KCC002676A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002676A_C01 KCC002676A_c01
gGCAAATACCCTTAACAATGCGCGTCTAACGTTGCAGCACACAGCTGCACTGCCTCTCTT
GACGAGTTTTCTTTCCGGATTGTATTTCCCTGCCCCTCCCACTGCTTTAGAGCGACAGAA
ATCAACATAGTGTAGGGTTGCGGGCACAGACCCGGTATTTCGGAAACATGTCTTCAGACG
CGCACTACCAGAGTGCCGCGAGCCTGGTGCAGACCGTGCAGCGGTACCTAACCAAGACAA
AGTCACAGGAGCTGCTGATCCGCTCGACAACGCTAATCTCCATCTACTTGCTGGCGTTCT
GCATCCGCCTGTTCTCCGTGCTGCGTTATGAGAGTGTGATCCACGAGTTTGATCCCTACT
TCAACTACCGCTCCACCATCAAGCTCGTGACGGAGGGCTTCTATGAGTTCTGGAACTGGT
TCGATGCGGAGTCGTGGCACCCGCTGGGCCGCGTGGTGGGCGGCACCGTGTACCCCGGTC
TCATGTGGACG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002676A_C01 KCC002676A_c01
         (491 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_174675.2| integral membrane protein -related [Arabidopsis...   141  5e-33
emb|CAE03243.1| OSJNBa0018M05.18 [Oryza sativa (japonica cultiva...   138  4e-32
ref|NP_608425.1| CG1518-PA [Drosophila melanogaster] gi|7295549|...   118  3e-26
gb|AAH52114.1| Similar to Oligosaccharyl transferase 3 [Danio re...   116  1e-25
ref|XP_310665.1| ENSANGP00000020753 [Anopheles gambiae] gi|30177...   116  1e-25

>ref|NP_174675.2| integral membrane protein -related [Arabidopsis thaliana]
           gi|25346688|pir||D86465 probable integral membrane
           protein [imported] - Arabidopsis thaliana
           gi|10086464|gb|AAG12524.1|AC015446_5 Putative integral
           membrane protein [Arabidopsis thaliana]
          Length = 735

 Score =  141 bits (355), Expect = 5e-33
 Identities = 62/86 (72%), Positives = 75/86 (87%)
 Frame = +3

Query: 234 KTKSQELLIRSTTLISIYLLAFCIRLFSVLRYESVIHEFDPYFNYRSTIKLVTEGFYEFW 413
           KTK QELL+R + L  +Y+LAF  RLFSVLRYES+IHEFDPYFNYR+T+ L  +GFYEFW
Sbjct: 33  KTKQQELLLRISILGLVYILAFIARLFSVLRYESMIHEFDPYFNYRTTLFLTEKGFYEFW 92

Query: 414 NWFDAESWHPLGRVVGGTVYPGLMWT 491
           NWFD+ESW+PLGR++GGT+YPGLM T
Sbjct: 93  NWFDSESWYPLGRIIGGTLYPGLMVT 118

>emb|CAE03243.1| OSJNBa0018M05.18 [Oryza sativa (japonica cultivar-group)]
          Length = 721

 Score =  138 bits (347), Expect = 4e-32
 Identities = 65/97 (67%), Positives = 77/97 (79%)
 Frame = +3

Query: 201 SLVQTVQRYLTKTKSQELLIRSTTLISIYLLAFCIRLFSVLRYESVIHEFDPYFNYRSTI 380
           SL   ++    KTK QELL+R + L  IY+LAF +RLFSVLRYES+IHEFDPYFNYR+T+
Sbjct: 9   SLPAPLRSLRLKTKQQELLLRVSALALIYVLAFVVRLFSVLRYESMIHEFDPYFNYRTTL 68

Query: 381 KLVTEGFYEFWNWFDAESWHPLGRVVGGTVYPGLMWT 491
            L   GF EFWNWFD ESW+PLGRVVGGT++PGLM T
Sbjct: 69  FLSDHGFSEFWNWFDFESWYPLGRVVGGTLFPGLMVT 105

>ref|NP_608425.1| CG1518-PA [Drosophila melanogaster] gi|7295549|gb|AAF50861.1|
           CG1518-PA [Drosophila melanogaster]
          Length = 713

 Score =  118 bits (296), Expect = 3e-26
 Identities = 55/92 (59%), Positives = 68/92 (73%)
 Frame = +3

Query: 216 VQRYLTKTKSQELLIRSTTLISIYLLAFCIRLFSVLRYESVIHEFDPYFNYRSTIKLVTE 395
           V R L     QE L++   LI   +L+F  RLFSVLR+ESVIHEFDPYFNYR+T  L  +
Sbjct: 8   VARGLLTWDKQEHLVKLAILILAAVLSFATRLFSVLRFESVIHEFDPYFNYRTTRFLAEQ 67

Query: 396 GFYEFWNWFDAESWHPLGRVVGGTVYPGLMWT 491
           GFY+F NWFD  +W+PLGR++GGT+YPGLM T
Sbjct: 68  GFYKFHNWFDDRAWYPLGRIIGGTIYPGLMLT 99

>gb|AAH52114.1| Similar to Oligosaccharyl transferase 3 [Danio rerio]
          Length = 244

 Score =  116 bits (291), Expect = 1e-25
 Identities = 53/88 (60%), Positives = 65/88 (73%)
 Frame = +3

Query: 228 LTKTKSQELLIRSTTLISIYLLAFCIRLFSVLRYESVIHEFDPYFNYRSTIKLVTEGFYE 407
           LT+    + L+  T L   +L  F  RLF+V+R+ES+IHEFDP+FNYRST  L T GFYE
Sbjct: 43  LTQPAGWQSLLSLTILFLAWLAGFSSRLFAVIRFESIIHEFDPWFNYRSTHHLTTNGFYE 102

Query: 408 FWNWFDAESWHPLGRVVGGTVYPGLMWT 491
           F NWFD  +W+PLGR+VGGTVYPGLM T
Sbjct: 103 FLNWFDERAWYPLGRIVGGTVYPGLMVT 130

>ref|XP_310665.1| ENSANGP00000020753 [Anopheles gambiae] gi|30177913|gb|EAA06273.2|
           ENSANGP00000020753 [Anopheles gambiae str. PEST]
          Length = 701

 Score =  116 bits (291), Expect = 1e-25
 Identities = 52/84 (61%), Positives = 65/84 (76%)
 Frame = +3

Query: 240 KSQELLIRSTTLISIYLLAFCIRLFSVLRYESVIHEFDPYFNYRSTIKLVTEGFYEFWNW 419
           + QE LI+   L +  +L+F  RLFSVLR+ESVIHEFDPYFNYR+T  L  +GFY F NW
Sbjct: 1   EKQESLIKLGILTTAAILSFSTRLFSVLRFESVIHEFDPYFNYRTTKHLAEQGFYNFHNW 60

Query: 420 FDAESWHPLGRVVGGTVYPGLMWT 491
           FD  +W+PLGR++GGT+YPGLM T
Sbjct: 61  FDDRAWYPLGRIIGGTIYPGLMVT 84



EST assemble image


clone accession position
1 MXL006f02_r BP093313 1 292
2 HCL084g02_r AV644249 2 491
3 MXL006f03_r BP093314 10 315




Chlamydomonas reinhardtii
Kazusa DNA Research Institute