628811 1 458
2 HCL091d09_r AV644627 17 427




Chlamydomonas reinhardtii
Kazusa DNA Research Institute