KCC002690A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002690A_C01 KCC002690A_c01
caaACACCTTATGACTGAAGATGCAGTATTGAATCAGTACCAATCAAGGGCGTTTTGGTC
ACGTCCTGTGGAGCACCTAAATGGCCTCGTCGTCGCCCAGCAGTGCCGCGATGGCTATGC
AAACAACATTTCAGGTAGTGAAAGATAATGAAGCAGCAACTGAAGATGCGGGGACTCGTG
ACAACTCTGACGCTGGTGCGCCTCAGCAGTCTTCGCGCCTTTCCAGCTATATGAGCGCAA
ACTACAGCCACGACTCGCTCGCTACAGATGATATGCATCTTATGAACAGCTTTACGGAGG
AGACCTTTTTGGAGATGCTCGATTTTGGCTCTGGCGAACCGTTACCCGCCGCTTTGACGT
TAGAGGCGGTGCACGCGGCTGTTGCATCCGAGCGTTATCACGTGCTTGGAGCGCCATCCA
CAAAGATGCTGACTCGGATAAGTGGAACCGGTCTGGCGCCCTGGGAGATCCATCGGCCCC
AGAAGTTCGTTCGCGACCTAGTGTTGCGCGGCTGCTTCTCGGGGCGAGTTCTGGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002690A_C01 KCC002690A_c01
         (535 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_302837.1| hypothetical protein XP_302837 [Homo sapiens]         39  0.056
dbj|BAC39631.1| unnamed protein product [Mus musculus]                 38  0.095
ref|XP_126889.1| similar to CGI-87 protein [Homo sapiens] [Mus m...    38  0.095
dbj|BAC27540.1| unnamed protein product [Mus musculus]                 38  0.095
dbj|BAC87637.1| unnamed protein product [Homo sapiens]                 36  0.28

>ref|XP_302837.1| hypothetical protein XP_302837 [Homo sapiens]
          Length = 250

 Score = 38.5 bits (88), Expect = 0.056
 Identities = 24/80 (30%), Positives = 36/80 (45%)
 Frame = -2

Query: 534 PELAPRSSRATLGRERTSGADGSPRAPDRFHLSESASLWMALQARDNARMQQPRAPPLTS 355
           P  +PR +  T    RT   +   R P     + + S       R + R   PRA P  +
Sbjct: 77  PRASPRRTPPTASPTRTPPTESPARTPPTASPARTPS-------RASPRRTPPRASPTRT 129

Query: 354 KRRVTVRQSQNRASPKRSPP 295
             R + R++  RASP+R+PP
Sbjct: 130 PPRASPRRTPPRASPRRTPP 149

 Score = 33.1 bits (74), Expect = 2.3
 Identities = 22/80 (27%), Positives = 33/80 (40%)
 Frame = -2

Query: 534 PELAPRSSRATLGRERTSGADGSPRAPDRFHLSESASLWMALQARDNARMQQPRAPPLTS 355
           P  +P  +       RT   +   R P     + + S       R + R   PRA P  +
Sbjct: 167 PRASPTRTPPRASPTRTPPTESPARTPPTASPARTPS-------RASPRRMPPRASPTRT 219

Query: 354 KRRVTVRQSQNRASPKRSPP 295
             R +  ++  RASPKR+PP
Sbjct: 220 PPRASPTRTPPRASPKRTPP 239

 Score = 32.7 bits (73), Expect = 3.1
 Identities = 27/84 (32%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
 Frame = -2

Query: 534 PELAPRSSRATLGRERTSGADGSPRAPDRFHLSESASLWMALQARDNARMQQPRAPPLTS 355
           P  +P  +  T    RT       R P R           A  AR   R    R PP  S
Sbjct: 14  PTASPARTPPTESPARTPPTASPARTPPR-----------ASPARTPPRASPGRTPPRAS 62

Query: 354 KRRVTVRQSQNRA----SPKRSPP 295
            RR   R S  RA    SP+R+PP
Sbjct: 63  PRRTPPRASPRRAPPRASPRRTPP 86

>dbj|BAC39631.1| unnamed protein product [Mus musculus]
          Length = 571

 Score = 37.7 bits (86), Expect = 0.095
 Identities = 38/138 (27%), Positives = 65/138 (46%), Gaps = 4/138 (2%)
 Frame = +3

Query: 84  ASSSPSSAAMAMQTTF--QVVKDNEAATEDAGTRDNSDAGAPQQSSRLSSYMSANYSHDS 257
           A+++PS   + +Q  F  Q+VK + + +  + T   +     Q S  LS++     S +S
Sbjct: 210 ATATPSQPHLFLQDGFESQMVK-SPSFSSTSETSAKTPPPMVQPSPSLSTFFGDTMSSNS 268

Query: 258 LATDDMHLMNSFTEETFLEMLDFGSGEPLPAALTLEAVHAAVASERYHVLGAP--STKML 431
           LA+D     +SFT  TF+ + +  +G P+P  L   +   A   E+     +P  ST+M 
Sbjct: 269 LASD---FFDSFTTSTFISVSNPNAGSPVPEKL---SSLTAPVGEKSPDSTSPSYSTRMD 322

Query: 432 TRISGTGLAPWEIHRPQK 485
              SG   AP ++    K
Sbjct: 323 RSESGVSRAPLDVPESPK 340

>ref|XP_126889.1| similar to CGI-87 protein [Homo sapiens] [Mus musculus]
          Length = 797

 Score = 37.7 bits (86), Expect = 0.095
 Identities = 38/138 (27%), Positives = 65/138 (46%), Gaps = 4/138 (2%)
 Frame = +3

Query: 84  ASSSPSSAAMAMQTTF--QVVKDNEAATEDAGTRDNSDAGAPQQSSRLSSYMSANYSHDS 257
           A+++PS   + +Q  F  Q+VK + + +  + T   +     Q S  LS++     S +S
Sbjct: 210 ATATPSQPHLFLQDGFESQMVK-SPSFSSTSETSAKTPPPMVQPSPSLSTFFGDTMSSNS 268

Query: 258 LATDDMHLMNSFTEETFLEMLDFGSGEPLPAALTLEAVHAAVASERYHVLGAP--STKML 431
           LA+D     +SFT  TF+ + +  +G P+P  L   +   A   E+     +P  ST+M 
Sbjct: 269 LASD---FFDSFTTSTFISVSNPNAGSPVPEKL---SSLTAPVGEKSPDSTSPSYSTRMD 322

Query: 432 TRISGTGLAPWEIHRPQK 485
              SG   AP ++    K
Sbjct: 323 RSESGVSRAPLDVPESPK 340

>dbj|BAC27540.1| unnamed protein product [Mus musculus]
          Length = 580

 Score = 37.7 bits (86), Expect = 0.095
 Identities = 38/138 (27%), Positives = 65/138 (46%), Gaps = 4/138 (2%)
 Frame = +3

Query: 84  ASSSPSSAAMAMQTTF--QVVKDNEAATEDAGTRDNSDAGAPQQSSRLSSYMSANYSHDS 257
           A+++PS   + +Q  F  Q+VK + + +  + T   +     Q S  LS++     S +S
Sbjct: 210 ATATPSQPHLFLQDGFESQMVK-SPSFSSTSETSAKTPPPMVQPSPSLSTFFGDTMSSNS 268

Query: 258 LATDDMHLMNSFTEETFLEMLDFGSGEPLPAALTLEAVHAAVASERYHVLGAP--STKML 431
           LA+D     +SFT  TF+ + +  +G P+P  L   +   A   E+     +P  ST+M 
Sbjct: 269 LASD---FFDSFTTSTFISVSNPNAGSPVPEKL---SSLTAPVGEKSPDSTSPSYSTRMD 322

Query: 432 TRISGTGLAPWEIHRPQK 485
              SG   AP ++    K
Sbjct: 323 RSESGVSRAPLDVPESPK 340

>dbj|BAC87637.1| unnamed protein product [Homo sapiens]
          Length = 286

 Score = 36.2 bits (82), Expect = 0.28
 Identities = 28/84 (33%), Positives = 32/84 (37%), Gaps = 4/84 (4%)
 Frame = -2

Query: 534 PELAPRSSRATLGRERTSGADGSPRAPDRFHLSESASLWMALQARDNARMQQPRAPPLTS 355
           P  +PR + +T    RT       R P R           A   R   R    R PP  S
Sbjct: 131 PRASPRRTPSTASPTRTPPRASPRRTPPR-----------ASPTRTPPRASPKRTPPRAS 179

Query: 354 KRRVTVRQSQNRA----SPKRSPP 295
            RR   R S  RA    SPKR+PP
Sbjct: 180 PRRTPPRASPTRAPPRASPKRTPP 203

 Score = 33.1 bits (74), Expect = 2.3
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
 Frame = -2

Query: 534 PELAPRSSRATLGRERTSGADGSPRAPDRFHLSESASLWMALQA--RDNARMQQPRAPPL 361
           P  +P  +  T    RT       R P R     + S     +   R + R   PRA P 
Sbjct: 104 PTESPARTPPTASPARTPPRASPTRTPPRASPRRTPSTASPTRTPPRASPRRTPPRASPT 163

Query: 360 TSKRRVTVRQSQNRASPKRSPP 295
            +  R + +++  RASP+R+PP
Sbjct: 164 RTPPRASPKRTPPRASPRRTPP 185



EST assemble image


clone accession position
1 LCL081b05_r AV630587 1 303
2 LCL061c12_r AV629580 4 417
3 HCL088g10_r AV644451 15 535
4 HCL091c01_r AV644610 92 463




Chlamydomonas reinhardtii
Kazusa DNA Research Institute