KCC002671A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002671A_C01 KCC002671A_c01
tgatgaggtactcgaaggagtgggagaagacCGTGAAGCGGCTGGGTCGCTGGATTGACT
TTGAGAACGACTACAAGACGCTGGACCCCAGTTTCATGGAGTCGGTGTGGTGGGTGTTCA
GCCGCCTGTTCGAGAAGGGGCTGGTCTACCGCGGTTTCAAGGTGATGCCGTTCTCCACGG
CCTGCTCCACGCCGCTGTCCAACTTCGAGGCGGGACTCAACTACAAGGACGTCAGCGACC
CGGCAGTCATGGTGTCCTTCCCCATCGTGGGCGACGCCGACGGCGCCTCGCTGGTGGCCT
GGACTACCACCCCCTGGACCCTGCCCTCCAACGTGGCGCTGTGCGTGCACCCCGAGCTGA
TCTACGTCAAGGCCCGCGACAACGACAAGAAGAAGGTGTACATCGTGGCGGAGGCGCGGC
TGGCGGTGGTGCCGGGCGCTGTGCCCAAGCCCAAGAAGGGAGCCAAGAAGGACGACAAGC
CCGAGGGCGGCTTTGAGATCCTGGCCAAGATGCCCGGCAGCGAGCTGGTGGGGCTGCGCT
ACACGCCGCTATTCCCCTTCTTCTCCGCGCTGGCGGCGGCGGAGGGCAGCAGCAAGGGCG
CCTTCCGTGTGGTCAGCGACACCTACGTCACCGACGACAGCGGCACAGGCGTGGTGCACC
AGGCTCCCGCCTTCGGTGAGGACGACTACCGCGTGTGCCTGGCGCACGGCGTGTGCGAGA
AGGGCGACTCGCTGCCCTGCCCCGTGGACCTCAACGGCCGCTTCACGGAGGAGGTCGGCC
AGTTCAAGGGCCTCTACGTGAAGGACGCGGACAAGGAGATTGTGGCCGTCATCAAGGAGG
CGGGCCGCCTGGTGGAGGCCGGCAGCCTGACGCACAGCTACCCCTTCTGCTGGCGCTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002671A_C01 KCC002671A_c01
         (898 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T04047 isoleucine-tRNA ligase homolog F24G24.120 - Arabidop...   382  e-105
ref|NP_192770.2| isoleucine-tRNA ligase - like protein [Arabidop...   382  e-105
ref|XP_320939.1| ENSANGP00000017588 [Anopheles gambiae] gi|21288...   369  e-101
ref|NP_742012.1| isoleucine-tRNA synthetase [Mus musculus] gi|26...   356  3e-97
gb|AAH56826.1| Isoleucine-tRNA synthetase [Danio rerio]               355  6e-97

>pir||T04047 isoleucine-tRNA ligase homolog F24G24.120 - Arabidopsis thaliana
            gi|4538961|emb|CAB39785.1| isoleucine-tRNA ligase-like
            protein [Arabidopsis thaliana] gi|7267729|emb|CAB78155.1|
            isoleucine-tRNA ligase-like protein [Arabidopsis
            thaliana]
          Length = 1254

 Score =  382 bits (980), Expect = e-105
 Identities = 185/313 (59%), Positives = 226/313 (72%), Gaps = 16/313 (5%)
 Frame = +3

Query: 6    RYSKEWEKTVKRLGRWIDFENDYKTLDPSFMESVWWVFSRLFEKGLVYRGFKVMPFSTAC 185
            RY  EWEK + R GRWIDF+NDYKT+D  FMESVWWVFS+L+EK LVYRGFKVMP+ST C
Sbjct: 127  RYVAEWEKVITRCGRWIDFKNDYKTMDLPFMESVWWVFSQLWEKNLVYRGFKVMPYSTGC 186

Query: 186  STPLSNFEAGLNYKDVSDPAVMVSFPIVGDADGASLVAWTTTPWTLPSNVALCVHPELIY 365
             TPLSNFEAG NYK+V DP +MV+FP++GD D A+ VAWTTTPWTLPSN+ALCV+ + +Y
Sbjct: 187  KTPLSNFEAGQNYKEVPDPEIMVTFPVIGDQDNAAFVAWTTTPWTLPSNLALCVNAKFVY 246

Query: 366  VKARDNDKKKVYIVAEARLAVVPGAVPKPK----------------KGAKKDDKPEGGFE 497
            VK R+ +  KVYIVAE+RL+ +P   PK K                KGAK +   +  +E
Sbjct: 247  VKVRNKNTGKVYIVAESRLSALPTDKPKAKLSNGPAGDTKKANPKAKGAKPESAAD-SYE 305

Query: 498  ILAKMPGSELVGLRYTPLFPFFSALAAAEGSSKGAFRVVSDTYVTDDSGTGVVHQAPAFG 677
            +L K  G+ LVG +Y PLF +FS        S  AFRVV+D YVTDDSGTG+VH APAFG
Sbjct: 306  VLEKFNGASLVGKKYEPLFDYFSDF------SSEAFRVVADDYVTDDSGTGIVHCAPAFG 359

Query: 678  EDDYRVCLAHGVCEKGDSLPCPVDLNGRFTEEVGQFKGLYVKDADKEIVAVIKEAGRLVE 857
            EDDYRVCL + + +KG++L   VD +G FTE +  F G YVKDADK+I+  +K  GRLV+
Sbjct: 360  EDDYRVCLLNKIIKKGENLVVAVDDDGLFTERITHFSGRYVKDADKDIIEAVKAKGRLVK 419

Query: 858  AGSLTHSYPFCWR 896
             GS THSYPFCWR
Sbjct: 420  TGSFTHSYPFCWR 432

>ref|NP_192770.2| isoleucine-tRNA ligase - like protein [Arabidopsis thaliana]
          Length = 1190

 Score =  382 bits (980), Expect = e-105
 Identities = 185/313 (59%), Positives = 226/313 (72%), Gaps = 16/313 (5%)
 Frame = +3

Query: 6    RYSKEWEKTVKRLGRWIDFENDYKTLDPSFMESVWWVFSRLFEKGLVYRGFKVMPFSTAC 185
            RY  EWEK + R GRWIDF+NDYKT+D  FMESVWWVFS+L+EK LVYRGFKVMP+ST C
Sbjct: 127  RYVAEWEKVITRCGRWIDFKNDYKTMDLPFMESVWWVFSQLWEKNLVYRGFKVMPYSTGC 186

Query: 186  STPLSNFEAGLNYKDVSDPAVMVSFPIVGDADGASLVAWTTTPWTLPSNVALCVHPELIY 365
             TPLSNFEAG NYK+V DP +MV+FP++GD D A+ VAWTTTPWTLPSN+ALCV+ + +Y
Sbjct: 187  KTPLSNFEAGQNYKEVPDPEIMVTFPVIGDQDNAAFVAWTTTPWTLPSNLALCVNAKFVY 246

Query: 366  VKARDNDKKKVYIVAEARLAVVPGAVPKPK----------------KGAKKDDKPEGGFE 497
            VK R+ +  KVYIVAE+RL+ +P   PK K                KGAK +   +  +E
Sbjct: 247  VKVRNKNTGKVYIVAESRLSALPTDKPKAKLSNGPAGDTKKANPKAKGAKPESAAD-SYE 305

Query: 498  ILAKMPGSELVGLRYTPLFPFFSALAAAEGSSKGAFRVVSDTYVTDDSGTGVVHQAPAFG 677
            +L K  G+ LVG +Y PLF +FS        S  AFRVV+D YVTDDSGTG+VH APAFG
Sbjct: 306  VLEKFNGASLVGKKYEPLFDYFSDF------SSEAFRVVADDYVTDDSGTGIVHCAPAFG 359

Query: 678  EDDYRVCLAHGVCEKGDSLPCPVDLNGRFTEEVGQFKGLYVKDADKEIVAVIKEAGRLVE 857
            EDDYRVCL + + +KG++L   VD +G FTE +  F G YVKDADK+I+  +K  GRLV+
Sbjct: 360  EDDYRVCLLNKIIKKGENLVVAVDDDGLFTERITHFSGRYVKDADKDIIEAVKAKGRLVK 419

Query: 858  AGSLTHSYPFCWR 896
             GS THSYPFCWR
Sbjct: 420  TGSFTHSYPFCWR 432

>ref|XP_320939.1| ENSANGP00000017588 [Anopheles gambiae] gi|21288707|gb|EAA01000.1|
           ENSANGP00000017588 [Anopheles gambiae str. PEST]
          Length = 1242

 Score =  369 bits (947), Expect = e-101
 Identities = 178/298 (59%), Positives = 219/298 (72%)
 Frame = +3

Query: 3   MRYSKEWEKTVKRLGRWIDFENDYKTLDPSFMESVWWVFSRLFEKGLVYRGFKVMPFSTA 182
           MRY+ EWE+ V R+GRWIDF+NDYKTL P +MES+WWVF +L+ KG VY+G KVMP+STA
Sbjct: 157 MRYANEWEQIVGRMGRWIDFKNDYKTLYPWYMESIWWVFKQLYAKGFVYQGVKVMPYSTA 216

Query: 183 CSTPLSNFEAGLNYKDVSDPAVMVSFPIVGDADGASLVAWTTTPWTLPSNVALCVHPELI 362
           C+T LSNFE+G NYK+V+DPAV VSFPIVGD DGA+LV WTTTPWTLPSN+A CVHPEL+
Sbjct: 217 CTTALSNFESGQNYKEVTDPAVFVSFPIVGDKDGAALVGWTTTPWTLPSNLACCVHPELV 276

Query: 363 YVKARDNDKKKVYIVAEARLAVVPGAVPKPKKGAKKDDKPEGGFEILAKMPGSELVGLRY 542
           Y K R+    KVYI+ E R+  +        KG      PE  + IL   PGS+LVG+RY
Sbjct: 277 YAKVRETKTGKVYIMMECRIESL-------LKG------PE-NYTILESFPGSKLVGVRY 322

Query: 543 TPLFPFFSALAAAEGSSKGAFRVVSDTYVTDDSGTGVVHQAPAFGEDDYRVCLAHGVCEK 722
            PLF +F    +        FRV++DTYVT++SGTGVVHQAP FGEDDYRVCLA+GV ++
Sbjct: 323 EPLFDYFRKYESV------GFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLANGVIKR 376

Query: 723 GDSLPCPVDLNGRFTEEVGQFKGLYVKDADKEIVAVIKEAGRLVEAGSLTHSYPFCWR 896
              + CPVD +G+F E V  F G YVKDADK I+ ++KE GRLV A  + H+YPFCWR
Sbjct: 377 DQEIVCPVDASGKFVEPVTDFAGQYVKDADKAIIKLLKERGRLVLASQVKHNYPFCWR 434

>ref|NP_742012.1| isoleucine-tRNA synthetase [Mus musculus]
           gi|26352902|dbj|BAC40081.1| unnamed protein product [Mus
           musculus]
          Length = 1262

 Score =  356 bits (914), Expect = 3e-97
 Identities = 177/299 (59%), Positives = 216/299 (72%), Gaps = 1/299 (0%)
 Frame = +3

Query: 3   MRYSKEWEKTVKRLGRWIDFENDYKTLDPSFMESVWWVFSRLFEKGLVYRGFKVMPFSTA 182
           MRYS EW+ TV RLGRWIDF+NDYKTL P FMESVWWVF +L++KGLVYRG KVMPFSTA
Sbjct: 125 MRYSAEWKSTVTRLGRWIDFDNDYKTLYPQFMESVWWVFKQLYDKGLVYRGVKVMPFSTA 184

Query: 183 CSTPLSNFEAGLNYKDVSDPAVMVSFPIVGDADGASLVAWTTTPWTLPSNVALCVHPELI 362
           C TPLSNFE+  NYKDV DP+V V+FP+  D +  SLVAWTTTPWTLPSN+ALCV+PE+ 
Sbjct: 185 CGTPLSNFESNQNYKDVQDPSVFVTFPLEED-ENTSLVAWTTTPWTLPSNLALCVNPEIQ 243

Query: 363 YVKARDNDKKKVYIVAEARLAVVPGAVPKPKKGAKKDDKPEGGFEILAKMPGSELVGLRY 542
           YVK +D  + K++I+ EARL+ +               K E  +EIL + PG+ L G +Y
Sbjct: 244 YVKIKDVARGKLFILTEARLSAL--------------YKQESDYEILERFPGASLKGKKY 289

Query: 543 TPLFPFFSALAAAEGSSKGAFRVVSDTYVTDDSGTGVVHQAPAFGEDDYRVCLAHGVCEK 722
            PLF +F      +    GAF V+ D YV D+ GTGVVHQAP FG DD+RVC+   + +K
Sbjct: 290 KPLFDYF-----IKCKENGAFTVLVDHYVKDEEGTGVVHQAPYFGADDHRVCMDFNIIQK 344

Query: 723 GDSLP-CPVDLNGRFTEEVGQFKGLYVKDADKEIVAVIKEAGRLVEAGSLTHSYPFCWR 896
            DS+P CPVD +G FTEEV  F G YVKDADK I+ ++KE GRL+ AG+ THSYPFCWR
Sbjct: 345 -DSVPVCPVDASGCFTEEVTHFVGQYVKDADKNIIRMLKEQGRLLAAGTFTHSYPFCWR 402

>gb|AAH56826.1| Isoleucine-tRNA synthetase [Danio rerio]
          Length = 1271

 Score =  355 bits (911), Expect = 6e-97
 Identities = 172/298 (57%), Positives = 210/298 (69%)
 Frame = +3

Query: 3   MRYSKEWEKTVKRLGRWIDFENDYKTLDPSFMESVWWVFSRLFEKGLVYRGFKVMPFSTA 182
           MRY+ EWE +V+R+GRWIDF NDYKTL P FME+VWWVF +L++ GLVYRG KVMPFSTA
Sbjct: 125 MRYADEWENSVRRMGRWIDFRNDYKTLYPWFMETVWWVFKQLYDSGLVYRGVKVMPFSTA 184

Query: 183 CSTPLSNFEAGLNYKDVSDPAVMVSFPIVGDADGASLVAWTTTPWTLPSNVALCVHPELI 362
           C+TPLSNFEA  NYKDV DP+V+V+FP++ D    SL+AWTTTPWTLPSN+ALCV+PELI
Sbjct: 185 CNTPLSNFEANQNYKDVQDPSVIVNFPLLED-PSVSLIAWTTTPWTLPSNLALCVNPELI 243

Query: 363 YVKARDNDKKKVYIVAEARLAVVPGAVPKPKKGAKKDDKPEGGFEILAKMPGSELVGLRY 542
           YV+ +DN  +K+YI+ EARL  +               K +  + IL + PG  L G +Y
Sbjct: 244 YVRVKDNSSQKIYIMMEARLVAL--------------FKSDSEYTILERFPGKTLKGKKY 289

Query: 543 TPLFPFFSALAAAEGSSKGAFRVVSDTYVTDDSGTGVVHQAPAFGEDDYRVCLAHGVCEK 722
            PLF +F      +    GAF VV D YV DD GTGVVHQAP FG DDYRVC+ + + ++
Sbjct: 290 KPLFEYF-----IKCKETGAFSVVMDNYVRDDDGTGVVHQAPYFGADDYRVCMEYDIIQR 344

Query: 723 GDSLPCPVDLNGRFTEEVGQFKGLYVKDADKEIVAVIKEAGRLVEAGSLTHSYPFCWR 896
             +  CPVD +G FT EV  F G YVKDADK I+  +KE GRLV A S  HSYPFCWR
Sbjct: 345 DSAPICPVDPSGIFTPEVTHFAGQYVKDADKNIIKWLKENGRLVSASSFKHSYPFCWR 402



EST assemble image


clone accession position
1 MXL038g08_r BP095246 1 442
2 LCL088c04_r AV631061 32 420
3 HCL083c03_r AV644168 190 679
4 HCL099f02_r AV645207 570 898




Chlamydomonas reinhardtii
Kazusa DNA Research Institute