KCC002680A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002680A_C01 KCC002680A_c01
cgttccCGAAGTTCTTCGGTGCAGTAATGGCTGCCAATGACGAGAGCTCGGCCTTGCAGG
CCATTAAATACAAGCGCGGAAGCCTCCAGCTTCTAGATCAGCGCCTGCTGCCGTTTAGGA
CAGAATACTTGGATGTTCCTGATGTTAAGGCTGCATGGACCCAGATCCGCGACATGGTCG
TTCGCGGTGCGCCGGCAATCGGCTGCACTGGTGCATTGGCGATGGCGGTGGAGCTTCACG
CGCTGAAGGGCGCTGGCGCAGCATTTGGCTCGGCTCAGGAGGCTCTGGAGTTTATCAACC
AGACTCTTGACTTTCTGGTCACCAGCCGCCCCACTGCCGTGAACCTGGCTGACGCCTGCA
ACCGGCTCAAGGCAGTTGCCGCCACCGCCGGCGCCGCCGACGGCGCGAGCGCTGTGGGCG
TGTGCGGCGCCGTGATTGAGGCGGCAGAGGCGTATCTGGCCGAGGACATCGCGTCCAACA
AGGCCATGGGCGCCTTCGGCTCGGCGGCGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002680A_C01 KCC002680A_c01
         (510 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB63262.1| CIG2 [Nicotiana tabacum]                              137  8e-32
pir||H84471 hypothetical protein At2g05830 [imported] - Arabidop...   136  2e-31
ref|NP_027726.1| translation initiation factor eIF-2B alpha subu...   136  2e-31
gb|AAM65143.1| putative translation initiation factor eIF-2B alp...   135  3e-31
dbj|BAB21393.1| IDI2 [Hordeum vulgare subsp. vulgare]                 131  6e-30

>dbj|BAB63262.1| CIG2 [Nicotiana tabacum]
          Length = 374

 Score =  137 bits (345), Expect = 8e-32
 Identities = 77/157 (49%), Positives = 102/157 (64%)
 Frame = +3

Query: 36  NDESSALQAIKYKRGSLQLLDQRLLPFRTEYLDVPDVKAAWTQIRDMVVRGAPAIGCTGA 215
           N+    L +I Y RGSLQLLDQR LP  T YLD+ D K  W  I++MVVRGAPAI    A
Sbjct: 5   NEGDKTLLSICYNRGSLQLLDQRKLPLETIYLDIQDTKDGWDAIKEMVVRGAPAIAIAAA 64

Query: 216 LAMAVELHALKGAGAAFGSAQEALEFINQTLDFLVTSRPTAVNLADACNRLKAVAATAGA 395
           L++AVE+  L       G++ +A +F++  LD+LV+SRPTAVNL+DA  +LK V   A A
Sbjct: 65  LSLAVEVSNLSSFD---GTSDDASDFLSNKLDYLVSSRPTAVNLSDAAVKLKEVIKKA-A 120

Query: 396 ADGASAVGVCGAVIEAAEAYLAEDIASNKAMGAFGSA 506
                A  V  A IEAAE  L +D+ SNKA+G++G++
Sbjct: 121 TTAKDANSVFQAYIEAAEVMLEDDVTSNKAIGSYGAS 157

>pir||H84471 hypothetical protein At2g05830 [imported] - Arabidopsis thaliana
          Length = 365

 Score =  136 bits (342), Expect = 2e-31
 Identities = 78/156 (50%), Positives = 101/156 (64%)
 Frame = +3

Query: 33  ANDESSALQAIKYKRGSLQLLDQRLLPFRTEYLDVPDVKAAWTQIRDMVVRGAPAIGCTG 212
           + +  + L+AI YK GSLQLLDQR LP  T YL++ D    W+ I++MVVRGAPAI    
Sbjct: 2   SGEGDTTLKAICYKPGSLQLLDQRKLPLETIYLEIRDASDGWSAIQEMVVRGAPAIAIAA 61

Query: 213 ALAMAVELHALKGAGAAFGSAQEALEFINQTLDFLVTSRPTAVNLADACNRLKAVAATAG 392
           AL++AVE+    G     GSA +A+ F+   LD+LV+SRPTAVNLADA  +LK V A A 
Sbjct: 62  ALSLAVEVFNFHGFD---GSASDAVAFLENKLDYLVSSRPTAVNLADAALKLKHVIAKA- 117

Query: 393 AADGASAVGVCGAVIEAAEAYLAEDIASNKAMGAFG 500
            A    A  +  A IEA+E  L +D+ SNKA+G FG
Sbjct: 118 LATATEAKSIFKAYIEASEDMLEDDVVSNKAIGNFG 153

>ref|NP_027726.1| translation initiation factor eIF-2B alpha subunit -related
           [Arabidopsis thaliana] gi|20197503|gb|AAC95160.2|
           putative translation initiation factor eIF-2B alpha
           subunit [Arabidopsis thaliana]
          Length = 374

 Score =  136 bits (342), Expect = 2e-31
 Identities = 78/156 (50%), Positives = 101/156 (64%)
 Frame = +3

Query: 33  ANDESSALQAIKYKRGSLQLLDQRLLPFRTEYLDVPDVKAAWTQIRDMVVRGAPAIGCTG 212
           + +  + L+AI YK GSLQLLDQR LP  T YL++ D    W+ I++MVVRGAPAI    
Sbjct: 2   SGEGDTTLKAICYKPGSLQLLDQRKLPLETIYLEIRDASDGWSAIQEMVVRGAPAIAIAA 61

Query: 213 ALAMAVELHALKGAGAAFGSAQEALEFINQTLDFLVTSRPTAVNLADACNRLKAVAATAG 392
           AL++AVE+    G     GSA +A+ F+   LD+LV+SRPTAVNLADA  +LK V A A 
Sbjct: 62  ALSLAVEVFNFHGFD---GSASDAVAFLENKLDYLVSSRPTAVNLADAALKLKHVIAKA- 117

Query: 393 AADGASAVGVCGAVIEAAEAYLAEDIASNKAMGAFG 500
            A    A  +  A IEA+E  L +D+ SNKA+G FG
Sbjct: 118 LATATEAKSIFKAYIEASEDMLEDDVVSNKAIGNFG 153

>gb|AAM65143.1| putative translation initiation factor eIF-2B alpha subunit
           [Arabidopsis thaliana]
          Length = 374

 Score =  135 bits (340), Expect = 3e-31
 Identities = 78/156 (50%), Positives = 101/156 (64%)
 Frame = +3

Query: 33  ANDESSALQAIKYKRGSLQLLDQRLLPFRTEYLDVPDVKAAWTQIRDMVVRGAPAIGCTG 212
           + +  + L+AI YK GSLQLLDQR LP  T YL++ D    W+ I++MVVRGAPAI    
Sbjct: 2   SGEGDTTLKAICYKPGSLQLLDQRKLPLETIYLEIRDASDGWSAIQEMVVRGAPAIAIAT 61

Query: 213 ALAMAVELHALKGAGAAFGSAQEALEFINQTLDFLVTSRPTAVNLADACNRLKAVAATAG 392
           AL++AVE+    G     GSA +A+ F+   LD+LV+SRPTAVNLADA  +LK V A A 
Sbjct: 62  ALSLAVEVFNFHGFD---GSASDAVAFLENKLDYLVSSRPTAVNLADAALKLKHVIAKA- 117

Query: 393 AADGASAVGVCGAVIEAAEAYLAEDIASNKAMGAFG 500
            A    A  +  A IEA+E  L +D+ SNKA+G FG
Sbjct: 118 LATATEAKSIFKAYIEASEDMLEDDVVSNKAIGNFG 153

>dbj|BAB21393.1| IDI2 [Hordeum vulgare subsp. vulgare]
          Length = 367

 Score =  131 bits (329), Expect = 6e-30
 Identities = 74/154 (48%), Positives = 99/154 (64%)
 Frame = +3

Query: 42  ESSALQAIKYKRGSLQLLDQRLLPFRTEYLDVPDVKAAWTQIRDMVVRGAPAIGCTGALA 221
           ESSALQ+I Y RG+L+LLDQR LP    Y+DV D    W  IRDMVVRGAPAI    AL+
Sbjct: 3   ESSALQSILYGRGALRLLDQRKLPLEEVYVDVKDSADGWNAIRDMVVRGAPAIAIAAALS 62

Query: 222 MAVELHALKGAGAAFGSAQEALEFINQTLDFLVTSRPTAVNLADACNRLKAVAATAGAAD 401
           +AVE++         G+  EA  F+++ L++LV+SRPTAVNL+DA  +L+ + +T  A  
Sbjct: 63  LAVEVNDHN----FIGTPAEAASFVSKKLEYLVSSRPTAVNLSDAATKLQNLVSTT-AET 117

Query: 402 GASAVGVCGAVIEAAEAYLAEDIASNKAMGAFGS 503
              A  +    IEAAE  L +D+A NKA+G  G+
Sbjct: 118 AKDAKSIFQVFIEAAETMLVDDVADNKAIGLHGA 151



EST assemble image


clone accession position
1 LCL085e05_r AV630870 1 317
2 MXL001g08_r BP092984 7 370
3 HCL085f04_r AV644290 12 512




Chlamydomonas reinhardtii
Kazusa DNA Research Institute