KCC002651A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002651A_C01 KCC002651A_c01
ctcaagaattggacgccaagccagctattctataagcttgCTACCAGTTCCTCCACCTGA
TAGGATCGCTAGGCTTGATATCTGGCGACAACCCTTGCAGATTCTTGGGCCGTTTCTTCG
CTCCGCTCCTGCTCCACGTCACGTATCAGCACATACCACTGCAAATACTCGACTGCGATA
GCTGGGGGCGAGCGAGAAGTTTCTAGCCCGGAATGAGCGTCAAAAGCGCTGCTATGAGGG
ACGCTGCCGACAGTGAAGAGTTTGAGGACATGAGCGAGGACTATGAGGAGGCCTCGGATG
CGAGCTACGAGTACGAGGAAGGCTCGGACGACGATGCCTGCCACATGGACGCCGCGCACG
GCGACGCGGGGCCTTCTTCGTCTGCCGGGCCAGGCTGGAGCGTGCTTAACCAAGATGCAA
TTGTCAAGCTACAGGCGGAGGCCGTTGCCGACGTCGTTGCCATCCTAGGCGTGAAGTCCT
CGGTGGCCAAGACTGTGCTGATGTATTTCCGTTGGGACAAGGAGGCGCTCATGAGCAAAG
TGGCTGAGCGCGATCCGGAGTCGGTCCTGAAGCAAGCAGGCGTGGCAATCACGGACGCGG
GGTCAGCGGGGCCAAATGGGCAACAAGGTGGCCCCATTATGTGCCGGGTGTGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002651A_C01 KCC002651A_c01
         (653 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T04783 hypothetical protein F10M10.140 - Arabidopsis thalia...    60  3e-08
ref|NP_567966.1| expressed protein [Arabidopsis thaliana] gi|152...    60  3e-08
ref|NP_189408.1| expressed protein [Arabidopsis thaliana] gi|929...    55  7e-07
ref|NP_179206.2| expressed protein [Arabidopsis thaliana] gi|291...    52  8e-06
gb|AAL57664.1| At2g16090/F7H1.11 [Arabidopsis thaliana] gi|20855...    52  8e-06

>pir||T04783 hypothetical protein F10M10.140 - Arabidopsis thaliana
           gi|4455182|emb|CAB36714.1| putative protein [Arabidopsis
           thaliana] gi|7270387|emb|CAB80154.1| putative protein
           [Arabidopsis thaliana]
          Length = 594

 Score = 60.1 bits (144), Expect = 3e-08
 Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 1/127 (0%)
 Frame = +3

Query: 276 EDYEEASDASYEYEEGSDDDACH-MDAAHGDAGPSSSAGPGWSVLNQDAIVKLQAEAVAD 452
           +DY  A + +  Y   SD D+   +D    +  P SS      V+ Q++++  Q E +  
Sbjct: 2   DDYFSAEEEACYYS--SDQDSLDGIDNEESELQPLSSKRSNTQVITQESLLAAQREDLLR 59

Query: 453 VVAILGVKSSVAKTVLMYFRWDKEALMSKVAERDPESVLKQAGVAITDAGSAGPNGQQGG 632
           V+ +L +K   A+T+L++++WD E L +   E+  +S+   AGV + D      +  Q  
Sbjct: 60  VMELLSIKEHHARTLLIHYQWDVEKLFAVFVEKGKDSLFSGAGVTVFDYQYGNSSFPQSS 119

Query: 633 PIMCRVC 653
            + C VC
Sbjct: 120 QMSCDVC 126

>ref|NP_567966.1| expressed protein [Arabidopsis thaliana] gi|15292861|gb|AAK92801.1|
           unknown protein [Arabidopsis thaliana]
           gi|21436339|gb|AAM51339.1| unknown protein [Arabidopsis
           thaliana] gi|29125018|emb|CAD52883.1| ARIADNE-like
           protein ARI1 [Arabidopsis thaliana]
          Length = 597

 Score = 60.1 bits (144), Expect = 3e-08
 Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 1/127 (0%)
 Frame = +3

Query: 276 EDYEEASDASYEYEEGSDDDACH-MDAAHGDAGPSSSAGPGWSVLNQDAIVKLQAEAVAD 452
           +DY  A + +  Y   SD D+   +D    +  P SS      V+ Q++++  Q E +  
Sbjct: 2   DDYFSAEEEACYYS--SDQDSLDGIDNEESELQPLSSKRSNTQVITQESLLAAQREDLLR 59

Query: 453 VVAILGVKSSVAKTVLMYFRWDKEALMSKVAERDPESVLKQAGVAITDAGSAGPNGQQGG 632
           V+ +L +K   A+T+L++++WD E L +   E+  +S+   AGV + D      +  Q  
Sbjct: 60  VMELLSIKEHHARTLLIHYQWDVEKLFAVFVEKGKDSLFSGAGVTVFDYQYGNSSFPQSS 119

Query: 633 PIMCRVC 653
            + C VC
Sbjct: 120 QMSCDVC 126

>ref|NP_189408.1| expressed protein [Arabidopsis thaliana] gi|9294476|dbj|BAB02695.1|
           RING zinc finger protein-like [Arabidopsis thaliana]
           gi|18176229|gb|AAL60007.1| unknown protein [Arabidopsis
           thaliana] gi|20465777|gb|AAM20377.1| unknown protein
           [Arabidopsis thaliana] gi|29125022|emb|CAD52885.1|
           ARIADNE-like protein ARI3 [Arabidopsis thaliana]
          Length = 537

 Score = 55.5 bits (132), Expect = 7e-07
 Identities = 31/112 (27%), Positives = 61/112 (53%)
 Frame = +3

Query: 255 EEFEDMSEDYEEASDASYEYEEGSDDDACHMDAAHGDAGPSSSAGPGWSVLNQDAIVKLQ 434
           +++  + +DY E  D +Y     S+DD  +   A  D  P +S      V+ ++++V  Q
Sbjct: 3   DDYMMLDDDYGEEEDENY-----SEDD--NYSEAEVDLQPVTSTKSTSQVIKKESLVAAQ 55

Query: 435 AEAVADVVAILGVKSSVAKTVLMYFRWDKEALMSKVAERDPESVLKQAGVAI 590
            E +  V+ +L VK + A+T+L+Y++W+ E L S  A++  + +   AG+ +
Sbjct: 56  KEILVRVMELLSVKENQARTLLIYYQWNVEKLFSVFADQGKDRMFSCAGLTV 107

>ref|NP_179206.2| expressed protein [Arabidopsis thaliana]
           gi|29125020|emb|CAD52884.1| ARIADNE-like protein ARI2
           [Arabidopsis thaliana]
          Length = 593

 Score = 52.0 bits (123), Expect = 8e-06
 Identities = 32/125 (25%), Positives = 63/125 (49%), Gaps = 2/125 (1%)
 Frame = +3

Query: 285 EEASDASYEYEEGSDDDACH-MDAAHGDAGPSSSAGPGWSVLNQDAIVKLQAEAVADVVA 461
           +  S    +Y   SD ++ + +D     + P SS      V+ +++++  Q E +  V+ 
Sbjct: 3   DNLSGEEEDYYYSSDQESLNGIDNDESVSIPVSSRSNTVKVITKESLLAAQREDLRRVME 62

Query: 462 ILGVKSSVAKTVLMYFRWDKEALMSKVAERDPESVLKQAGVAITDAGSAGPNGQQGGPIM 641
           +L VK   A+T+L+++RWD E L + + E+  +S+   AGV + +  S   +      +M
Sbjct: 63  LLSVKEHHARTLLIHYRWDVEKLFAVLVEKGKDSLFSGAGVTLLENQSCDSSVSGSSSMM 122

Query: 642 -CRVC 653
            C +C
Sbjct: 123 SCDIC 127

>gb|AAL57664.1| At2g16090/F7H1.11 [Arabidopsis thaliana] gi|20855959|gb|AAM26640.1|
           At2g16090/F7H1.11 [Arabidopsis thaliana]
          Length = 593

 Score = 52.0 bits (123), Expect = 8e-06
 Identities = 32/125 (25%), Positives = 63/125 (49%), Gaps = 2/125 (1%)
 Frame = +3

Query: 285 EEASDASYEYEEGSDDDACH-MDAAHGDAGPSSSAGPGWSVLNQDAIVKLQAEAVADVVA 461
           +  S    +Y   SD ++ + +D     + P SS      V+ +++++  Q E +  V+ 
Sbjct: 3   DNLSGEEEDYYYSSDQESLNGIDNDESVSIPVSSRSNTVKVITKESLLAAQREDLRRVME 62

Query: 462 ILGVKSSVAKTVLMYFRWDKEALMSKVAERDPESVLKQAGVAITDAGSAGPNGQQGGPIM 641
           +L VK   A+T+L+++RWD E L + + E+  +S+   AGV + +  S   +      +M
Sbjct: 63  LLSVKEHHARTLLIHYRWDVEKLFAVLVEKGKDSLFSGAGVTLLENQSCDSSVSGSSSMM 122

Query: 642 -CRVC 653
            C +C
Sbjct: 123 SCDIC 127



EST assemble image


clone accession position
1 LCL073a09_r AV630096 1 401
2 LCL035a03_r AV627989 41 523
3 LCL047b05_r AV628788 52 520
4 HCL077g06_r AV643884 157 653




Chlamydomonas reinhardtii
Kazusa DNA Research Institute