KCC002687A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002687A_C01 KCC002687A_c01
ggaaccggcgcgctcaagatcacgccgggccacgacattaacgactacgagatcggcaag
cgccgcggcctgcccatcatCAACATCATGAACAAGGACGCCACGCTCAACGCCGCAGCG
GGCAAGTACGCGGGCCAGGAGCGCTTCAAGGCGCGCAAGGCGCTGTGGGCGGACATGGAG
GCGGCGGGCCTGGTCATCAAGAAGGAGGCACACACCAGCCGCATCCCGCGCTGCCAGCGC
TCGGGCGGTGTGGTGGAGCCGCTGGTGTCGGAGCAGTGGTTTGTGCGCATGCAGCCGCTG
GCGGAGCCGGCTCTGGCGGCGGTGGCTAAGGGCGACATCACCATCATGCCGGAGCGCTTC
GCCAAGACCTACAACAACTGGCTGGAGAACATCAAGGACTGGTGCATCTCCCGTCAGCTG
TGGTGGGGCCACCGCATCCCGGTCTGGTACGTGTTCCCCAGCGCCGAGGCCGCCGCCGCC
TCGCTGGAGGGCCGCTCCGAGCACTACGTGGTGGCCCGCAGTGCGGAGGAGGCGCAGCGC
CTGGCGGAGGCCAAGCACGGGGCGGGCGTGGTGCTGAAGCAGGAGGAGGACGTGCTGGAC
ACCTGGTTCAGCAGCGGGCTGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002687A_C01 KCC002687A_c01
         (623 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC83606.1| putative valyl-tRNA synthetase [Oryza sativa (ja...   266  2e-70
ref|ZP_00019799.1| hypothetical protein [Chloroflexus aurantiacus]    221  7e-57
ref|NP_622434.1| Valyl-tRNA synthetase [Thermoanaerobacter tengc...   217  1e-55
ref|NP_898485.1| valyl-tRNA synthetase [Synechococcus sp. WH 810...   216  2e-55
ref|NP_602802.1| Valyl-tRNA synthetase [Fusobacterium nucleatum ...   214  6e-55

>dbj|BAC83606.1| putative valyl-tRNA synthetase [Oryza sativa (japonica
           cultivar-group)]
          Length = 945

 Score =  266 bits (679), Expect = 2e-70
 Identities = 125/207 (60%), Positives = 152/207 (73%)
 Frame = +1

Query: 1   GTGALKITPGHDINDYEIGKRRGLPIINIMNKDATLNAAAGKYAGQERFKARKALWADME 180
           GTG LKI+PGHD NDY I ++ GLPI+N+MNKD TLN  AG Y+G +RF+AR+ LW+D+ 
Sbjct: 302 GTGVLKISPGHDHNDYHIARKLGLPILNVMNKDGTLNDVAGLYSGMDRFEAREKLWSDLV 361

Query: 181 AAGLVIKKEAHTSRIPRCQRSGGVVEPLVSEQWFVRMQPLAEPALAAVAKGDITIMPERF 360
              L +KKE +T R+PR QR G V+EPL+S+QWFV M PLAE AL AV KG +TI+PERF
Sbjct: 362 ETNLAVKKEPYTLRVPRSQRGGEVIEPLISKQWFVTMDPLAEKALHAVEKGQLTILPERF 421

Query: 361 AKTYNNWLENIKDWCISRQLWWGHRIPVWYVFPSAEAAAASLEGRSEHYVVARSAEEAQR 540
            K YN+WL NIKDWCISRQLWWGHRIPVWY+           +   E Y+VARSAEEA  
Sbjct: 422 EKIYNHWLTNIKDWCISRQLWWGHRIPVWYIVG---------KKCEEDYIVARSAEEALA 472

Query: 541 LAEAKHGAGVVLKQEEDVLDTWFSSGL 621
            A+ K+G  V + Q+ DVLDTWFSS L
Sbjct: 473 KAQEKYGKSVEIYQDPDVLDTWFSSAL 499

>ref|ZP_00019799.1| hypothetical protein [Chloroflexus aurantiacus]
          Length = 923

 Score =  221 bits (563), Expect = 7e-57
 Identities = 111/207 (53%), Positives = 136/207 (65%)
 Frame = +1

Query: 1   GTGALKITPGHDINDYEIGKRRGLPIINIMNKDATLNAAAGKYAGQERFKARKALWADME 180
           G+GA+KITP HD NDYEIGKR  LP+INI+N DAT+N A G Y G +RF+ RKA+ AD+E
Sbjct: 294 GSGAVKITPAHDKNDYEIGKRHHLPMINILNPDATINEAGGPYVGLDRFECRKAILADLE 353

Query: 181 AAGLVIKKEAHTSRIPRCQRSGGVVEPLVSEQWFVRMQPLAEPALAAVAKGDITIMPERF 360
             GL++K E H   +   QR G ++EPL+SEQWFVR +PLA+ A+AAV  G + I+PERF
Sbjct: 354 REGLLVKTEPHKMNVGISQRGGEIIEPLLSEQWFVRTRPLADLAIAAVRDGRVRIVPERF 413

Query: 361 AKTYNNWLENIKDWCISRQLWWGHRIPVWYVFPSAEAAAASLEGRSEHYVVARSAEEAQR 540
            K Y +WLENI+DWCISRQLWWGHRIPVWY+ P         +                 
Sbjct: 414 EKVYFHWLENIEDWCISRQLWWGHRIPVWYM-PDGSIVVPGPD----------------- 455

Query: 541 LAEAKHGAGVVLKQEEDVLDTWFSSGL 621
             E     GV   Q+ DVLDTWFSSGL
Sbjct: 456 --EPPPAEGV---QDPDVLDTWFSSGL 477

>ref|NP_622434.1| Valyl-tRNA synthetase [Thermoanaerobacter tengcongensis]
           gi|20515771|gb|AAM24038.1| Valyl-tRNA synthetase
           [Thermoanaerobacter tengcongensis]
          Length = 879

 Score =  217 bits (553), Expect = 1e-55
 Identities = 105/207 (50%), Positives = 134/207 (64%)
 Frame = +1

Query: 1   GTGALKITPGHDINDYEIGKRRGLPIINIMNKDATLNAAAGKYAGQERFKARKALWADME 180
           GTGA+K+TP HD ND+EIG R  LP +NIMN++AT+N   GKY G +R++AR+ +  D+E
Sbjct: 269 GTGAVKVTPAHDPNDFEIGVRHNLPFVNIMNENATINENGGKYEGLDRYEAREKIVKDLE 328

Query: 181 AAGLVIKKEAHTSRIPRCQRSGGVVEPLVSEQWFVRMQPLAEPALAAVAKGDITIMPERF 360
             GL++K E H   +  C R   VVEPL+SEQWFV+M+PLA+PAL  V +G I  +PERF
Sbjct: 329 EQGLLLKVEEHVHNVGHCYRCDTVVEPLLSEQWFVKMEPLAKPALQVVKEGKIKFVPERF 388

Query: 361 AKTYNNWLENIKDWCISRQLWWGHRIPVWYVFPSAEAAAASLEGRSEHYVVARSAEEAQR 540
            K Y NWLENIKDWCISRQLWWGHRIP WY                 H  V+R       
Sbjct: 389 EKIYTNWLENIKDWCISRQLWWGHRIPAWYCEDCG------------HVTVSREDPVKCE 436

Query: 541 LAEAKHGAGVVLKQEEDVLDTWFSSGL 621
           +  + +     + Q+E+VLDTWFSS L
Sbjct: 437 VCGSTN-----IHQDENVLDTWFSSAL 458

>ref|NP_898485.1| valyl-tRNA synthetase [Synechococcus sp. WH 8102]
           gi|33639527|emb|CAE08911.1| valyl-tRNA synthetase
           [Synechococcus sp. WH 8102]
          Length = 914

 Score =  216 bits (551), Expect = 2e-55
 Identities = 104/207 (50%), Positives = 138/207 (66%)
 Frame = +1

Query: 1   GTGALKITPGHDINDYEIGKRRGLPIINIMNKDATLNAAAGKYAGQERFKARKALWADME 180
           GTG +K+TP HD ND+ IG+R GLP I +M K+ T+N  AG++ G +RF+ARKA+ A ++
Sbjct: 268 GTGCVKVTPAHDPNDFAIGQRHGLPQITVMRKNGTMNKEAGQFEGLDRFEARKAVVAGLD 327

Query: 181 AAGLVIKKEAHTSRIPRCQRSGGVVEPLVSEQWFVRMQPLAEPALAAVAKGDITIMPERF 360
             GL++K E +   +P   R    VEPL+S QWFVR +PLA     A+ K D   +PER+
Sbjct: 328 ELGLLVKVEDYRHSVPYSDRGKVPVEPLLSTQWFVRTEPLAARCREALEKQDPRFIPERW 387

Query: 361 AKTYNNWLENIKDWCISRQLWWGHRIPVWYVFPSAEAAAASLEGRSEHYVVARSAEEAQR 540
            K Y +WL +I+DWCISRQLWWGHRIP W+V              +  YVVAR+  EA  
Sbjct: 388 EKVYRDWLTDIRDWCISRQLWWGHRIPAWFVISETGGKYTD----TTPYVVARNEVEALE 443

Query: 541 LAEAKHGAGVVLKQEEDVLDTWFSSGL 621
            A+AK+GA  V++Q+EDVLDTWFSSGL
Sbjct: 444 KAKAKYGAAAVIEQDEDVLDTWFSSGL 470

>ref|NP_602802.1| Valyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586] gi|19713276|gb|AAL94101.1| Valyl-tRNA
           synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 887

 Score =  214 bits (546), Expect = 6e-55
 Identities = 107/207 (51%), Positives = 131/207 (62%)
 Frame = +1

Query: 1   GTGALKITPGHDINDYEIGKRRGLPIINIMNKDATLNAAAGKYAGQERFKARKALWADME 180
           GTGALKITP HD NDY +GK+  LPIIN++  D  +     KYAG +RF+ARK +  D++
Sbjct: 268 GTGALKITPAHDPNDYNLGKKYNLPIINMLTPDGKIVEDYPKYAGLDRFEARKKIVEDLK 327

Query: 181 AAGLVIKKEAHTSRIPRCQRSGGVVEPLVSEQWFVRMQPLAEPALAAVAKGDITIMPERF 360
           A  L IK E     + +C R   V+EP VS QWFV+M+PLAE AL  V  G++ I+P+R 
Sbjct: 328 AQDLFIKTEHLHHAVGQCYRCQTVIEPRVSPQWFVKMKPLAEKALEVVRNGEVKILPKRM 387

Query: 361 AKTYNNWLENIKDWCISRQLWWGHRIPVWYVFPSAEAAAASLEGRSEHYVVARSAEEAQR 540
            K Y NWLENI+DWCISRQ+WWGHRIP WY             G   H  VA    EA+ 
Sbjct: 388 EKIYYNWLENIRDWCISRQIWWGHRIPAWY-------------GPDRHVFVAMDEAEAKE 434

Query: 541 LAEAKHGAGVVLKQEEDVLDTWFSSGL 621
            A+  +G  V L QEEDVLDTWFSS L
Sbjct: 435 QAKKHYGHDVELSQEEDVLDTWFSSAL 461



EST assemble image


clone accession position
1 MXL023h12_r BP094492 1 252
2 HCL088b04_r AV644416 100 623




Chlamydomonas reinhardtii
Kazusa DNA Research Institute