KCC002675A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002675A_C01 KCC002675A_c01
TGACCTGAGTACCTGCCGCAAGGCCTACGATGTGGTGCGCGACGTCATCCTCAACCACCC
CGCGCTCGACAAGCCCGAGATCGGCTGGGACTGATCCCGCCTTTGCCGTGTTCATGGGCT
TTGAGCACGAGCGCATCCACATCGAGACCAGCTCTGTGCTCATCCGCGAGCTGCCGCTGA
CGAGCGTGCGCAAGCCGGAGTTCTGGCCCGACTACCACCCCACCAGCCACAACAGCTCGG
CGCCGGTGCCGACGCAGGGCGTGGACTTCCCCGTTAACAACCTGGTGCCGGTAGCTGGCG
AGAAGGTGGTGCTGGGCAAGGACATTGCCTACCCCTCGTTCGGGTGGGACAACGAGTACG
GCGCCAAGGAGGTCAACGTGCAGAGCTTCAAGGCCACGCAGTTCAAGGTGACCAACGGCG
AGTTCCTCAAGTTTGTCAAGTCGAGCGGCTACAGCAACCCCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002675A_C01 KCC002675A_c01
         (462 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_719986.1| conserved domain protein [Shewanella oneidensis...   110  1e-23
ref|ZP_00074495.1| COG1262: Uncharacterized conserved protein [T...   103  9e-22
ref|ZP_00106146.1| COG1262: Uncharacterized conserved protein [N...   100  6e-21
ref|NP_842396.1| Generic methyltransferase [Nitrosomonas europae...    99  2e-20
ref|ZP_00033420.1| COG1262: Uncharacterized conserved protein [B...    64  1e-09

>ref|NP_719986.1| conserved domain protein [Shewanella oneidensis MR-1]
           gi|24350928|gb|AAN57430.1|AE015878_12 conserved domain
           protein [Shewanella oneidensis MR-1]
          Length = 699

 Score =  110 bits (274), Expect = 1e-23
 Identities = 54/122 (44%), Positives = 75/122 (61%)
 Frame = +3

Query: 96  PAFAVFMGFEHERIHIETSSVLIRELPLTSVRKPEFWPDYHPTSHNSSAPVPTQGVDFPV 275
           PA+ + MG EHERIH+ETSSV+IR+LPL  V +   WP+     H +             
Sbjct: 143 PAWVILMGIEHERIHLETSSVIIRQLPLEEVSQSTHWPECQ--DHGA----------IDA 190

Query: 276 NNLVPVAGEKVVLGKDIAYPSFGWDNEYGAKEVNVQSFKATQFKVTNGEFLKFVKSSGYS 455
           N L+ VAG+K+ LGK     ++GWDNEYG K   V  FKA+++ V+N E+L FV++ GY 
Sbjct: 191 NQLIAVAGKKITLGKKEQDETYGWDNEYGNKSFKVADFKASKYLVSNQEYLSFVEAGGYQ 250

Query: 456 NP 461
           +P
Sbjct: 251 SP 252

>ref|ZP_00074495.1| COG1262: Uncharacterized conserved protein [Trichodesmium
           erythraeum IMS101]
          Length = 449

 Score =  103 bits (257), Expect = 9e-22
 Identities = 53/121 (43%), Positives = 74/121 (60%)
 Frame = +3

Query: 96  PAFAVFMGFEHERIHIETSSVLIRELPLTSVRKPEFWPDYHPTSHNSSAPVPTQGVDFPV 275
           P +A+ MG EH+RIHIETSS+L R+LP   +R+P  W  Y PT+            +   
Sbjct: 149 PLWALMMGIEHQRIHIETSSMLFRQLPTEKLRRPSNW-QYAPTNG-----------EVVE 196

Query: 276 NNLVPVAGEKVVLGKDIAYPSFGWDNEYGAKEVNVQSFKATQFKVTNGEFLKFVKSSGYS 455
           N ++ V+G  V LGK    P++GWD EYG ++V V  F A+++ +TN EFL+FVK  GY 
Sbjct: 197 NEMIEVSGGVVKLGKPEDDPTYGWDIEYGDRQVKVAPFVASKYLITNAEFLEFVKGGGYE 256

Query: 456 N 458
           N
Sbjct: 257 N 257

>ref|ZP_00106146.1| COG1262: Uncharacterized conserved protein [Nostoc punctiforme]
          Length = 445

 Score =  100 bits (250), Expect = 6e-21
 Identities = 51/123 (41%), Positives = 76/123 (61%)
 Frame = +3

Query: 90  TDPAFAVFMGFEHERIHIETSSVLIRELPLTSVRKPEFWPDYHPTSHNSSAPVPTQGVDF 269
           T P +A+ MG EH+RIHIETSS+LIR+LP+  V++P+ W  Y P +  ++          
Sbjct: 142 THPLWALMMGIEHQRIHIETSSMLIRQLPIERVKRPQNW-QYAPFNGYTAQ--------- 191

Query: 270 PVNNLVPVAGEKVVLGKDIAYPSFGWDNEYGAKEVNVQSFKATQFKVTNGEFLKFVKSSG 449
             N ++ V G  V LGK    P++GWD +YG + V V+ F A+++ +TN +F  FVK+ G
Sbjct: 192 --NEMIQVIGGVVKLGKAFNDPTYGWDIDYGDRTVEVEPFLASKYLITNADFSYFVKAGG 249

Query: 450 YSN 458
           Y N
Sbjct: 250 YEN 252

>ref|NP_842396.1| Generic methyltransferase [Nitrosomonas europaea ATCC 19718]
           gi|30181121|emb|CAD86313.1| Generic methyltransferase
           [Nitrosomonas europaea ATCC 19718]
          Length = 705

 Score = 99.4 bits (246), Expect = 2e-20
 Identities = 54/119 (45%), Positives = 74/119 (61%)
 Frame = +3

Query: 96  PAFAVFMGFEHERIHIETSSVLIRELPLTSVRKPEFWPDYHPTSHNSSAPVPTQGVDFPV 275
           P +A+ MG EHERIH+ETSSVLIR+  L  V+    W    P  ++ +AP          
Sbjct: 148 PWWAIVMGVEHERIHLETSSVLIRQHKLKYVQSHPAW---QPCRNSGNAPE--------- 195

Query: 276 NNLVPVAGEKVVLGKDIAYPSFGWDNEYGAKEVNVQSFKATQFKVTNGEFLKFVKSSGY 452
           N ++ V   KVVLGKD A P +GWDNEYG  E  + +F+A+++ V+N EFL FV++ GY
Sbjct: 196 NEMILVPAGKVVLGKDKADPVYGWDNEYGHHEAELSAFQASRYLVSNQEFLGFVEARGY 254

>ref|ZP_00033420.1| COG1262: Uncharacterized conserved protein [Burkholderia fungorum]
          Length = 447

 Score = 63.5 bits (153), Expect = 1e-09
 Identities = 37/120 (30%), Positives = 59/120 (48%), Gaps = 4/120 (3%)
 Frame = +3

Query: 114 MGFEHERIHIETSSVLIRELPL----TSVRKPEFWPDYHPTSHNSSAPVPTQGVDFPVNN 281
           +  EH  +H ET + ++ +LPL    T +R+P                V   G    +++
Sbjct: 143 VAIEHRLMHAETLAYMLHQLPLAEKVTELREPV---------------VTRAGPRDALSS 187

Query: 282 LVPVAGEKVVLGKDIAYPSFGWDNEYGAKEVNVQSFKATQFKVTNGEFLKFVKSSGYSNP 461
           +V V     VLG       FGWDNE+G   V+V +F+  ++ VTNG F +F+++ GY  P
Sbjct: 188 MVSVPAGTAVLGMSRDAGRFGWDNEFGEMHVDVPAFEIDRYMVTNGVFREFIEAGGYREP 247



EST assemble image


clone accession position
1 LCL053d03_r AV629161 1 502
2 HCL084g01_r AV644248 41 213




Chlamydomonas reinhardtii
Kazusa DNA Research Institute