KCC002695A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002695A_C01 KCC002695A_c01
ctcaagtgcgaattacttccaGAACATCGTGGAGCTCAACGGAACTTATACATTTTGGGA
CTCGGGCCCATCAAACAACCTGGGCCCGTCCAGACAGCTGCACGCCCCGTCCCGCCGCCC
TTGCAGAAGGCCAAAAAGGAGCGGTGGTGCTTTGCTGACTGAACGGGAGCCTTCGACAAA
GGAGCAAAGTTGGCGGCCTTTCCAAGAGAGGTCGCCGGTCGTGGACTTCGGCGCTGAACC
GGGCTTGGCAGAACTCTAGCTTTCTTAGCCCTTCTCACGCCACGCTTGTCGTAATTATGG
CGTCTACTATTACGCCCAGCGCAGGCTCTCTGGTGACGGCTCTGCTCGCGGAGATTGAGC
GAGATCGCGAGCGGAAGAAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002695A_C01 KCC002695A_c01
         (380 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|O94850|DEND_HUMAN Dendrin                                           34  0.44
ref|XP_290598.1| similar to KIAA0749 protein [Homo sapiens]            34  0.44
dbj|BAA34469.1| KIAA0749 protein [Homo sapiens]                        34  0.44
ref|ZP_00140636.1| COG2855: Predicted membrane protein [Pseudomo...    34  0.57
emb|CAA90940.1| alginate lyase [Pseudomonas aeruginosa]                33  0.98

>sp|O94850|DEND_HUMAN Dendrin
          Length = 657

 Score = 34.3 bits (77), Expect = 0.44
 Identities = 33/118 (27%), Positives = 47/118 (38%), Gaps = 8/118 (6%)
 Frame = -1

Query: 374 PLAISLNLREQSRHQRACAGRNSRRHNYDKR---GVRRAKKARVLPSPVQRRSPRPATSL 204
           PLA  +  REQ + + A   R ++     +R   G RR+   R  P P  R +PR A   
Sbjct: 47  PLA-EVRAREQEKRKAASQEREAKETERKRRKAGGARRSPPGRPRPEP--RNAPRVAQLA 103

Query: 203 GKAA-----NFAPLSKAPVQSAKHHRSFLAFCKGGGTGRAAVWTGPGCLMGPSPKMYK 45
           G  A       AP+ +AP  SA+             +   + W GP     P P  Y+
Sbjct: 104 GLPAPLRPERLAPVGRAPRPSAQPQ-----------SDPGSAWAGPWGGRRPGPPSYE 150

>ref|XP_290598.1| similar to KIAA0749 protein [Homo sapiens]
          Length = 711

 Score = 34.3 bits (77), Expect = 0.44
 Identities = 33/118 (27%), Positives = 47/118 (38%), Gaps = 8/118 (6%)
 Frame = -1

Query: 374 PLAISLNLREQSRHQRACAGRNSRRHNYDKR---GVRRAKKARVLPSPVQRRSPRPATSL 204
           PLA  +  REQ + + A   R ++     +R   G RR+   R  P P  R +PR A   
Sbjct: 101 PLA-EVRAREQEKRKAASQEREAKETERKRRKAGGARRSPPGRPRPEP--RNAPRVAQLA 157

Query: 203 GKAA-----NFAPLSKAPVQSAKHHRSFLAFCKGGGTGRAAVWTGPGCLMGPSPKMYK 45
           G  A       AP+ +AP  SA+             +   + W GP     P P  Y+
Sbjct: 158 GLPAPLRPERLAPVGRAPRPSAQPQ-----------SDPGSAWAGPWGGRRPGPPSYE 204

>dbj|BAA34469.1| KIAA0749 protein [Homo sapiens]
          Length = 678

 Score = 34.3 bits (77), Expect = 0.44
 Identities = 33/118 (27%), Positives = 47/118 (38%), Gaps = 8/118 (6%)
 Frame = -1

Query: 374 PLAISLNLREQSRHQRACAGRNSRRHNYDKR---GVRRAKKARVLPSPVQRRSPRPATSL 204
           PLA  +  REQ + + A   R ++     +R   G RR+   R  P P  R +PR A   
Sbjct: 68  PLA-EVRAREQEKRKAASQEREAKETERKRRKAGGARRSPPGRPRPEP--RNAPRVAQLA 124

Query: 203 GKAA-----NFAPLSKAPVQSAKHHRSFLAFCKGGGTGRAAVWTGPGCLMGPSPKMYK 45
           G  A       AP+ +AP  SA+             +   + W GP     P P  Y+
Sbjct: 125 GLPAPLRPERLAPVGRAPRPSAQPQ-----------SDPGSAWAGPWGGRRPGPPSYE 171

>ref|ZP_00140636.1| COG2855: Predicted membrane protein [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 380

 Score = 33.9 bits (76), Expect = 0.57
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -1

Query: 347 EQSRHQRACAGRNSRRHNYDKRGVRRAKKARVLPSPVQRRSPRPATS---LGKAANFAPL 177
           E+ R     AGR  RRH   +RG+R    AR L     RR P   T+    G +A F  L
Sbjct: 72  ERPRRAERRAGRYPRRHRRGRRGLRPGPAARPLRPEESRRRPAVETAHQRAGVSAMFESL 131

Query: 176 SK 171
           +K
Sbjct: 132 NK 133

>emb|CAA90940.1| alginate lyase [Pseudomonas aeruginosa]
          Length = 684

 Score = 33.1 bits (74), Expect = 0.98
 Identities = 31/104 (29%), Positives = 39/104 (36%), Gaps = 19/104 (18%)
 Frame = -1

Query: 353 LREQSRHQRACAGRNSRRHNYDKRGVRRAKKA----------RVLPSPVQRRSPRPATSL 204
           LR+    QRA  G +  R    +  VRR  +           RVL  P  RR P P    
Sbjct: 150 LRQLPDRQRAAEGAHPPRRRARRAAVRRTLRTVEDRLRCADERVLVPPDPRRWPLPRHQP 209

Query: 203 GKAANFAPLSKAPVQSAKH---------HRSFLAFCKGGGTGRA 99
           G+AA  A L +A     +          H + L    GGG G A
Sbjct: 210 GRAAGLAVLPEAGGTGGRQPWLSRRTDPHPTLLRRLLGGGLGLA 253



EST assemble image


clone accession position
1 HCL093h03_r AV644792 1 380
2 HCL090d11_r AV644553 22 322




Chlamydomonas reinhardtii
Kazusa DNA Research Institute