KCC002696A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002696A_C01 KCC002696A_c01
cgcgccaccacaccttcttcgagatgctgggcaacttCTCCTTCGGCGACTACTTCAAGG
AGCAGGCCATCAAGTGGGCCTGGGAGCTGAGCACGGGCGTGTTCGGCCTGCCTGCGGAGC
GCGTGTGGGTGTCGGTGTATGAGGAGGACGCCGAGGCGGAGGCCATTTGGCGCGACGTGG
TGGGCGTGGCGCCGGAGCGCATCAAGCGCATGGGTGCTGCCGACAACTTCTGGAGCAGCG
GCCCCACCGGCCCCTGCGGCCCCTGCTCCGAGCTCTACTACGACTTCCACCCAGAGCGCG
GCACGCAGGACGCCTCCCTGGAGGACGACAGCCGCTTCATCGAGTTCTACAACCTGGTGT
TCATGCAGCTCAACAGGAAGCCCGACGGCAGTCTGGAGCCCCTGGCCGCCAAGAACATCG
ACACGGGCATGGGGCTGGAGCGCATGGCGCAGATCCTGCAGGGCGTGTCCAACAACTACG
AGACCGACTTGATCTTCCCTATT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002696A_C01 KCC002696A_c01
         (503 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB10601.1| alanyl-tRNA synthetase [Arabidopsis thaliana]         279  2e-74
ref|NP_680210.2| alanine--tRNA ligase -related [Arabidopsis thal...   279  2e-74
ref|NP_441845.1| alanyl-tRNA synthetase [Synechocystis sp. PCC 6...   276  1e-73
ref|NP_925294.1| alanyl-tRNA synthetase [Gloeobacter violaceus] ...   276  1e-73
ref|NP_486458.1| alanyl-tRNA synthetase [Nostoc sp. PCC 7120] gi...   275  2e-73

>dbj|BAB10601.1| alanyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 954

 Score =  279 bits (713), Expect = 2e-74
 Identities = 131/168 (77%), Positives = 146/168 (85%), Gaps = 1/168 (0%)
 Frame = +3

Query: 3   RHHTFFEMLGNFSFGDYFKEQAIKWAWELSTGVFGLPAERVWVSVYEEDAEAEAIWRDVV 182
           RHHTFFEMLGNFSFGDYFK++AIKWAWELST  FGLPA RVWVS+YE+D EA  IW++ V
Sbjct: 132 RHHTFFEMLGNFSFGDYFKKEAIKWAWELSTIEFGLPANRVWVSIYEDDDEAFEIWKNEV 191

Query: 183 GVAPERIKRMGAADNFWSSGPTGPCGPCSELYYDFHPERG-TQDASLEDDSRFIEFYNLV 359
           GV+ ERIKRMG ADNFW+SGPTGPCGPCSELYYDF+PERG  +D  L DD+RFIEFYNLV
Sbjct: 192 GVSVERIKRMGEADNFWTSGPTGPCGPCSELYYDFYPERGYDEDVDLGDDTRFIEFYNLV 251

Query: 360 FMQLNRKPDGSLEPLAAKNIDTGMGLERMAQILQGVSNNYETDLIFPI 503
           FMQ N+  DG LEPL  KNIDTG+GLER+AQILQ V NNYETDLI+PI
Sbjct: 252 FMQYNKTEDGLLEPLKQKNIDTGLGLERIAQILQKVPNNYETDLIYPI 299

>ref|NP_680210.2| alanine--tRNA ligase -related [Arabidopsis thaliana]
          Length = 978

 Score =  279 bits (713), Expect = 2e-74
 Identities = 131/168 (77%), Positives = 146/168 (85%), Gaps = 1/168 (0%)
 Frame = +3

Query: 3   RHHTFFEMLGNFSFGDYFKEQAIKWAWELSTGVFGLPAERVWVSVYEEDAEAEAIWRDVV 182
           RHHTFFEMLGNFSFGDYFK++AIKWAWELST  FGLPA RVWVS+YE+D EA  IW++ V
Sbjct: 156 RHHTFFEMLGNFSFGDYFKKEAIKWAWELSTIEFGLPANRVWVSIYEDDDEAFEIWKNEV 215

Query: 183 GVAPERIKRMGAADNFWSSGPTGPCGPCSELYYDFHPERG-TQDASLEDDSRFIEFYNLV 359
           GV+ ERIKRMG ADNFW+SGPTGPCGPCSELYYDF+PERG  +D  L DD+RFIEFYNLV
Sbjct: 216 GVSVERIKRMGEADNFWTSGPTGPCGPCSELYYDFYPERGYDEDVDLGDDTRFIEFYNLV 275

Query: 360 FMQLNRKPDGSLEPLAAKNIDTGMGLERMAQILQGVSNNYETDLIFPI 503
           FMQ N+  DG LEPL  KNIDTG+GLER+AQILQ V NNYETDLI+PI
Sbjct: 276 FMQYNKTEDGLLEPLKQKNIDTGLGLERIAQILQKVPNNYETDLIYPI 323

>ref|NP_441845.1| alanyl-tRNA synthetase [Synechocystis sp. PCC 6803]
           gi|2500959|sp|P74423|SYA_SYNY3 Alanyl-tRNA synthetase
           (Alanine--tRNA ligase) (AlaRS) gi|7437614|pir||S76394
           hypothetical protein - Synechocystis sp. (strain PCC
           6803) gi|1653611|dbj|BAA18523.1| alanyl-tRNA synthetase
           [Synechocystis sp. PCC 6803]
          Length = 877

 Score =  276 bits (706), Expect = 1e-73
 Identities = 132/167 (79%), Positives = 140/167 (83%)
 Frame = +3

Query: 3   RHHTFFEMLGNFSFGDYFKEQAIKWAWELSTGVFGLPAERVWVSVYEEDAEAEAIWRDVV 182
           RHHTFFEMLGNFSFGDYFK QAI WAWELST VF LPAER+ VSV+EED EA AIWRD +
Sbjct: 86  RHHTFFEMLGNFSFGDYFKSQAIAWAWELSTQVFKLPAERLVVSVFEEDDEAFAIWRDEI 145

Query: 183 GVAPERIKRMGAADNFWSSGPTGPCGPCSELYYDFHPERGTQDASLEDDSRFIEFYNLVF 362
           G+   RI+RMGA DNFW SGPTGPCGPCSE+YYDFHPE G +   LEDDSRFIEFYNLVF
Sbjct: 146 GIPAHRIQRMGADDNFWVSGPTGPCGPCSEIYYDFHPELGDEKLDLEDDSRFIEFYNLVF 205

Query: 363 MQLNRKPDGSLEPLAAKNIDTGMGLERMAQILQGVSNNYETDLIFPI 503
           MQ NR   G+L PL  KNIDTGMGLERMAQILQ V NNYETDLIFPI
Sbjct: 206 MQYNRDNAGNLTPLEKKNIDTGMGLERMAQILQKVPNNYETDLIFPI 252

>ref|NP_925294.1| alanyl-tRNA synthetase [Gloeobacter violaceus]
           gi|35212916|dbj|BAC90289.1| alanyl-tRNA synthetase
           [Gloeobacter violaceus]
          Length = 871

 Score =  276 bits (705), Expect = 1e-73
 Identities = 123/167 (73%), Positives = 140/167 (83%)
 Frame = +3

Query: 3   RHHTFFEMLGNFSFGDYFKEQAIKWAWELSTGVFGLPAERVWVSVYEEDAEAEAIWRDVV 182
           RHHTFFEMLGNFSFGDYFK +AI WAWEL TGVF LP ER+WVSVYEED EA  +W++V 
Sbjct: 83  RHHTFFEMLGNFSFGDYFKREAIGWAWELVTGVFELPPERLWVSVYEEDEEALVLWQEVA 142

Query: 183 GVAPERIKRMGAADNFWSSGPTGPCGPCSELYYDFHPERGTQDASLEDDSRFIEFYNLVF 362
           G+ P R+++MGA  NFW SGPTGPCGPCSE+YYDFHPERG  D  L+DDSRF+E YNLVF
Sbjct: 143 GLPPVRVRKMGADSNFWESGPTGPCGPCSEIYYDFHPERGEGDIDLDDDSRFLEIYNLVF 202

Query: 363 MQLNRKPDGSLEPLAAKNIDTGMGLERMAQILQGVSNNYETDLIFPI 503
           MQLNR  +G+   L  KNIDTG+GLERMAQ+LQGV NNYETDL+FPI
Sbjct: 203 MQLNRDSEGTFSELPRKNIDTGLGLERMAQVLQGVPNNYETDLVFPI 249

>ref|NP_486458.1| alanyl-tRNA synthetase [Nostoc sp. PCC 7120]
           gi|20532251|sp|Q8YUD4|SYA_ANASP Alanyl-tRNA synthetase
           (Alanine--tRNA ligase) (AlaRS) gi|25293093|pir||AC2108
           alanyl-tRNA synthetase [imported] - Nostoc sp. (strain
           PCC 7120) gi|17131510|dbj|BAB74117.1| alanyl-tRNA
           synthetase [Nostoc sp. PCC 7120]
          Length = 880

 Score =  275 bits (704), Expect = 2e-73
 Identities = 130/167 (77%), Positives = 139/167 (82%)
 Frame = +3

Query: 3   RHHTFFEMLGNFSFGDYFKEQAIKWAWELSTGVFGLPAERVWVSVYEEDAEAEAIWRDVV 182
           RH TFFEMLGNFSFGDYFKEQAI W WE+ST VFGLP ER+ VSV+EED EA AIWRD +
Sbjct: 86  RHQTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPKERLVVSVFEEDDEAYAIWRDQI 145

Query: 183 GVAPERIKRMGAADNFWSSGPTGPCGPCSELYYDFHPERGTQDASLEDDSRFIEFYNLVF 362
           GV   RIKRMGA DNFW SGPTGPCGPCSE+YYDFHPERG  +  LEDD+RFIEFYNLVF
Sbjct: 146 GVTEARIKRMGADDNFWVSGPTGPCGPCSEIYYDFHPERGDDNIDLEDDTRFIEFYNLVF 205

Query: 363 MQLNRKPDGSLEPLAAKNIDTGMGLERMAQILQGVSNNYETDLIFPI 503
           MQ NR   G+L PL  KNIDTGMGLER+ QILQ V NNYETDLIFPI
Sbjct: 206 MQYNRDASGNLTPLQNKNIDTGMGLERITQILQRVPNNYETDLIFPI 252



EST assemble image


clone accession position
1 LCL091f07_r AV631300 1 280
2 LCL025e06_r AV627355 38 503
3 HCL090f06_r AV644566 77 451




Chlamydomonas reinhardtii
Kazusa DNA Research Institute