KCC002639A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002639A_C01 KCC002639A_c01
ggctcaaggcgtcagatgtgttcagcttcggcaTGCTGCTGTGGCAGCTCGTCACAAGCG
AGCCCATCCCCTACGGCAAACTGACAGTGCCGCAGATCCTGTTGGGCGTATCCCAGGGCA
CGCTGACTCCCGAGTGGCCGGCTTCCACCCACCCGGCGCTGGTGCGACTGGGTCGCGCCT
GCCTGGCCCCCAGTCCGGAGAAGCGACCCTCGTTCGAGGCCATTGTGAAGGTGCTCACCA
AGATTGAGAAGCACGTGCGTGACGAGCTGAAGCAGCAGCGGCAGCGGCAGGCGGCAGCAG
AGCCGGCTTACGTGGGCACTCTGGCAAGCACGCCGGCCCAAACTGCGGCAGCGGCAGGCC
ACTAGCAGTAGCAGCAGCGGCGGCAGCGGCGGCGGCAGCGGCAGCAGCAGCAGCGGCAGC
AGCGGCAGCAGTAGCAGCAGTAGCTGCAGCGGCAGCACTAGCAGTGGTGGCAGCAACAGT
GACGTGGCCGCAAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002639A_C01 KCC002639A_c01
         (494 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_179361.1| protein kinase family [Arabidopsis thaliana] gi...    68  5e-11
dbj|BAC83504.1| putative serine/threonine protein kinase [Oryza ...    68  5e-11
ref|NP_195303.2| protein kinase family [Arabidopsis thaliana] gi...    68  7e-11
gb|AAP46399.1| mixed lineage kinase 2 [Xenopus laevis]                 67  9e-11
pir||T04683 hypothetical protein F8D20.290 - Arabidopsis thalian...    67  2e-10

>ref|NP_179361.1| protein kinase family [Arabidopsis thaliana]
           gi|25411811|pir||D84555 probable protein kinase
           [imported] - Arabidopsis thaliana
           gi|17979171|gb|AAL49781.1| putative protein kinase
           [Arabidopsis thaliana] gi|20465915|gb|AAM20110.1|
           putative protein kinase [Arabidopsis thaliana]
          Length = 546

 Score = 68.2 bits (165), Expect = 5e-11
 Identities = 36/82 (43%), Positives = 51/82 (61%)
 Frame = +3

Query: 12  SDVFSFGMLLWQLVTSEPIPYGKLTVPQILLGVSQGTLTPEWPASTHPALVRLGRACLAP 191
           +DVFS+ ++LW+L+T + IPY  LT  Q  +GV Q  L P+ P  THP +  L   C   
Sbjct: 462 ADVFSYAIVLWELLTGD-IPYAFLTPLQAAVGVVQKGLRPKIPKKTHPKVKGLLERCWHQ 520

Query: 192 SPEKRPSFEAIVKVLTKIEKHV 257
            PE+RP FE I+++L +I K V
Sbjct: 521 DPEQRPLFEEIIEMLQQIMKEV 542

>dbj|BAC83504.1| putative serine/threonine protein kinase [Oryza sativa (japonica
           cultivar-group)]
          Length = 438

 Score = 68.2 bits (165), Expect = 5e-11
 Identities = 36/90 (40%), Positives = 53/90 (58%)
 Frame = +3

Query: 12  SDVFSFGMLLWQLVTSEPIPYGKLTVPQILLGVSQGTLTPEWPASTHPALVRLGRACLAP 191
           +DVFSFG+++W+L+T + +PY  +T  Q  + V Q  L P  PA THP L  L + C   
Sbjct: 337 ADVFSFGIVIWELLTGK-LPYEDMTPLQAAVAVVQKDLRPIIPADTHPMLAGLLQKCWQK 395

Query: 192 SPEKRPSFEAIVKVLTKIEKHVRDELKQQR 281
            P  RP+F  I+ +L  I++ VR    Q+R
Sbjct: 396 DPALRPTFSEILDILNSIKEAVRSSGHQKR 425

>ref|NP_195303.2| protein kinase family [Arabidopsis thaliana]
           gi|20260236|gb|AAM13016.1| putative protein [Arabidopsis
           thaliana] gi|22136520|gb|AAM91338.1| putative protein
           [Arabidopsis thaliana]
          Length = 570

 Score = 67.8 bits (164), Expect = 7e-11
 Identities = 34/85 (40%), Positives = 51/85 (60%)
 Frame = +3

Query: 12  SDVFSFGMLLWQLVTSEPIPYGKLTVPQILLGVSQGTLTPEWPASTHPALVRLGRACLAP 191
           +DVFS+ ++LW+L+T E +PY  LT  Q  +GV Q  L P+ P  THP L  L   C   
Sbjct: 468 ADVFSYAIVLWELLTGE-LPYSYLTPLQAAVGVVQKGLRPKIPKETHPKLTELLEKCWQQ 526

Query: 192 SPEKRPSFEAIVKVLTKIEKHVRDE 266
            P  RP+F  I+++L ++ + V D+
Sbjct: 527 DPALRPNFAEIIEMLNQLIREVGDD 551

>gb|AAP46399.1| mixed lineage kinase 2 [Xenopus laevis]
          Length = 1005

 Score = 67.4 bits (163), Expect = 9e-11
 Identities = 34/82 (41%), Positives = 51/82 (61%)
 Frame = +3

Query: 6   KASDVFSFGMLLWQLVTSEPIPYGKLTVPQILLGVSQGTLTPEWPASTHPALVRLGRACL 185
           K+SDV+SFG+LLW+L+T E +PY ++    +  GV+   LT   P++     VR+  AC 
Sbjct: 302 KSSDVWSFGVLLWELLTGE-VPYREIDALAVAYGVAMNKLTLPIPSTCPEPFVRILEACW 360

Query: 186 APSPEKRPSFEAIVKVLTKIEK 251
            P P  RP+F  I++ LT IE+
Sbjct: 361 DPDPHSRPTFSCILEQLTTIEQ 382

>pir||T04683 hypothetical protein F8D20.290 - Arabidopsis thaliana
           gi|3367596|emb|CAA20048.1| putative protein [Arabidopsis
           thaliana] gi|7270530|emb|CAB81487.1| putative protein
           [Arabidopsis thaliana]
          Length = 553

 Score = 66.6 bits (161), Expect = 2e-10
 Identities = 34/84 (40%), Positives = 50/84 (59%)
 Frame = +3

Query: 12  SDVFSFGMLLWQLVTSEPIPYGKLTVPQILLGVSQGTLTPEWPASTHPALVRLGRACLAP 191
           +DVFS+ ++LW+L+T E +PY  LT  Q  +GV Q  L P+ P  THP L  L   C   
Sbjct: 451 ADVFSYAIVLWELLTGE-LPYSYLTPLQAAVGVVQKGLRPKIPKETHPKLTELLEKCWQQ 509

Query: 192 SPEKRPSFEAIVKVLTKIEKHVRD 263
            P  RP+F  I+++L ++ + V D
Sbjct: 510 DPALRPNFAEIIEMLNQLIREVID 533



EST assemble image


clone accession position
1 LCL049g02_r AV628968 1 284
2 HCL074b01_r AV643683 34 491
3 MXL065d01_r BP096815 120 499
4 LCL040c07_r AV628337 182 489




Chlamydomonas reinhardtii
Kazusa DNA Research Institute