KCC002627A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002627A_C01 KCC002627A_c01
CAAAGTGTGTACGTTACAGAGCATGCGGTGCTGCAGGTGCGCATGGAGGTGGAGGTGGGG
GGCTGTGGACCAAACGTCCCCCGCCGGTCACCCGCACCCCTAGTCCCCGCACGCCACCCT
AGCGCCGGCGATGGCCATCCTTGCCCTTCCAGCCTTCCTTGCCGCCTGCATTGGCGCTAA
CTTGAAGCGCCTTGCTGACCGCCGCTGCTTGTCGCTGCTGCTCCCCGATGCTGCTGTCAA
CACCGCAACAATACGACCTGTGCATATGGCACAAGGGGCACAGCTACTGCCCGGCACGGC
TGTAGTCTCCTGGCGCACACCTACGGGTACATCCCACGGGTACATCCCCTATTTCACGTG
GACAGCAACGCGCGTGCTGCGTATGTGTCATGAACCCATGCGTACCCACCAACCGCCCCG
CTGCTCGCTTGCACATGTACCACGTCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002627A_C01 KCC002627A_c01
         (447 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_788552.1| knirps-like CG4761-PA [Drosophila melanogaster]...    41  0.003
ref|NP_044109.1| MC158R [Molluscum contagiosum virus] gi|7515157...    32  0.044
dbj|BAB85218.1| matrix metalloproteinase [Volvox carteri f. naga...    37  0.061
dbj|BAA78762.1| Similar to Zea mays PRP gene.(X60432) [Oryza sat...    37  0.080
emb|CAD13232.1| polyprotein [Sugarcane mosaic virus] gi|17384392...    36  0.10

>ref|NP_788552.1| knirps-like CG4761-PA [Drosophila melanogaster]
           gi|125519|sp|P13054|KNRL_DROME Knirps-related protein
           gi|103406|pir||S06450 steroid hormone receptor homolog -
           fruit fly (Drosophila melanogaster)
           gi|8156|emb|CAA32365.1| unnamed protein product
           [Drosophila melanogaster] gi|18447289|gb|AAL68221.1|
           LD23140p [Drosophila melanogaster]
           gi|23094177|gb|AAF51627.2| CG4761-PA [Drosophila
           melanogaster] gi|226215|prf||1501350A knirps related
           gene
          Length = 647

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 41/122 (33%), Positives = 52/122 (42%), Gaps = 8/122 (6%)
 Frame = +3

Query: 27  GAAGAH----GGGGGGLWTKRPPPVTRTPSPRTPP*RRRWPSLPFQPSLPPALALT*SAL 194
           GA G+H    GGGGGG+   RPP + +  SP  P     +P L   P +PP   L  S L
Sbjct: 243 GADGSHSGGGGGGGGGVTPGRPPQMRKDLSPFLP---LPFPGLASMPVMPPPAFLPPSHL 299

Query: 195 L----TAAACRCCSPMLLSTPQQYDLCIWHKGHSYCPARL*SPGAHLRVHPTGTSPISRG 362
           L      A       +L  TP+Q    +      +      S GA  R  P GTSP +  
Sbjct: 300 LFPGYHPALYSHHQGLLKPTPEQQQAAVAAAAVQHL---FNSSGAGQRFAP-GTSPFANH 355

Query: 363 QQ 368
           QQ
Sbjct: 356 QQ 357

>ref|NP_044109.1| MC158R [Molluscum contagiosum virus] gi|7515157|pir||T30760
           hypothetical protein 158R - Molluscum contagiosum virus
           1 gi|1492101|gb|AAC55286.1| MC158R [Molluscum
           contagiosum virus subtype 1]
          Length = 182

 Score = 32.0 bits (71), Expect(2) = 0.044
 Identities = 21/57 (36%), Positives = 28/57 (48%), Gaps = 3/57 (5%)
 Frame = -3

Query: 202 AVSKALQVSANAGGKEGWKGKDG---HRRR*GGVRGLGVRVTGGGRLVHSPPPPPPC 41
           A+  AL   A AGG+   +GK+    HR+      G G RV+ G     +PP  PPC
Sbjct: 15  AILFALLALAGAGGRNSKEGKNDCYMHRQH-----GPGPRVSAGPCTSSNPPAAPPC 66

 Score = 24.6 bits (52), Expect(2) = 0.044
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 61  PPPPPPCAPAAPHA 20
           PPPPPP  P  P A
Sbjct: 102 PPPPPPPPPPLPGA 115

>dbj|BAB85218.1| matrix metalloproteinase [Volvox carteri f. nagariensis]
          Length = 625

 Score = 37.0 bits (84), Expect = 0.061
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +3

Query: 78  PPPVTRTPSPRTPP*RRRWPSLPFQPSLPP 167
           PPP+++ PSPR PP  R  P  P  P  PP
Sbjct: 541 PPPISKPPSPRPPPRPRSPPRSPLPPPRPP 570

>dbj|BAA78762.1| Similar to Zea mays PRP gene.(X60432) [Oryza sativa (japonica
           cultivar-group)]
          Length = 333

 Score = 36.6 bits (83), Expect = 0.080
 Identities = 24/58 (41%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
 Frame = +3

Query: 27  GAAGAHGGGGGGLWTK--------RPPPVTRTPS---PRTPP*RRRWPSLPFQPSLPP 167
           G     G GGGG   K        +PPP  R PS   P TPP  R  P+ P+ PS PP
Sbjct: 128 GKPPGSGSGGGGHHGKPPEHHHHHKPPPSPRCPSCHPPYTPPTPRPPPTPPYVPSPPP 185

>emb|CAD13232.1| polyprotein [Sugarcane mosaic virus] gi|17384392|emb|CAD13233.1|
           polyprotein [Sugarcane mosaic virus]
          Length = 362

 Score = 36.2 bits (82), Expect = 0.10
 Identities = 18/37 (48%), Positives = 20/37 (53%)
 Frame = -2

Query: 161 QGRLEGQGWPSPALGWRAGTRGAGDRRGTFGPQPPTS 51
           QG   G G P+PA G  +GTR      GT G  PPTS
Sbjct: 75  QGGSSGSGTPAPAAGGGSGTRTPSTGSGTQGSTPPTS 111



EST assemble image


clone accession position
1 HCL071d06_r AV643542 1 439
2 HCL085h03_r AV644301 1 447
3 HCL098h07_r AV645155 10 298




Chlamydomonas reinhardtii
Kazusa DNA Research Institute