KCC002653A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002653A_C01 KCC002653A_c01
taaatgctttGTATCGTTATCTCCTTCGACCACCTTGAATTGCCTGCGGGCCCCTTGACC
TCAGCTGACGCAGCCATGCTTCTGCACGCGCCGCATTTTATGCCCCTGGGGCAGCGTAGC
TCGATACGGCGTGGAAATTTGGTGGTTGCGAACGTAGCGTGCACGGCGGGCAAGAACCCG
ACGTCGCGGCCAGCGAAACGCTCCAAGGTGGAGTTCATCAAGGAGAACAGCGACCACCTG
CGCCACCCGCTCATGGAAGAGCTGGTGAACGACGAGACATTCATCACCGAAGACTCGGTG
CAGCTGATGAAATTTCACGGCTCCTACCAACAAGACAACCGCGAAAAACGTGCCTTCGGC
CAGGGAAAAGCTTACTCATTCCTGATGCGGACTCGGCAGCCCGCTGGCGTTGTGCCGAAC
CGGCTCTACCTGGTGATGGATGACCTCGCCGACCAGTTCGGCAACGGCACGCTGCGCCTG
ACCACGCGCCAGGCCTACCAGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002653A_C01 KCC002653A_c01
         (502 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK82552.1| AT5g04590/T32M21_190 [Arabidopsis thaliana] gi|23...   135  4e-31
ref|NP_196079.1| sulphite reductase [Arabidopsis thaliana] gi|11...   135  4e-31
pir||S71437 sulfite reductase (ferredoxin) (EC 1.8.7.1) precurso...   135  4e-31
emb|CAA71239.1| sulfite reductase [Arabidopsis thaliana]              134  5e-31
ref|NP_440189.1| ferredoxin-sulfite reductase [Synechocystis sp....   133  1e-30

>gb|AAK82552.1| AT5g04590/T32M21_190 [Arabidopsis thaliana]
           gi|23308385|gb|AAN18162.1| At5g04590/T32M21_190
           [Arabidopsis thaliana]
          Length = 416

 Score =  135 bits (339), Expect = 4e-31
 Identities = 79/166 (47%), Positives = 106/166 (63%), Gaps = 20/166 (12%)
 Frame = +1

Query: 64  ADAAMLLHAPHFMPLGQRSSIR-----------RGNLVVANVACTAGKNP---TSRPAK- 198
           A AA +  A   + LG+  ++R           RG + V   A ++  +P    S PAK 
Sbjct: 9   AGAATVFTADQKIRLGRLDALRSSHSVFLGRYGRGGVPVPPSASSSSSSPIQAVSTPAKP 68

Query: 199 -----RSKVEFIKENSDHLRHPLMEELVNDETFITEDSVQLMKFHGSYQQDNREKRAFGQ 363
                RSKVE IKE S+ +R+PL EEL+ +   + E +VQL+KFHGSYQQ NRE+R    
Sbjct: 69  ETATKRSKVEIIKEKSNFIRYPLNEELLTEAPNVNESAVQLIKFHGSYQQYNREERG--- 125

Query: 364 GKAYSFLMRTRQPAGVVPNRLYLVMDDLADQFGNGTLRLTTRQAYQ 501
           G++YSF++RT+ P+G VPN+LYL MDDLAD+FG GTLRLTTRQ +Q
Sbjct: 126 GRSYSFMLRTKNPSGKVPNQLYLTMDDLADEFGIGTLRLTTRQTFQ 171

>ref|NP_196079.1| sulphite reductase [Arabidopsis thaliana] gi|11254834|pir||T48455
           sulfite reductase (ferredoxin) (EC 1.8.7.1) precursor
           [similarity] - Arabidopsis thaliana
           gi|7406463|emb|CAB85565.1| sulphite reductase
           [Arabidopsis thaliana]
           gi|11762202|gb|AAG40379.1|AF325027_1 AT5g04590
           [Arabidopsis thaliana]
          Length = 642

 Score =  135 bits (339), Expect = 4e-31
 Identities = 79/166 (47%), Positives = 106/166 (63%), Gaps = 20/166 (12%)
 Frame = +1

Query: 64  ADAAMLLHAPHFMPLGQRSSIR-----------RGNLVVANVACTAGKNP---TSRPAK- 198
           A AA +  A   + LG+  ++R           RG + V   A ++  +P    S PAK 
Sbjct: 9   AGAATVFTADQKIRLGRLDALRSSHSVFLGRYGRGGVPVPPSASSSSSSPIQAVSTPAKP 68

Query: 199 -----RSKVEFIKENSDHLRHPLMEELVNDETFITEDSVQLMKFHGSYQQDNREKRAFGQ 363
                RSKVE IKE S+ +R+PL EEL+ +   + E +VQL+KFHGSYQQ NRE+R    
Sbjct: 69  ETATKRSKVEIIKEKSNFIRYPLNEELLTEAPNVNESAVQLIKFHGSYQQYNREERG--- 125

Query: 364 GKAYSFLMRTRQPAGVVPNRLYLVMDDLADQFGNGTLRLTTRQAYQ 501
           G++YSF++RT+ P+G VPN+LYL MDDLAD+FG GTLRLTTRQ +Q
Sbjct: 126 GRSYSFMLRTKNPSGKVPNQLYLTMDDLADEFGIGTLRLTTRQTFQ 171

>pir||S71437 sulfite reductase (ferredoxin) (EC 1.8.7.1) precursor - Arabidopsis
           thaliana gi|804953|emb|CAA89154.1| sulfite reductase
           [Arabidopsis thaliana]
          Length = 642

 Score =  135 bits (339), Expect = 4e-31
 Identities = 79/166 (47%), Positives = 106/166 (63%), Gaps = 20/166 (12%)
 Frame = +1

Query: 64  ADAAMLLHAPHFMPLGQRSSIR-----------RGNLVVANVACTAGKNP---TSRPAK- 198
           A AA +  A   + LG+  ++R           RG + V   A ++  +P    S PAK 
Sbjct: 9   AGAATVFTADQKIRLGRLDALRSSHSVFLGRYGRGGVPVPPSASSSSSSPIQAVSTPAKP 68

Query: 199 -----RSKVEFIKENSDHLRHPLMEELVNDETFITEDSVQLMKFHGSYQQDNREKRAFGQ 363
                RSKVE IKE S+ +R+PL EEL+ +   + E +VQL+KFHGSYQQ NRE+R    
Sbjct: 69  ETATKRSKVEIIKEKSNFIRYPLNEELLTEAPNVNESAVQLIKFHGSYQQYNREERG--- 125

Query: 364 GKAYSFLMRTRQPAGVVPNRLYLVMDDLADQFGNGTLRLTTRQAYQ 501
           G++YSF++RT+ P+G VPN+LYL MDDLAD+FG GTLRLTTRQ +Q
Sbjct: 126 GRSYSFMLRTKNPSGKVPNQLYLTMDDLADEFGIGTLRLTTRQTFQ 171

>emb|CAA71239.1| sulfite reductase [Arabidopsis thaliana]
          Length = 640

 Score =  134 bits (338), Expect = 5e-31
 Identities = 77/164 (46%), Positives = 107/164 (64%), Gaps = 18/164 (10%)
 Frame = +1

Query: 64  ADAAMLLHAPHFMPLGQRSSIR-----------RGNLVVANVACTAGKNP----TSRP-- 192
           A AA +  A   + LG+  ++R           RG + V   A ++  +P    +++P  
Sbjct: 9   AGAATVFTADQKIRLGRLDALRSSHSVFLGRYGRGGVPVPPSASSSSSSPIQAVSTKPET 68

Query: 193 -AKRSKVEFIKENSDHLRHPLMEELVNDETFITEDSVQLMKFHGSYQQDNREKRAFGQGK 369
             KRSKVE IKE S+ +R+PL EEL+ +   + E +VQL+KFHGSYQQ NRE+R    G+
Sbjct: 69  ATKRSKVEIIKEKSNFIRYPLNEELLTEAPNVNESAVQLIKFHGSYQQYNREERG---GR 125

Query: 370 AYSFLMRTRQPAGVVPNRLYLVMDDLADQFGNGTLRLTTRQAYQ 501
           +YSF++RT+ P+G VPN+LYL MDDLAD+FG GTLRLTTRQ +Q
Sbjct: 126 SYSFMLRTKNPSGKVPNQLYLTMDDLADEFGIGTLRLTTRQTFQ 169

>ref|NP_440189.1| ferredoxin-sulfite reductase [Synechocystis sp. PCC 6803]
           gi|2499191|sp|P72854|SIR_SYNY3 Sulfite reductase
           (Ferredoxin) gi|7432743|pir||S74718 sulfite reductase
           (ferredoxin) (EC 1.8.7.1) - Synechocystis sp. (strain
           PCC 6803) gi|1651943|dbj|BAA16869.1| ferredoxin-sulfite
           reductase [Synechocystis sp. PCC 6803]
          Length = 635

 Score =  133 bits (335), Expect = 1e-30
 Identities = 62/108 (57%), Positives = 80/108 (73%)
 Frame = +1

Query: 178 PTSRPAKRSKVEFIKENSDHLRHPLMEELVNDETFITEDSVQLMKFHGSYQQDNREKRAF 357
           PT+ P K SKVE IKE S++LR PL  EL+ND  + T+D+VQ++KFHGSYQQDNR+ R  
Sbjct: 5   PTAAPRKPSKVEGIKERSNYLREPLATELLNDANYFTDDAVQILKFHGSYQQDNRDNRVK 64

Query: 358 GQGKAYSFLMRTRQPAGVVPNRLYLVMDDLADQFGNGTLRLTTRQAYQ 501
           GQ K Y F++RTR P G++P +LY  +DDL+   GN TLR+TTRQ  Q
Sbjct: 65  GQEKDYQFMLRTRNPGGLIPAQLYTALDDLSKTHGNQTLRVTTRQGLQ 112



EST assemble image


clone accession position
1 HCL078a08_r AV643897 1 502
2 MXL010f03_r BP093591 11 318
3 MXL065a08_r BP096797 18 409




Chlamydomonas reinhardtii
Kazusa DNA Research Institute