KCC002619A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002619A_C01 KCC002619A_c01
gcggagcccattgatCCCAAAGATGACTCAACCACAAGTAATACACGTACCACGCTCTCG
GCAGGCCATCAAGCAACAGTCTGCTAGCCTTATTGCAACACTCCTCGTCCTCGTTGGTGT
CGCTGTCGCGTTATTGCCTCTAGGGCCGTCCAACGCGCCCCTAGGGCAGCAATTCGTGAC
GGGTGCGATGAGGTTGGCATTTAAGACCGCTGTTCCGGCACAAAGGGGCTCGCATGTCTC
GCGGCCCTCAACTTTAGCGTTTCCGGGGCCACGCCTAGCTGCAGCAGCGCCTGTGCAGTC
GGCAGCTGCGCCATCATGCTCCAGCTCTGGAGACACCTGCAGCCTAGGCGGGGGGGCCAG
CTCCTTCGCTGGGAGTCTGGCACCATCCGGACAGGCGACGAAACGACGCGCGACCCCGCT
CGCCGCAGCACCAGAGTCAGCGGTCAAGACTACTGGTGCCGTAGACAAGCACTGGTGGAA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002619A_C01 KCC002619A_c01
         (480 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_739264.1| hypothetical protein [Corynebacterium efficiens...    45  3e-04
ref|NP_573340.1| CG7349-PA [Drosophila melanogaster] gi|22832534...    45  4e-04
gb|AAL90301.1| RE03249p [Drosophila melanogaster]                      45  4e-04
ref|ZP_00133185.1| COG5295: Autotransporter adhesin [Haemophilus...    40  0.011
pir||T46707 proteophosphoglycan, membrane-associated [imported] ...    39  0.024

>ref|NP_739264.1| hypothetical protein [Corynebacterium efficiens YS-314]
           gi|23494498|dbj|BAC19464.1| hypothetical protein
           [Corynebacterium efficiens YS-314]
          Length = 609

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 37/99 (37%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
 Frame = +2

Query: 182 GAMRLAFKTAVPAQRGSHVSRPSTLAFPGPRLAAAAPVQSAAAPSCSSSGDTCSLGGGAS 361
           GA   A   A P+  G+ +  P   A P P  A  AP   AAAP  +  G      GGA 
Sbjct: 137 GAAVPAPGVATPSAPGASIPTPGA-AMPTPGTATPAP--GAAAPGATIPGSAVPAPGGAP 193

Query: 362 SFAGSLAPSGQATKR-----RATPLAAAPESAVKTTGAV 463
           +  G+ A  G A  R      A P A AP SAV T GA+
Sbjct: 194 AAPGAPAAPGAAAPRTPAPGAAIPGAVAPGSAVPTPGAI 232

>ref|NP_573340.1| CG7349-PA [Drosophila melanogaster] gi|22832534|gb|AAF48905.2|
           CG7349-PA [Drosophila melanogaster]
          Length = 437

 Score = 45.1 bits (105), Expect = 4e-04
 Identities = 40/99 (40%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
 Frame = +2

Query: 200 FKTAVPAQR--GSHVSRP----STLAFPGPRLAAAAPVQSAA-APSCSSS-----GDTCS 343
           F+  V A R     VSRP    STL+ PGP LAAA PV + +  P C+ S     G    
Sbjct: 19  FRNYVLANRDVSEPVSRPAAPMSTLSIPGPALAAATPVSAVSLVPRCTHSSLQGGGQGAG 78

Query: 344 LGGGASSFAGSLAPSGQATKRRATPLAAAPESAVKTTGA 460
             G   S  G  A  G ATKR+ +   AAP  A K  GA
Sbjct: 79  GRGLRGSATGGSAAGGIATKRQYSG-GAAPAGAAKPGGA 116

>gb|AAL90301.1| RE03249p [Drosophila melanogaster]
          Length = 437

 Score = 45.1 bits (105), Expect = 4e-04
 Identities = 40/99 (40%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
 Frame = +2

Query: 200 FKTAVPAQR--GSHVSRP----STLAFPGPRLAAAAPVQSAA-APSCSSS-----GDTCS 343
           F+  V A R     VSRP    STL+ PGP LAAA PV + +  P C+ S     G    
Sbjct: 19  FRNYVLANRDVSEPVSRPAAPMSTLSIPGPALAAATPVSAVSLVPRCTHSSLQGGGQGAG 78

Query: 344 LGGGASSFAGSLAPSGQATKRRATPLAAAPESAVKTTGA 460
             G   S  G  A  G ATKR+ +   AAP  A K  GA
Sbjct: 79  GRGLRGSATGGSAAGGIATKRQYSG-GAAPAGAAKPGGA 116

>ref|ZP_00133185.1| COG5295: Autotransporter adhesin [Haemophilus somnus 2336]
          Length = 891

 Score = 40.4 bits (93), Expect = 0.011
 Identities = 38/92 (41%), Positives = 46/92 (49%), Gaps = 2/92 (2%)
 Frame = +2

Query: 194 LAFKTAVPAQRGSHVSRPSTLAFPGPRLAAAAPVQSAAAPSCSSSGDTCSLGGGASSFA- 370
           LA     P+  GS  + PS  A P P  AA A V S+AAPS SSSG   S GGG++S A 
Sbjct: 129 LAKNGTTPSSTGS--TSPSASA-PAPTPAAPASV-SSAAPS-SSSGGAGSNGGGSNSMAS 183

Query: 371 -GSLAPSGQATKRRATPLAAAPESAVKTTGAV 463
            G    +G AT    +     P +   TT AV
Sbjct: 184 SGGSNGAGMATTTPTSAPTTTPTTTTPTTTAV 215

>pir||T46707 proteophosphoglycan, membrane-associated [imported] - Leishmania
           major (fragment) gi|5420389|emb|CAB46680.1|
           proteophosphoglycan [Leishmania major]
          Length = 383

 Score = 39.3 bits (90), Expect = 0.024
 Identities = 25/81 (30%), Positives = 39/81 (47%)
 Frame = +2

Query: 218 AQRGSHVSRPSTLAFPGPRLAAAAPVQSAAAPSCSSSGDTCSLGGGASSFAGSLAPSGQA 397
           A   S  S PS+ +      +++AP  S++APS SSS    S    A S + S APS  +
Sbjct: 10  APSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSS 69

Query: 398 TKRRATPLAAAPESAVKTTGA 460
           +   +   ++AP S+     A
Sbjct: 70  SSAPSASSSSAPSSSSSAPSA 90

 Score = 38.9 bits (89), Expect = 0.032
 Identities = 24/75 (32%), Positives = 38/75 (50%)
 Frame = +2

Query: 218 AQRGSHVSRPSTLAFPGPRLAAAAPVQSAAAPSCSSSGDTCSLGGGASSFAGSLAPSGQA 397
           A   S  S PS+ +      +++AP  S++APS SSS    S    A S + S APS  +
Sbjct: 102 APSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSS 161

Query: 398 TKRRATPLAAAPESA 442
           +   +   ++AP S+
Sbjct: 162 SSAPSASSSSAPSSS 176

 Score = 36.2 bits (82), Expect = 0.21
 Identities = 24/86 (27%), Positives = 41/86 (46%)
 Frame = +2

Query: 197 AFKTAVPAQRGSHVSRPSTLAFPGPRLAAAAPVQSAAAPSCSSSGDTCSLGGGASSFAGS 376
           A  ++ P+   S     S+ + P    ++A    S++APS SSS  + S    A S + S
Sbjct: 151 ASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSAS-SSSAPSSSSS 209

Query: 377 LAPSGQATKRRATPLAAAPESAVKTT 454
            APS  ++   ++  +A   S+  TT
Sbjct: 210 SAPSASSSSAPSSSSSAPSSSSTTTT 235

 Score = 35.4 bits (80), Expect = 0.35
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +2

Query: 230 SHVSRPSTLAFPGPRLAAAAP-VQSAAAPSCSSSGDTCSLGGGASSFAGSLAPSGQATKR 406
           S  S PS  +   P  +++AP   S++APS SSS    +    A S + S APS  ++  
Sbjct: 113 SSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSA 172

Query: 407 RATPLAAAPESA 442
            ++  ++AP ++
Sbjct: 173 PSSSSSSAPSAS 184

 Score = 35.0 bits (79), Expect = 0.46
 Identities = 24/75 (32%), Positives = 38/75 (50%)
 Frame = +2

Query: 218 AQRGSHVSRPSTLAFPGPRLAAAAPVQSAAAPSCSSSGDTCSLGGGASSFAGSLAPSGQA 397
           A   S  S PS+ +      +++AP  S++APS SSS    S    A S + S APS  +
Sbjct: 87  APSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSS-SSSAPSASSSSAPSSSS 145

Query: 398 TKRRATPLAAAPESA 442
           +   +   ++AP S+
Sbjct: 146 SSAPSASSSSAPSSS 160

 Score = 34.7 bits (78), Expect = 0.60
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +2

Query: 218 AQRGSHVSRPSTLAFPGPRLAAAAPVQSAA-APSCSSSGDTCSLGGGASSFAGSLAPSGQ 394
           A   S  S PS+ +      +++AP  S++ APS SSS    S    A S + S APS  
Sbjct: 117 APSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSS 176

Query: 395 ATKRRATPLAAAPESAVKTTGA 460
           ++   +   ++AP S+     A
Sbjct: 177 SSSAPSASSSSAPSSSSSAPSA 198

 Score = 34.7 bits (78), Expect = 0.60
 Identities = 23/85 (27%), Positives = 38/85 (44%)
 Frame = +2

Query: 206 TAVPAQRGSHVSRPSTLAFPGPRLAAAAPVQSAAAPSCSSSGDTCSLGGGASSFAGSLAP 385
           ++ P+   S     S+ + P    ++A    S++APS SSS    S    A S + S AP
Sbjct: 130 SSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAP 189

Query: 386 SGQATKRRATPLAAAPESAVKTTGA 460
           S  ++   A+  +A   S+     A
Sbjct: 190 SSSSSAPSASSSSAPSSSSSSAPSA 214

 Score = 34.3 bits (77), Expect = 0.78
 Identities = 23/72 (31%), Positives = 39/72 (53%), Gaps = 1/72 (1%)
 Frame = +2

Query: 230 SHVSRPSTLAFPGPRLAAAAP-VQSAAAPSCSSSGDTCSLGGGASSFAGSLAPSGQATKR 406
           S  S PS  +   P  +++AP   S++APS SSS  + S     SS + S APS  ++  
Sbjct: 98  SSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSS-SSSSAPSASSSSA 156

Query: 407 RATPLAAAPESA 442
            ++  ++AP ++
Sbjct: 157 PSSSSSSAPSAS 168

 Score = 34.3 bits (77), Expect = 0.78
 Identities = 23/72 (31%), Positives = 39/72 (53%), Gaps = 1/72 (1%)
 Frame = +2

Query: 230 SHVSRPSTLAFPGPRLAAAAP-VQSAAAPSCSSSGDTCSLGGGASSFAGSLAPSGQATKR 406
           S  S PS  +   P  +++AP   S++APS SSS  + S     SS + S APS  ++  
Sbjct: 6   SSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSS-SSSSAPSASSSSA 64

Query: 407 RATPLAAAPESA 442
            ++  ++AP ++
Sbjct: 65  PSSSSSSAPSAS 76

 Score = 33.9 bits (76), Expect = 1.0
 Identities = 22/68 (32%), Positives = 36/68 (52%)
 Frame = +2

Query: 239 SRPSTLAFPGPRLAAAAPVQSAAAPSCSSSGDTCSLGGGASSFAGSLAPSGQATKRRATP 418
           S PS+ +      +++AP  S++APS SSS    S    A S + S APS  ++   +  
Sbjct: 2   SAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSS-SSSAPSASSSSAPSSSSSSAPSAS 60

Query: 419 LAAAPESA 442
            ++AP S+
Sbjct: 61  SSSAPSSS 68

 Score = 33.5 bits (75), Expect = 1.3
 Identities = 23/72 (31%), Positives = 38/72 (51%), Gaps = 1/72 (1%)
 Frame = +2

Query: 230 SHVSRPSTLAFPGPRLAAAAP-VQSAAAPSCSSSGDTCSLGGGASSFAGSLAPSGQATKR 406
           S  S PS  +   P  +++AP   S++APS SSS  + S     SS   S APS  ++  
Sbjct: 83  SSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSS--SSSAPSASSSSA 140

Query: 407 RATPLAAAPESA 442
            ++  ++AP ++
Sbjct: 141 PSSSSSSAPSAS 152

 Score = 33.5 bits (75), Expect = 1.3
 Identities = 24/99 (24%), Positives = 45/99 (45%)
 Frame = +2

Query: 146 PSNAPLGQQFVTGAMRLAFKTAVPAQRGSHVSRPSTLAFPGPRLAAAAPVQSAAAPSCSS 325
           PS++       + +   +  ++ P+   S     S+ + P    ++A    S++APS SS
Sbjct: 126 PSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASS 185

Query: 326 SGDTCSLGGGASSFAGSLAPSGQATKRRATPLAAAPESA 442
           S    S    A S + S APS  ++   +   ++AP S+
Sbjct: 186 SSAPSS-SSSAPSASSSSAPSSSSSSAPSASSSSAPSSS 223

 Score = 32.7 bits (73), Expect = 2.3
 Identities = 21/85 (24%), Positives = 38/85 (44%)
 Frame = +2

Query: 218 AQRGSHVSRPSTLAFPGPRLAAAAPVQSAAAPSCSSSGDTCSLGGGASSFAGSLAPSGQA 397
           A   S  S PS  +   P  +++AP  S+++   SSS    S    ++  + S APS  +
Sbjct: 172 APSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSSSS 231

Query: 398 TKRRATPLAAAPESAVKTTGAVDKH 472
           T    T +   P+  + ++ +   H
Sbjct: 232 T---TTTMDPTPDPVLPSSSSSSSH 253

 Score = 32.7 bits (73), Expect = 2.3
 Identities = 25/81 (30%), Positives = 38/81 (46%)
 Frame = +2

Query: 218 AQRGSHVSRPSTLAFPGPRLAAAAPVQSAAAPSCSSSGDTCSLGGGASSFAGSLAPSGQA 397
           A   S  S PS+ +      +++AP  S++APS SSS    S    A S + S APS  +
Sbjct: 72  APSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSS-SSSAPSASSSSAPSSSS 130

Query: 398 TKRRATPLAAAPESAVKTTGA 460
           +   A+  +A   S+     A
Sbjct: 131 SAPSASSSSAPSSSSSSAPSA 151

 Score = 32.3 bits (72), Expect = 3.0
 Identities = 22/72 (30%), Positives = 36/72 (49%), Gaps = 1/72 (1%)
 Frame = +2

Query: 230 SHVSRPSTLAFPGPRLAAAAP-VQSAAAPSCSSSGDTCSLGGGASSFAGSLAPSGQATKR 406
           S  S PS  +   P  +++AP   S++APS SSS    +    A S + S APS  ++  
Sbjct: 21  SSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSA 80

Query: 407 RATPLAAAPESA 442
            ++  +A   S+
Sbjct: 81  PSSSSSAPSASS 92

 Score = 32.0 bits (71), Expect = 3.9
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +2

Query: 218 AQRGSHVSRPSTLAFPGPRLAAAAPVQSAA-APSCSSSGDTCSLGGGASSFAGSLAPSGQ 394
           A   S  S PS+ +      +++AP  S++ APS SSS    S    A S + S APS  
Sbjct: 25  APSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSS 84

Query: 395 ATKRRATPLAAAPESAVKTTGA 460
           ++   A+  ++AP S+     A
Sbjct: 85  SSAPSASS-SSAPSSSSSAPSA 105

 Score = 31.6 bits (70), Expect = 5.1
 Identities = 22/82 (26%), Positives = 38/82 (45%)
 Frame = +2

Query: 197 AFKTAVPAQRGSHVSRPSTLAFPGPRLAAAAPVQSAAAPSCSSSGDTCSLGGGASSFAGS 376
           A  ++ P+   S     S+ + P    ++A    S++APS SSS  + S     SS   S
Sbjct: 43  ASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSS--SS 100

Query: 377 LAPSGQATKRRATPLAAAPESA 442
            APS  ++   ++  +A   S+
Sbjct: 101 SAPSASSSSAPSSSSSAPSASS 122

 Score = 31.2 bits (69), Expect = 6.6
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +2

Query: 218 AQRGSHVSRPSTLAFPGPRLAAAAP-VQSAAAPSCSSSGDTCSLGGGASSFAGSLAPSGQ 394
           A   S  S PS  +   P  +++AP   S++APS SSS  + S     SS   S APS  
Sbjct: 64  APSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSS--SSSAPSAS 121

Query: 395 ATKRRATPLAAAPESA 442
           ++   ++  +A   S+
Sbjct: 122 SSSAPSSSSSAPSASS 137

 Score = 30.8 bits (68), Expect = 8.6
 Identities = 24/85 (28%), Positives = 40/85 (46%)
 Frame = +2

Query: 206 TAVPAQRGSHVSRPSTLAFPGPRLAAAAPVQSAAAPSCSSSGDTCSLGGGASSFAGSLAP 385
           ++ P+   S     S+ + P    ++A    S++APS SSS    S    A S + S AP
Sbjct: 38  SSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSS-SSSAPSASSSSAP 96

Query: 386 SGQATKRRATPLAAAPESAVKTTGA 460
           S  ++   A+  ++AP S+     A
Sbjct: 97  SSSSSAPSASS-SSAPSSSSSAPSA 120



EST assemble image


clone accession position
1 HCL070e02_r AV643486 1 480
2 HCL070e01_r AV643485 16 449
3 LCL010e09_r AV626522 27 296




Chlamydomonas reinhardtii
Kazusa DNA Research Institute