Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002647A_C01 KCC002647A_c01
(387 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_233556.2| similar to Ser/Arg-related nuclear matrix prote... 41 0.005
ref|NP_033096.1| ribonucleic acid binding protein S1 [Mus muscul... 41 0.005
ref|NP_058079.1| Ser/Arg-related nuclear matrix protein; plenty-... 40 0.006
dbj|BAA82149.2| ORF1 [TT virus] 40 0.006
dbj|BAA93581.1| ORF1 [TT virus] 39 0.014
>ref|XP_233556.2| similar to Ser/Arg-related nuclear matrix protein;
plenty-of-prolines-101; serine/arginine repetitive
matrix protein 1 [Rattus norvegicus]
Length = 958
Score = 40.8 bits (94), Expect = 0.005
Identities = 23/43 (53%), Positives = 24/43 (55%)
Frame = +1
Query: 247 TQPRAR*RRPLRPPRASRPASRRRRSPSPRPEPHPLPPA*CRR 375
T PR R R P PP +RRRRSPSP P P P PP RR
Sbjct: 589 TSPRRRRRSPSPPP------ARRRRSPSPAPPPPPPPPPRRRR 625
Score = 32.3 bits (72), Expect = 1.7
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +1
Query: 187 PRSQC-SPARTLCRAWPPRTWTQPRAR*RRPLRP--PRASRPASRRRRSPSPRPEPHPLP 357
PRS+ S +R+ R+ P + T+PR R R R PR RP+ RRR SP R P +P
Sbjct: 333 PRSRSRSKSRSRTRSRSP-SHTRPRRRHRSRSRSYSPRR-RPSPRRRPSPRRRTPPRRMP 390
Query: 358 P 360
P
Sbjct: 391 P 391
Score = 32.0 bits (71), Expect = 2.2
Identities = 19/42 (45%), Positives = 21/42 (49%), Gaps = 1/42 (2%)
Frame = +1
Query: 232 PPRTWTQPRAR*RRPLRPPRASRPASR-RRRSPSPRPEPHPL 354
PP P R R P PPR P+ RRRSPSPR P+
Sbjct: 613 PPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPI 654
>ref|NP_033096.1| ribonucleic acid binding protein S1 [Mus musculus]
gi|631763|pir||S43417 RNA/DNA-binding protein - mouse
gi|433437|emb|CAA49672.1| RNA/DNA-binding protein [Mus
musculus]
Length = 365
Score = 40.8 bits (94), Expect = 0.005
Identities = 23/59 (38%), Positives = 27/59 (44%)
Frame = +1
Query: 178 PEFPRSQCSPARTLCRAWPPRTWTQPRAR*RRPLRPPRASRPASRRRRSPSPRPEPHPL 354
P P + SP R + PP W + R RR R PR P RR RSP P P P+
Sbjct: 242 PRPPPRRFSPPRRMLP--PPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGPPPPQEPI 298
>ref|NP_058079.1| Ser/Arg-related nuclear matrix protein; plenty-of-prolines-101;
serine/arginine repetitive matrix protein 1 [Mus
musculus] gi|3153821|gb|AAC17422.1|
plenty-of-prolines-101; POP101; SH3-philo-protein [Mus
musculus]
Length = 897
Score = 40.4 bits (93), Expect = 0.006
Identities = 22/47 (46%), Positives = 26/47 (54%)
Frame = +1
Query: 238 RTWTQPRAR*RRPLRPPRASRPASRRRRSPSPRPEPHPLPPA*CRRQ 378
+ W P + R R P S P +RRRRSPSP P P P PP RR+
Sbjct: 546 KRWQSPVTKSSRRRRSP--SPPPARRRRSPSPAPPPPPPPPPPRRRR 590
Score = 33.5 bits (75), Expect = 0.74
Identities = 25/74 (33%), Positives = 32/74 (42%), Gaps = 13/74 (17%)
Frame = +1
Query: 178 PEFPRSQCSPARTLCRAWPP---------RTWTQPRAR*RR---PLRPPRASRPASRRRR 321
P + + SP + + W R+ + P AR RR P PP P RRRR
Sbjct: 531 PRKRQKETSPRMQMGKRWQSPVTKSSRRRRSPSPPPARRRRSPSPAPPPPPPPPPPRRRR 590
Query: 322 SPSPRPEPH-PLPP 360
SP+P P P PP
Sbjct: 591 SPTPPPRRRTPSPP 604
Score = 32.3 bits (72), Expect = 1.7
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +1
Query: 187 PRSQC-SPARTLCRAWPPRTWTQPRAR*RRPLRP--PRASRPASRRRRSPSPRPEPHPLP 357
PRS+ S +R+ R+ P + T+PR R R R PR RP+ RRR SP R P +P
Sbjct: 274 PRSRSRSKSRSRTRSRSP-SHTRPRRRHRSRSRSYSPRR-RPSPRRRPSPRRRTPPRRMP 331
Query: 358 P 360
P
Sbjct: 332 P 332
Score = 32.0 bits (71), Expect = 2.2
Identities = 19/42 (45%), Positives = 21/42 (49%), Gaps = 1/42 (2%)
Frame = +1
Query: 232 PPRTWTQPRAR*RRPLRPPRASRPASR-RRRSPSPRPEPHPL 354
PP P R R P PPR P+ RRRSPSPR P+
Sbjct: 578 PPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPI 619
>dbj|BAA82149.2| ORF1 [TT virus]
Length = 745
Score = 40.4 bits (93), Expect = 0.006
Identities = 25/54 (46%), Positives = 26/54 (47%)
Frame = +1
Query: 223 RAWPPRTWTQPRAR*RRPLRPPRASRPASRRRRSPSPRPEPHPLPPA*CRRQWR 384
R WP R W R R RRPLR RA RPA R RR + R RR WR
Sbjct: 10 RRWPARRWR--RRRRRRPLRRRRAGRPARRYRRRRTVRTRRRRWGRRRYRRGWR 61
>dbj|BAA93581.1| ORF1 [TT virus]
Length = 745
Score = 39.3 bits (90), Expect = 0.014
Identities = 24/54 (44%), Positives = 26/54 (47%)
Frame = +1
Query: 223 RAWPPRTWTQPRAR*RRPLRPPRASRPASRRRRSPSPRPEPHPLPPA*CRRQWR 384
R WP R W R R RRP+R RA RPA R RR + R RR WR
Sbjct: 10 RRWPARRWR--RRRRRRPVRRTRARRPARRYRRRRTVRTRRRRWGRRRYRRGWR 61
