KCC002663A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002663A_C01 KCC002663A_c01
CACTTAAACCCACAAGACATTCCACAGAAAGCATCATATTGTCTTCACAGCGCTAGCACC
TGACTTTGACAGATTTACGTCCACACTAGATTCCTCTTGACGCCGACTGAGGCCCTTCTT
GCATTTACCTTTGATTACCTTCGCATAGTTGTCCTATCAACCGGCGGGCCTGCGTTTAGG
TGCCCCGGGAAACATGCAGGACTTCAAAGGCATAAGCGAGAAGTTCCGCATGAACCTTGT
ACACCATGACGGTGGCACCGATCGTGTGGTGGTCCAGATAGGCCTGGACGGCCTCAAGCT
GCTGAATGCCTCCGACAACAGGACCATGCGGTCCTACGAGCTGGGCCATATCAGCCGCTG
GCAGTCGCGCGGTGGCAGCCTAATTCTCTACACCCGAACACCGGTGGACGTGGAGGAGCG
GCAAACCACTCTCTCAGCAGATGACAGCACCGTGCGGAACGCTCTGGACACGCTCACCTG
CTGCTGCATGCAGCTCGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002663A_C01 KCC002663A_c01
         (499 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAA61964.1| hypothetical protein [Phoenix dactylifera]             68  5e-11
pir||H86334 T20H2.10 protein - Arabidopsis thaliana gi|8778986|g...    68  7e-11
ref|NP_564103.1| expressed protein [Arabidopsis thaliana] gi|136...    68  7e-11
gb|AAK96734.1| Unknown protein [Arabidopsis thaliana]                  68  7e-11
dbj|BAC83151.1| unknown protein [Oryza sativa (japonica cultivar...    66  2e-10

>emb|CAA61964.1| hypothetical protein [Phoenix dactylifera]
          Length = 366

 Score = 68.2 bits (165), Expect = 5e-11
 Identities = 38/103 (36%), Positives = 61/103 (58%), Gaps = 3/103 (2%)
 Frame = +2

Query: 197 QDFKGISEKFRMNLVHHDGG--TDRVVVQIGLDGLKLLNASDNRTMRSYELGHISRWQSR 370
           QD K   +KF + L+   GG  T  V+ QIGLDG+++L+ S +RT+R Y L  ++RW   
Sbjct: 64  QDVKNGVQKFPVKLLAGGGGQSTMDVLCQIGLDGIRMLDPSSSRTLRIYPLETVTRWDVT 123

Query: 371 GGSLI-LYTRTPVDVEERQTTLSADDSTVRNALDTLTCCCMQL 496
             S+   ++++ VD+E R+  L ++  T    LDT+T   +QL
Sbjct: 124 DSSIFTFWSKSSVDIEPRRIRLQSNSYTTNTILDTVTAATVQL 166

>pir||H86334 T20H2.10 protein - Arabidopsis thaliana
           gi|8778986|gb|AAF79901.1|AC022472_10 Contains similarity
           to an unknown mRNA from Triticum sativum gb|AF004816 and
           contains a Lipase/Acylhydrolase with GDSL-like motif
           PF|00657 and FYVE zinc finger PF|01363 domain.  ESTs
           gb|AV541158, gb|AA394699, gb|AI993442, gb|T88167,
           gb|BE038227, gb|AI993489, gb|T88521 come from this gene.
           [Arabidopsis thaliana]
          Length = 967

 Score = 67.8 bits (164), Expect = 7e-11
 Identities = 38/102 (37%), Positives = 62/102 (60%), Gaps = 3/102 (2%)
 Frame = +2

Query: 197 QDFKGISEKFRMNLVHHDGG--TDRVVVQIGLDGLKLLNASDNRTMRSYELGHISRWQSR 370
           +D  G  +KFR+ L+    G  T  V+ QIGLDGL++L+ S +RT+R Y L +I+R +  
Sbjct: 307 EDSTGGVQKFRVKLLAETYGQTTTDVLCQIGLDGLRMLDPSTSRTLRIYPLENITRCEKL 366

Query: 371 GGSLI-LYTRTPVDVEERQTTLSADDSTVRNALDTLTCCCMQ 493
             S++  +++TPVD+E ++  L ++  T    LDT+T    Q
Sbjct: 367 DSSILAFWSKTPVDIEAKRIRLQSNSYTTNTLLDTVTAAMFQ 408

>ref|NP_564103.1| expressed protein [Arabidopsis thaliana]
           gi|13605833|gb|AAK32902.1|AF367315_1 At1g20110/T20H2_10
           [Arabidopsis thaliana]
           gi|16226228|gb|AAL16109.1|AF428277_1 At1g20110/T20H2_10
           [Arabidopsis thaliana] gi|23506043|gb|AAN28881.1|
           At1g20110/T20H2_10 [Arabidopsis thaliana]
          Length = 601

 Score = 67.8 bits (164), Expect = 7e-11
 Identities = 38/102 (37%), Positives = 62/102 (60%), Gaps = 3/102 (2%)
 Frame = +2

Query: 197 QDFKGISEKFRMNLVHHDGG--TDRVVVQIGLDGLKLLNASDNRTMRSYELGHISRWQSR 370
           +D  G  +KFR+ L+    G  T  V+ QIGLDGL++L+ S +RT+R Y L +I+R +  
Sbjct: 307 EDSTGGVQKFRVKLLAETYGQTTTDVLCQIGLDGLRMLDPSTSRTLRIYPLENITRCEKL 366

Query: 371 GGSLI-LYTRTPVDVEERQTTLSADDSTVRNALDTLTCCCMQ 493
             S++  +++TPVD+E ++  L ++  T    LDT+T    Q
Sbjct: 367 DSSILAFWSKTPVDIEAKRIRLQSNSYTTNTLLDTVTAAMFQ 408

>gb|AAK96734.1| Unknown protein [Arabidopsis thaliana]
          Length = 429

 Score = 67.8 bits (164), Expect = 7e-11
 Identities = 38/102 (37%), Positives = 62/102 (60%), Gaps = 3/102 (2%)
 Frame = +2

Query: 197 QDFKGISEKFRMNLVHHDGG--TDRVVVQIGLDGLKLLNASDNRTMRSYELGHISRWQSR 370
           +D  G  +KFR+ L+    G  T  V+ QIGLDGL++L+ S +RT+R Y L +I+R +  
Sbjct: 307 EDSTGGVQKFRVKLLAETYGQTTTDVLCQIGLDGLRMLDPSTSRTLRIYPLENITRCEKL 366

Query: 371 GGSLI-LYTRTPVDVEERQTTLSADDSTVRNALDTLTCCCMQ 493
             S++  +++TPVD+E ++  L ++  T    LDT+T    Q
Sbjct: 367 DSSILAFWSKTPVDIEAKRIRLQSNSYTTNTLLDTVTAAMFQ 408

>dbj|BAC83151.1| unknown protein [Oryza sativa (japonica cultivar-group)]
          Length = 517

 Score = 66.2 bits (160), Expect = 2e-10
 Identities = 35/101 (34%), Positives = 60/101 (58%), Gaps = 2/101 (1%)
 Frame = +2

Query: 197 QDFKGISEKFRMNLVHHDGGTDR-VVVQIGLDGLKLLNASDNRTMRSYELGHISRWQSRG 373
           +D  G ++KFR+ L+    G+   V+ QIGLDG+++L+ S +RT+R Y L  ++RW    
Sbjct: 222 EDANGGAQKFRVKLLPEGAGSPTDVLCQIGLDGIRMLDPSTSRTLRIYPLDTLTRWDVLD 281

Query: 374 GSLI-LYTRTPVDVEERQTTLSADDSTVRNALDTLTCCCMQ 493
            ++   + +TPVD E ++  L ++  T    LDT+T   +Q
Sbjct: 282 STVFAFWAKTPVDFEAKRIRLKSNSYTSNTLLDTVTAATVQ 322



EST assemble image


clone accession position
1 LC044c02_r AV622099 1 499
2 HCL081a04_r AV644059 1 268
3 LCL089b01_r AV631116 11 356
4 LCL044c06_r AV628595 13 288




Chlamydomonas reinhardtii
Kazusa DNA Research Institute