KCC002679A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002679A_C01 KCC002679A_c01
catgttcccccaattTACATATCGAGGTATACCTTTATCAAAGGTGCACCCAGTGCAAAC
CATACGATACATTTTACGTATACAACTTGATAACTTGACCAATTCCTTGCACGTTGGCAC
CTAGATCACTGAAGACTAGGTTCATATACCCGCAAGAATGGCTCTTGTATCTGTTGTTGG
TTTCGATGTTGGCAACGATACCTCTTGCGTGGCCCTGGCCCGCAAGAGGGGCATCGATGT
CATCATGAACAAGGAGAGCAAGCGTGAGACGCCTGCCGCGATCAACTTCGGCGAGAAGAT
GCGCTTCCTGGGCACTGACGGCGCCGCCAAGCTGGGCCTGCAGCCGCAGAACACGGTCCA
CCAGCTGAAGCGCATCCTGGGCAAGAAGTTCAAGGACCCGCAGGTCCAGGAGGACATTGC
CCGCCTGCCCTTCGCCGTGATTGAGGGCCCGGACGGCGGCTGCCTCATCAAAGTGCGCTA
CTGCAACGAGGAGGCCGTGTTCACGCCCGAGCAGGTCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002679A_C01 KCC002679A_c01
         (518 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB32902.1| putative heat-shock protein [Oryza sativa (japon...   149  3e-35
ref|NP_178111.1| putative heat-shock protein [Arabidopsis thalia...   140  7e-33
gb|AAL38353.1| putative heat-shock protein [Arabidopsis thaliana]     139  2e-32
ref|NP_850984.1| heat shock protein hsp70, putative [Arabidopsis...   139  2e-32
ref|NP_178110.3| heat shock protein hsp70, putative [Arabidopsis...   139  2e-32

>dbj|BAB32902.1| putative heat-shock protein [Oryza sativa (japonica
           cultivar-group)] gi|13161454|dbj|BAB33024.1| putative
           heat-shock protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 845

 Score =  149 bits (375), Expect = 3e-35
 Identities = 69/117 (58%), Positives = 92/117 (77%)
 Frame = +2

Query: 167 VSVVGFDVGNDTSCVALARKRGIDVIMNKESKRETPAAINFGEKMRFLGTDGAAKLGLQP 346
           +SVVGFD+GN++  VA+AR+RGIDV++N+ESKRETPA + FG+K RF+GT GAA   + P
Sbjct: 1   MSVVGFDLGNESCIVAVARQRGIDVVLNEESKRETPAIVCFGDKQRFIGTAGAASSTMNP 60

Query: 347 QNTVHQLKRILGKKFKDPQVQEDIARLPFAVIEGPDGGCLIKVRYCNEEAVFTPEQV 517
           +N+V Q+KR+LG+K+ DP++Q DIA  PF V EGPDG  L+  RY  EE VFTP Q+
Sbjct: 61  KNSVSQIKRLLGRKYSDPELQRDIAAFPFRVSEGPDGFPLVHARYLGEERVFTPTQL 117

>ref|NP_178111.1| putative heat-shock protein [Arabidopsis thaliana]
           gi|25326734|pir||E96830 hypothetical protein F18B13.1
           [imported] - Arabidopsis thaliana
           gi|5902359|gb|AAD55461.1|AC009322_1 Heat-shock protein
           [Arabidopsis thaliana]
           gi|12324579|gb|AAG52240.1|AC011717_8 putative heat-shock
           protein; 37113-40399 [Arabidopsis thaliana]
           gi|19310473|gb|AAL84971.1| At1g79930/F19K16_11
           [Arabidopsis thaliana] gi|27363244|gb|AAO11541.1|
           At1g79930/F19K16_11 [Arabidopsis thaliana]
          Length = 831

 Score =  140 bits (354), Expect = 7e-33
 Identities = 65/117 (55%), Positives = 87/117 (73%)
 Frame = +2

Query: 167 VSVVGFDVGNDTSCVALARKRGIDVIMNKESKRETPAAINFGEKMRFLGTDGAAKLGLQP 346
           +SVVGFD GN+   VA+AR+RGIDV++N ES RETPA + FG+K RF+GT GAA   + P
Sbjct: 1   MSVVGFDFGNENCLVAVARQRGIDVVLNDESNRETPAIVCFGDKQRFIGTAGAASTMMNP 60

Query: 347 QNTVHQLKRILGKKFKDPQVQEDIARLPFAVIEGPDGGCLIKVRYCNEEAVFTPEQV 517
           +N++ Q+KR++G++F DP++Q DI  LPF+V EGPDG  LI   Y  E+  FTP QV
Sbjct: 61  KNSISQIKRLIGRQFSDPELQRDIKSLPFSVTEGPDGYPLIHANYLGEKRAFTPTQV 117

>gb|AAL38353.1| putative heat-shock protein [Arabidopsis thaliana]
          Length = 831

 Score =  139 bits (350), Expect = 2e-32
 Identities = 65/117 (55%), Positives = 86/117 (72%)
 Frame = +2

Query: 167 VSVVGFDVGNDTSCVALARKRGIDVIMNKESKRETPAAINFGEKMRFLGTDGAAKLGLQP 346
           +SVVGFD GN+   VA+AR+RGIDV++N ES RETPA + FG+K RF+GT GAA   + P
Sbjct: 1   MSVVGFDFGNENCLVAVARQRGIDVVLNDESNRETPAIVCFGDKQRFIGTAGAASTMMNP 60

Query: 347 QNTVHQLKRILGKKFKDPQVQEDIARLPFAVIEGPDGGCLIKVRYCNEEAVFTPEQV 517
           +N++ Q+KR++G++F DP++Q DI  LPF+V EGPDG  LI   Y  E   FTP QV
Sbjct: 61  KNSISQIKRLIGRQFSDPELQRDIKSLPFSVTEGPDGYPLIHANYLGEIRAFTPTQV 117

>ref|NP_850984.1| heat shock protein hsp70, putative [Arabidopsis thaliana]
          Length = 736

 Score =  139 bits (350), Expect = 2e-32
 Identities = 65/117 (55%), Positives = 86/117 (72%)
 Frame = +2

Query: 167 VSVVGFDVGNDTSCVALARKRGIDVIMNKESKRETPAAINFGEKMRFLGTDGAAKLGLQP 346
           +SVVGFD GN+   VA+AR+RGIDV++N ES RETPA + FG+K RF+GT GAA   + P
Sbjct: 1   MSVVGFDFGNENCLVAVARQRGIDVVLNDESNRETPAIVCFGDKQRFIGTAGAASTMMNP 60

Query: 347 QNTVHQLKRILGKKFKDPQVQEDIARLPFAVIEGPDGGCLIKVRYCNEEAVFTPEQV 517
           +N++ Q+KR++G++F DP++Q DI  LPF+V EGPDG  LI   Y  E   FTP QV
Sbjct: 61  KNSISQIKRLIGRQFSDPELQRDIKSLPFSVTEGPDGYPLIHANYLGEIRAFTPTQV 117

>ref|NP_178110.3| heat shock protein hsp70, putative [Arabidopsis thaliana]
           gi|25326730|pir||D96830 probable heat-shock protein,
           41956-44878 [imported] - Arabidopsis thaliana
           gi|12324583|gb|AAG52244.1|AC011717_12 putative
           heat-shock protein; 41956-44878 [Arabidopsis thaliana]
          Length = 736

 Score =  139 bits (350), Expect = 2e-32
 Identities = 65/117 (55%), Positives = 86/117 (72%)
 Frame = +2

Query: 167 VSVVGFDVGNDTSCVALARKRGIDVIMNKESKRETPAAINFGEKMRFLGTDGAAKLGLQP 346
           +SVVGFD GN+   VA+AR+RGIDV++N ES RETPA + FG+K RF+GT GAA   + P
Sbjct: 1   MSVVGFDFGNENCLVAVARQRGIDVVLNDESNRETPAIVCFGDKQRFIGTAGAASTMMNP 60

Query: 347 QNTVHQLKRILGKKFKDPQVQEDIARLPFAVIEGPDGGCLIKVRYCNEEAVFTPEQV 517
           +N++ Q+KR++G++F DP++Q DI  LPF+V EGPDG  LI   Y  E   FTP QV
Sbjct: 61  KNSISQIKRLIGRQFSDPELQRDIKSLPFSVTEGPDGYPLIHANYLGEIRAFTPTQV 117



EST assemble image


clone accession position
1 MXL062c05_r BP096643 1 402
2 LCL065f01_r AV629765 16 509
3 MXL078d11_r BP097608 22 513
4 LCL033a05_r AV627858 22 483
5 MXL099e08_r BP098814 22 513
6 LCL009f09_r AV626471 23 433
7 MXL091f07_r BP098331 23 510
8 MXL047f03_r BP095803 26 406
9 MXL034e01_r BP095015 37 259
10 HCL085b09_r AV644273 37 518
11 MXL028g06_r BP094751 37 318




Chlamydomonas reinhardtii
Kazusa DNA Research Institute