KCC002620A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002620A_C01 KCC002620A_c01
tactgcaggCAATCGCTCCTTTGCTTGCACTTGAATACTCCGACGTGCAGACTGGTCTAG
CAAGTCAACAACAATGCGAGTAATGCAAGGCAACCGACGTCATATGGCTAGCGGGCTTCG
CTCAGAGAAGTCGCTGGCCTGCGTGCAAGCGGTTCCCGTTAGAGGCTCAGCGAGGTCTCT
GAAGGCCGCAGCGCGCGCTACCCGGCAAGAGCGTCGCTTTGCTCGGCGCAGTGCGTTCGT
GCCCCAGGCGAGCGCAGCGCTGGTGACGAAGGAGCATGGGCCCGCGCCGGTTCAGCCGCC
CTCGGCTCCCGTCAACGTGGAGGCTCAGGTGTCCTCGGTGGCGCCCAACATCAAGGTGAT
CCAGTCCATCTGCCGCAGCGACCGCCTCAAGTACGAGGTGGAGTACGGCATGCGGCGCGG
CACCACAGACAATTCCTACCTGGTCACGGCGCCGGGTGCGGTGACGCTGGTGGACGTGCC
TTATGAGGCGTACGCGGAGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002620A_C01 KCC002620A_c01
         (500 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_440048.1| potential FMN-protein [Synechocystis sp. PCC 68...    56  2e-07
ref|NP_682163.1| ORF_ID:tll1373~probable flavoprotein [Thermosyn...    54  8e-07
ref|NP_441789.1| hypothetical protein [Synechocystis sp. PCC 680...    50  2e-05
ref|ZP_00111401.1| COG0426: Uncharacterized flavoproteins [Nosto...    47  2e-04
ref|ZP_00105849.1| COG0426: Uncharacterized flavoproteins [Nosto...    46  3e-04

>ref|NP_440048.1| potential FMN-protein [Synechocystis sp. PCC 6803]
           gi|21362454|sp|P72721|DFA4_SYNY3 Putative diflavin
           flavoprotein A 4 gi|7448600|pir||S74576 probable
           flavoprotein, 65.6K - Synechocystis sp. (strain PCC
           6803) gi|1651801|dbj|BAA16728.1| potential FMN-protein
           [Synechocystis sp. PCC 6803]
          Length = 594

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 30/60 (50%), Positives = 41/60 (68%)
 Frame = +2

Query: 320 EAQVSSVAPNIKVIQSICRSDRLKYEVEYGMRRGTTDNSYLVTAPGAVTLVDVPYEAYAE 499
           + QV+ +AP  KV++S    DRLK+EVEYG RRGTT NSYL+ A     L+D P E++ +
Sbjct: 27  DIQVAEIAPQTKVLRSRLW-DRLKFEVEYGRRRGTTSNSYLIQA-DHTALIDPPGESFCD 84

>ref|NP_682163.1| ORF_ID:tll1373~probable flavoprotein [Thermosynechococcus elongatus
           BP-1] gi|29336656|sp|Q8DJ55|DFA2_SYNEL Putative diflavin
           flavoprotein A 2 gi|22295097|dbj|BAC08925.1|
           ORF_ID:tll1373~probable flavoprotein
           [Thermosynechococcus elongatus BP-1]
          Length = 578

 Score = 54.3 bits (129), Expect = 8e-07
 Identities = 28/60 (46%), Positives = 42/60 (69%)
 Frame = +2

Query: 320 EAQVSSVAPNIKVIQSICRSDRLKYEVEYGMRRGTTDNSYLVTAPGAVTLVDVPYEAYAE 499
           + QV+ +AP + V++S    DRLK+EVEYG ++GTT NSYL+ AP    L+D P E++ +
Sbjct: 9   DVQVAEIAPGVLVLRSRTW-DRLKFEVEYGRQQGTTSNSYLIQAP-QPALLDPPGESFTQ 66

>ref|NP_441789.1| hypothetical protein [Synechocystis sp. PCC 6803]
           gi|21362456|sp|P74373|DFA3_SYNY3 Putative diflavin
           flavoprotein A 3 gi|7448601|pir||S76209 probable
           flavoprotein, 65K - Synechocystis sp. (strain PCC 6803)
           gi|1653555|dbj|BAA18468.1| ORF_ID:sll1521~hypothetical
           protein [Synechocystis sp. PCC 6803]
          Length = 597

 Score = 49.7 bits (117), Expect = 2e-05
 Identities = 28/67 (41%), Positives = 44/67 (64%), Gaps = 3/67 (4%)
 Frame = +2

Query: 308 PVNVEAQVSSVAPNIKVIQSICRS---DRLKYEVEYGMRRGTTDNSYLVTAPGAVTLVDV 478
           P+ + A+   + P I V  ++ RS   DRLK+E+EYG++RGTT NSYL++A   + L D 
Sbjct: 22  PLTMPAKDVQICP-IAVDTTVFRSRTWDRLKFEIEYGLQRGTTANSYLISA-DKIALFDP 79

Query: 479 PYEAYAE 499
           P E++ +
Sbjct: 80  PGESFTD 86

>ref|ZP_00111401.1| COG0426: Uncharacterized flavoproteins [Nostoc punctiforme]
          Length = 570

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 25/60 (41%), Positives = 37/60 (61%)
 Frame = +2

Query: 320 EAQVSSVAPNIKVIQSICRSDRLKYEVEYGMRRGTTDNSYLVTAPGAVTLVDVPYEAYAE 499
           + QV  +A N K I++   S RL++E+EY + RGTT N YL+ A     L+D P E++ E
Sbjct: 8   DVQVLPIATNTKAIRARSWS-RLRFEIEYALERGTTSNCYLIEA-DKTALIDPPPESFTE 65

>ref|ZP_00105849.1| COG0426: Uncharacterized flavoproteins [Nostoc punctiforme]
          Length = 589

 Score = 45.8 bits (107), Expect = 3e-04
 Identities = 25/60 (41%), Positives = 37/60 (61%)
 Frame = +2

Query: 320 EAQVSSVAPNIKVIQSICRSDRLKYEVEYGMRRGTTDNSYLVTAPGAVTLVDVPYEAYAE 499
           + QV+ +  N  +++S    DRLK+EVEY  +RGTT NSYL+       L+D P E++ E
Sbjct: 24  DVQVAEIGKNTLILRSRTW-DRLKFEVEYSRQRGTTANSYLIQGE-KKALIDPPGESFTE 81



EST assemble image


clone accession position
1 HCL070e06_r AV643489 1 454
2 LCL091h12_r AV631319 10 211
3 LCL018c06_r AV626930 13 500




Chlamydomonas reinhardtii
Kazusa DNA Research Institute