KCC002688A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002688A_C01 KCC002688A_c01
cttcaccgtgcgctgcccttATGGCATATACATTGATTTTGCTGCACCGCCGCTGATTAT
TCCCTTGCTCCGACTCTTCTTGACTGGCCTTTGTGTGCACATACGCTGCTGGGGACCCCG
CCGCTTATCGCCAAGTCACAGACGATGTTGTGCTGTTAAGTCTAGGAGCACCACTCGGCA
CAAAGTGGGCGTGACTGCGGTTGACAAGGACGCAGCGCAGCGATGAAGTTCGCGAAGCGC
CTGGCGAGCGAAGCCGCTCGGCGAAATGCTTTTGCGGACGCGTACTTCGATTACCGTGCT
GCGAAGAAGGCGATTAAGGAGGACTGCACCAACGGAGATGTTGCGGGTTCAAATTTCCAA
AAGCTGCTGCAGTCAGAGTTGCGCAAGGTATCCCATTTCTACTCGCAGAAGGCGGACCAC
GTGGAGGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002688A_C01 KCC002688A_c01
         (429 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_309953.1| ENSANGP00000019798 [Anopheles gambiae] gi|21293...    35  0.31
ref|NP_005927.1| myeloid/lymphoid or mixed-lineage leukemia (tri...    33  0.70
gb|AAP50987.1| hypothetical protein [Oryza sativa (japonica cult...    32  1.6
dbj|BAB19397.1| P0458A05.5 [Oryza sativa (japonica cultivar-group)]    32  1.6
dbj|BAB56083.1| P0665A11.29 [Oryza sativa (japonica cultivar-gro...    31  3.5

>ref|XP_309953.1| ENSANGP00000019798 [Anopheles gambiae] gi|21293576|gb|EAA05721.1|
           ENSANGP00000019798 [Anopheles gambiae str. PEST]
          Length = 206

 Score = 34.7 bits (78), Expect = 0.31
 Identities = 35/137 (25%), Positives = 53/137 (38%), Gaps = 2/137 (1%)
 Frame = +2

Query: 8   VRCPYGIYIDF--AAPPLIIPLLRLFLTGLCVHIRCWGPRRLSPSHRRCCAVKSRSTTRH 181
           +  PY +Y D      P I  +  L L  L      W P R +   R     +    +R 
Sbjct: 51  LNAPYVVYTDSNGQCKPKITLIESLSL--LSARYSYWTPSRTATGERDG---RHSEASRE 105

Query: 182 KVGVTAVDKDAAQR*SSRSAWRAKPLGEMLLRTRTSITVLRRRRLRRTAPTEMLRVQISK 361
            + V + D++  +R SS S+W  +   E  LRT  ++    R  L R     +  V +  
Sbjct: 106 SMSVPSRDRNHGRRSSSSSSWSGRKEPERTLRTDVNV---GRMTLERGCRERLCSVGVLN 162

Query: 362 SCCSQSCARYPISTRRR 412
           SC   + A Y     RR
Sbjct: 163 SCQRSNTAVYRTMQPRR 179

>ref|NP_005927.1| myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog,
            Drosophila); translocated to, 4; Myeloid/lymphoid or
            mixed-lineage leukemia, translocated to, 4;
            myeloid/lymphoid or mixed-lineage leukemia (trithorax
            (Drosophila) homolog); translocated to, 4 [Homo sapiens]
            gi|430994|gb|AAC50059.1| ALL-1 fusion partner from
            chromosome 6
          Length = 1612

 Score = 33.5 bits (75), Expect = 0.70
 Identities = 25/70 (35%), Positives = 33/70 (46%)
 Frame = -3

Query: 427  PPRGPPSASRNGIPCATLTAAAFGNLNPQHLRWCSPP*SPSSQHGNRSTRPQKHFAERLR 248
            PP  PPSA++ G+P A + AAA      +H RW     +P  +   R  R Q+      R
Sbjct: 1373 PP--PPSANQIGLPSAQV-AAAERRKREEHQRWYEKEKAPLEEERERKRREQE------R 1423

Query: 247  SPGASRTSSL 218
              G  RT SL
Sbjct: 1424 KLGQMRTQSL 1433

>gb|AAP50987.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 277

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 24/74 (32%), Positives = 29/74 (38%)
 Frame = -3

Query: 418 GPPSASRNGIPCATLTAAAFGNLNPQHLRWCSPP*SPSSQHGNRSTRPQKHFAERLRSPG 239
           G    SR  +PCA   A     + P   RW  PP S     G R     +    R R PG
Sbjct: 27  GGREGSRPTMPCARRRAPP--PVRPS--RWPPPPPSGQIWEGGRGAPAGRRAPPRRRPPG 82

Query: 238 ASRTSSLRCVLVNR 197
           A+   S RC+   R
Sbjct: 83  AATAGSRRCLRPGR 96

>dbj|BAB19397.1| P0458A05.5 [Oryza sativa (japonica cultivar-group)]
          Length = 669

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 23/72 (31%), Positives = 29/72 (39%)
 Frame = -3

Query: 427 PPRGPPSASRNGIPCATLTAAAFGNLNPQHLRWCSPP*SPSSQHGNRSTRPQKHFAERLR 248
           PPR  P++ RN      L A     +NP+ L +  P    S       + P    A R R
Sbjct: 228 PPRRRPTSPRNPPLPGPLLAPLSYKINPRGLLFLFPRFPESPTPSTELSTPIPFAAARRR 287

Query: 247 SPGASRTSSLRC 212
           SP A    S RC
Sbjct: 288 SPAARHRRSRRC 299

>dbj|BAB56083.1| P0665A11.29 [Oryza sativa (japonica cultivar-group)]
           gi|20160908|dbj|BAB89845.1| P0695H10.5 [Oryza sativa
           (japonica cultivar-group)]
          Length = 257

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = +3

Query: 207 RTQRSDEVREAPGERSRSAKCFCGRV-----LRLPCCEEGD*GGLHQRRCCGFKFPKAAA 371
           R +RS   R A G R  S  C    +       LPCC      G  +RRC G + P+A +
Sbjct: 18  RGRRSARTRSACGSRRSSRACLLWTLGLLGPTVLPCCYPR---GRPRRRCAGVRLPEARS 74

Query: 372 VRV 380
           + V
Sbjct: 75  LAV 77



EST assemble image


clone accession position
1 HCL088c04_r AV644424 1 429
2 MXL021d02_r BP094329 21 286




Chlamydomonas reinhardtii
Kazusa DNA Research Institute