KCC002631A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002631A_C01 KCC002631A_c01
ctagataagttgaagatgacgtgaCGTGAGTCACCATTTGCGAACTAGCTATCCTTGCTT
TTGGCGGGATTTCCTCACGACACCAATTCGCAAGCCTGAGTCGCGTAGCTTGATATGGAG
ATCAGCATTCATCCCCGAAAAGTCCTTAGATGATCTGCGTCACTTCCCAGCAGGCGCAGC
GTCACCGGCTTGAGCGCAGGCGCACAGAGTATGGCACACCCGCACCATCACCCCGCCTCC
AAGGCGGGCTCCGGCTTCACCCTCAGAAGCCGGTGGATTGCCTTCGCGCTATACGCAGTC
CTCAGCATTGCGCTGACGATTGTACTTTTTGTTGACCCGCTCATTGACCGGCCCTCGGGG
CTCGTTAAGCTCGCCTGGTTCACCAAGGCGCCGCTGAGCCACGGCCTCGACCCGTGCTCG
TGGGATTATGAAGGCTCCTGGCGCATCGGCTTTGCTCGCGGCAACCCCGACCCGCAGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002631A_C01 KCC002631A_c01
         (479 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_862197.1| hypothetical protein [Streptomyces violaceorube...    36  0.21
ref|ZP_00058929.1| COG0474: Cation transport ATPase [Thermobifid...    35  0.46
ref|XP_311646.1| ENSANGP00000014996 [Anopheles gambiae] gi|21295...    35  0.60
ref|ZP_00092341.1| COG0614: ABC-type Fe3+-hydroxamate transport ...    35  0.60
gb|AAL77129.1|AC098566_16 Putative polyprotein [Oryza sativa] gi...    33  1.7

>ref|NP_862197.1| hypothetical protein [Streptomyces violaceoruber]
           gi|28797341|gb|AAO50188.1| hypothetical protein
           [Streptomyces violaceoruber]
          Length = 172

 Score = 36.2 bits (82), Expect = 0.21
 Identities = 32/95 (33%), Positives = 43/95 (44%), Gaps = 9/95 (9%)
 Frame = +2

Query: 41  RTSYPCFWRDFLTTPIRKPESRSLIWRSAFIPEKSLDDLR---HFPAGAASPA*AQAHRV 211
           RT +PC      TT IR P  +    + AF P +S   LR   H PA + +PA       
Sbjct: 45  RTPWPCTSG---TTAIRPPARK----QPAFSPCRSSSTLRCSPHSPAWSPAPASTS---- 93

Query: 212 WHTRTITPPPRRAP------ASPSEAGGLPSRYTQ 298
           W +R  +PPP   P      +SP+ A   PS  T+
Sbjct: 94  WRSRPGSPPPNPKPPARSPRSSPAPARSTPSAITE 128

>ref|ZP_00058929.1| COG0474: Cation transport ATPase [Thermobifida fusca]
          Length = 911

 Score = 35.0 bits (79), Expect = 0.46
 Identities = 18/42 (42%), Positives = 24/42 (56%)
 Frame = -1

Query: 398 LSGALVNQASLTSPEGRSMSGSTKSTIVSAMLRTAYSAKAIH 273
           L GAL N+A++ S EGR  SG        A+L  AY A+ +H
Sbjct: 389 LCGALTNEATMASEEGREASGDPTEV---ALLEAAYDAELLH 427

>ref|XP_311646.1| ENSANGP00000014996 [Anopheles gambiae] gi|21295222|gb|EAA07367.1|
           ENSANGP00000014996 [Anopheles gambiae str. PEST]
          Length = 615

 Score = 34.7 bits (78), Expect = 0.60
 Identities = 29/109 (26%), Positives = 44/109 (39%), Gaps = 2/109 (1%)
 Frame = +2

Query: 131 IPEKSLDDLRHFPAGAASPA*AQAHRVWHTRTITPPPRRAPASPSEAGGLPSRYTQSSAL 310
           +P+K +  L  FP         Q  +  +   I PP      +    GG+P  Y +SS L
Sbjct: 325 VPDKQIQPLPRFPE--------QPEKTLNLSHIVPPSPLPSHNGFPDGGIPGLYDRSSTL 376

Query: 311 R*RL--YFLLTRSLTGPRGSLSSPGSPRRR*ATASTRARGIMKAPGASA 451
             R     L +   +G RG+++S     R  A  + R     + PG SA
Sbjct: 377 DSRATGLSLDSNGTSGTRGAVNSNDEEHRLIARYAARLAQESRTPGGSA 425

>ref|ZP_00092341.1| COG0614: ABC-type Fe3+-hydroxamate transport system, periplasmic
           component [Azotobacter vinelandii]
          Length = 1063

 Score = 34.7 bits (78), Expect = 0.60
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +3

Query: 177 QRHRLERRRTEYGTPAPSPRLQGGLRLHPQKPVDCLRAIRSPQ 305
           Q  RL R R  +G P P PR   GL+  P +P    R +R  Q
Sbjct: 640 QELRLHRGRLHHGQPEPQPRTGQGLQRRPVRPEPARRRVRHQQ 682

>gb|AAL77129.1|AC098566_16 Putative polyprotein [Oryza sativa] gi|31430511|gb|AAP52413.1|
            putative polyprotein [Oryza sativa (japonica
            cultivar-group)]
          Length = 1264

 Score = 33.1 bits (74), Expect = 1.7
 Identities = 43/154 (27%), Positives = 56/154 (35%), Gaps = 7/154 (4%)
 Frame = +2

Query: 35   HLRTSYP-CFWRDFLTTPIRKPESRSLIWRSAFIPEKSLDDLRHFPAGAASPA*AQAHRV 211
            H+R S P  + R   T P   P SR    RS              PA   +PA   A   
Sbjct: 697  HMRMSCPHTYPRTDFTAPSLTPISRPHSGRSG-------------PAARVAPAGPTAEVA 743

Query: 212  WHTRTITPPPRRAPASPSEAGGLPSRYTQSSALR*RLYFLLTRSLTGPRGSLSSPGSP-- 385
              T   TPP   AP S + AG  P+    S+ L              P    +SPG P  
Sbjct: 744  RSTEPPTPPVGSAPVSSAPAG--PASTAPSAEL--------------PAHESASPGPPST 787

Query: 386  ----RRR*ATASTRARGIMKAPGASALLAATPTR 475
                RR  A+ S+ +  + + PG      A P+R
Sbjct: 788  GSAARRPPASPSSTSSMLWRPPGPPPGFPALPSR 821



EST assemble image


clone accession position
1 HCL072b02_r AV643574 1 479
2 LCL098a09_r AV631676 25 372




Chlamydomonas reinhardtii
Kazusa DNA Research Institute