KCC002634A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002634A_C01 KCC002634A_c01
CTCTCTAAACTCCATCCGAGCAGAGTAGTAAATTGCTGCACTCAAGACGCACATCAAATT
CAACAGTAAACGTCACAACGCTGCTGACGGAGACTTACACAACAGGCACACCTTGCCAAC
ACTCGCAGAATGCTTTGCATCTTCTTTAAAACTGCGGTGCAATAGAGCAGATGTTCTGCG
GGACAAATGTACCTATAATAGCGTGACTGCGAGGAAAGGTGTATACCAATTACCAGCCAG
GATCGCGCCAAGCGCGCTTCTGTCACGCGATTTAGAATCCATGGGGACCAGTCGCAACGC
AAGGGGGTCCCTTGGTTTTCGTGGTGGTGTTGCATGTTTCTTGATCGTCGCATCGTGTCT
TGCGTCGCTAAGCGCGGTCCAGGGTGCGGCACAGAGCCCTTTCAAAGAGGAGATAAAGAC
CTGCCATCCGGACTGCACAAAGTTTGGGAACTGCAACGGCGAGACGGGACAGTGTGACTG
CCCGTTCGGGCTCACAGGCCCGTCCTGCCAGGAGCGGCTGTTCCCGGCCTGCCACTCCAG
CAAAGACGAGGGCACAGTGCCGCACTACGGCACCTGGTACCCCAAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002634A_C01 KCC002634A_c01
         (586 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAF72881.1|AAF72881 membrane attractin precursor [Homo sapiens]     48  1e-04
ref|NP_647537.1| attractin isoform 1; attractin-2; mahogany prot...    48  1e-04
ref|NP_647538.1| attractin isoform 2; attractin-2; mahogany prot...    48  1e-04
gb|AAD03057.1| attractin-2 [Homo sapiens]                              48  1e-04
gb|AAF72882.1|AAF72882 secreted attractin precursor [Homo sapiens]     48  1e-04

>gb|AAF72881.1|AAF72881 membrane attractin precursor [Homo sapiens]
          Length = 1429

 Score = 47.8 bits (112), Expect = 1e-04
 Identities = 22/57 (38%), Positives = 25/57 (43%)
 Frame = +2

Query: 341 LIVASCLASLSAVQGAAQSPFKEEIKTCHPDCTKFGNCNGETGQCDCPFGLTGPSCQ 511
           L++  C A  +A   A       E K C   C   G CN  TGQC CP G  G  CQ
Sbjct: 74  LLLLPCEAEAAAAAAAVSGSAAAEAKECDRPCVNGGRCNPGTGQCVCPAGWVGEQCQ 130

>ref|NP_647537.1| attractin isoform 1; attractin-2; mahogany protein [Homo sapiens]
           gi|13431311|sp|O75882|ATRN_HUMAN Attractin precursor
           (Mahogany homolog) (DPPT-L)
          Length = 1429

 Score = 47.8 bits (112), Expect = 1e-04
 Identities = 22/57 (38%), Positives = 25/57 (43%)
 Frame = +2

Query: 341 LIVASCLASLSAVQGAAQSPFKEEIKTCHPDCTKFGNCNGETGQCDCPFGLTGPSCQ 511
           L++  C A  +A   A       E K C   C   G CN  TGQC CP G  G  CQ
Sbjct: 74  LLLLPCEAEAAAAAAAVSGSAAAEAKECDRPCVNGGRCNPGTGQCVCPAGWVGEQCQ 130

>ref|NP_647538.1| attractin isoform 2; attractin-2; mahogany protein [Homo sapiens]
          Length = 1272

 Score = 47.8 bits (112), Expect = 1e-04
 Identities = 22/57 (38%), Positives = 25/57 (43%)
 Frame = +2

Query: 341 LIVASCLASLSAVQGAAQSPFKEEIKTCHPDCTKFGNCNGETGQCDCPFGLTGPSCQ 511
           L++  C A  +A   A       E K C   C   G CN  TGQC CP G  G  CQ
Sbjct: 74  LLLLPCEAEAAAAAAAVSGSAAAEAKECDRPCVNGGRCNPGTGQCVCPAGWVGEQCQ 130

>gb|AAD03057.1| attractin-2 [Homo sapiens]
          Length = 1272

 Score = 47.8 bits (112), Expect = 1e-04
 Identities = 22/57 (38%), Positives = 25/57 (43%)
 Frame = +2

Query: 341 LIVASCLASLSAVQGAAQSPFKEEIKTCHPDCTKFGNCNGETGQCDCPFGLTGPSCQ 511
           L++  C A  +A   A       E K C   C   G CN  TGQC CP G  G  CQ
Sbjct: 74  LLLLPCEAEAAAAAAAVSGSAAAEAKECDRPCVNGGRCNPGTGQCVCPAGWVGEQCQ 130

>gb|AAF72882.1|AAF72882 secreted attractin precursor [Homo sapiens]
          Length = 1272

 Score = 47.8 bits (112), Expect = 1e-04
 Identities = 22/57 (38%), Positives = 25/57 (43%)
 Frame = +2

Query: 341 LIVASCLASLSAVQGAAQSPFKEEIKTCHPDCTKFGNCNGETGQCDCPFGLTGPSCQ 511
           L++  C A  +A   A       E K C   C   G CN  TGQC CP G  G  CQ
Sbjct: 74  LLLLPCEAEAAAAAAAVSGSAAAEAKECDRPCVNGGRCNPGTGQCVCPAGWVGEQCQ 130



EST assemble image


clone accession position
1 LCL078e11_r AV630417 1 235
2 LCL008a02_r AV626370 1 465
3 LCL059g11_r AV629498 28 408
4 HCL072d09_r AV643595 64 586




Chlamydomonas reinhardtii
Kazusa DNA Research Institute