KCC002678A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002678A_C01 KCC002678A_c01
attgcatttggtcatTTGTTCTTGCATTGCGGGTTTGGTTGACGCGACGTGGATCTGAAC
CGCAAGCCCTGACTGGTCCACAAGCGACGAGCGCCACACTTGCACAAGAGTTGCGCGCGT
AGTTTCGTGTCTTCTCTCTGATTGAGCTATCATAGGGACCTAGATACACATAGACTCGCG
TGCAAGCGGTGGACTTCGGCACGATGCAGACCTCCACGCAGCTCATGCAGCTCGGCAGGC
GCCAGCTGCTTAGGTCGCCGCGCGCGTTCTCGTCGCCGGTGAACCTTGGGCGTCGCGCTG
GAGCGCCGGGGCCCGTGTGCAGCACGGCAGCGGGCGCCACCGTCGCCACGGCCGCGGAGC
CGCAAGCCGCTGGTGCGCCGGAGAAGGCGACTGGCGAGAAGGTGGCGCAGCGCAAGCGCA
TCTTGAGTGGTGATCAGCCCACGGGCCGGCCCACGCTGGGCAATTACCTGGGCGCGATGA
AGAACTGGGTGGCGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002678A_C01 KCC002678A_c01
         (495 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_227513.2| similar to Tryptophanyl-tRNA synthetase, mitoch...    50  2e-05
ref|XP_322199.1| hypothetical protein [Neurospora crassa] gi|289...    47  1e-04
ref|NP_850070.1| trytophanyl-tRNA synthetase -related [Arabidops...    47  2e-04
ref|ZP_00094009.1| COG0180: Tryptophanyl-tRNA synthetase [Novosp...    46  3e-04
pir||D84653 probable trytophanyl-tRNA synthetase [imported] - Ar...    46  3e-04

>ref|XP_227513.2| similar to Tryptophanyl-tRNA synthetase, mitochondrial precursor
           (Tryptophan--tRNA ligase) (TrpRS) ((Mt)TrpRS) [Rattus
           norvegicus]
          Length = 594

 Score = 49.7 bits (117), Expect = 2e-05
 Identities = 24/44 (54%), Positives = 30/44 (67%)
 Frame = +3

Query: 360 PQAAGAPEKATGEKVAQRKRILSGDQPTGRPTLGNYLGAMKNWV 491
           P A  AP+K +GE      R+ SG QPTG P LGNYLGA+++WV
Sbjct: 257 PTATAAPQKESGE------RVFSGIQPTGIPHLGNYLGAIESWV 294

>ref|XP_322199.1| hypothetical protein [Neurospora crassa] gi|28918325|gb|EAA28001.1|
            hypothetical protein [Neurospora crassa]
          Length = 1430

 Score = 47.0 bits (110), Expect = 1e-04
 Identities = 25/56 (44%), Positives = 33/56 (58%)
 Frame = +3

Query: 321  STAAGATVATAAEPQAAGAPEKATGEKVAQRKRILSGDQPTGRPTLGNYLGAMKNW 488
            S+   ++  T  E   + +   AT  K AQR+ I SG QPTG P LGNYLGA++ W
Sbjct: 1033 SSCLQSSFFTQTEFTTSQSTPTATPTKKAQRQVIFSGIQPTGIPHLGNYLGALQQW 1088

>ref|NP_850070.1| trytophanyl-tRNA synthetase -related [Arabidopsis thaliana]
           gi|19698905|gb|AAL91188.1| putative trytophanyl-tRNA
           synthetase [Arabidopsis thaliana]
           gi|24899787|gb|AAN65108.1| putative trytophanyl-tRNA
           synthetase [Arabidopsis thaliana]
          Length = 408

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 20/28 (71%), Positives = 24/28 (85%)
 Frame = +3

Query: 411 RKRILSGDQPTGRPTLGNYLGAMKNWVA 494
           +KR++SG QPTG   LGNYLGA+KNWVA
Sbjct: 64  KKRVVSGVQPTGSVHLGNYLGAIKNWVA 91

>ref|ZP_00094009.1| COG0180: Tryptophanyl-tRNA synthetase [Novosphingobium
           aromaticivorans]
          Length = 502

 Score = 45.8 bits (107), Expect = 3e-04
 Identities = 24/44 (54%), Positives = 29/44 (65%)
 Frame = +3

Query: 360 PQAAGAPEKATGEKVAQRKRILSGDQPTGRPTLGNYLGAMKNWV 491
           PQA+  P     +  A R RI+SG QPTG   LGNYLGA++NWV
Sbjct: 148 PQAS--PAARPHQLKASRMRIVSGIQPTGNLHLGNYLGAIRNWV 189

>pir||D84653 probable trytophanyl-tRNA synthetase [imported] - Arabidopsis
           thaliana gi|3643599|gb|AAC42246.1| putative
           trytophanyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 347

 Score = 45.8 bits (107), Expect = 3e-04
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = +3

Query: 414 KRILSGDQPTGRPTLGNYLGAMKNWVA 494
           KR++SG QPTG   LGNYLGA+KNWVA
Sbjct: 3   KRVVSGVQPTGSVHLGNYLGAIKNWVA 29



EST assemble image


clone accession position
1 LCL055f11_r AV629272 1 470
2 HCL084h03_r AV644257 16 495




Chlamydomonas reinhardtii
Kazusa DNA Research Institute