Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002611A_C01 KCC002611A_c01
(526 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_823807.1| putative DNA processing Smf-family protein [Str... 42 0.005
ref|NP_194482.1| expressed protein [Arabidopsis thaliana] gi|343... 38 0.069
ref|NP_629738.1| conserved hypothetical protein SC2E1.21 [Strept... 38 0.090
gb|AAF62174.1|AF247451_1 hyperpolarization-activated, cyclic nuc... 37 0.12
sp|Q9JKA9|HCN2_RAT Potassium/sodium hyperpolarization-activated ... 37 0.12
>ref|NP_823807.1| putative DNA processing Smf-family protein [Streptomyces
avermitilis MA-4680] gi|29606279|dbj|BAC70342.1|
putative DNA processing Smf-family protein [Streptomyces
avermitilis MA-4680]
Length = 381
Score = 42.0 bits (97), Expect = 0.005
Identities = 50/169 (29%), Positives = 66/169 (38%), Gaps = 3/169 (1%)
Frame = +2
Query: 26 SVYKASRL*AEALHPHESFAAYRWAKV---LRQSELKTYIAE*LQGGSEAASQGEARREL 196
+V A RL E P +A RWA + Q+ + +AE Q G+ G+A
Sbjct: 32 AVAVARRL-VEGGEPFPRVSAKRWAGLRGRAAQARPERDLAEARQAGARFVCPGDAE--- 87
Query: 197 RTWWPTCVEELPISYV*KDGAQSATAGPGGPPLPSQALYHDAVLGVRCKRACWELGEHVA 376
WP +++L D + G P L AL AV+G R AC E G H+A
Sbjct: 88 ---WPAQLDDLA------DARPTGLWVRGRPSLRMWALRSVAVVGAR---ACTEYGAHMA 135
Query: 377 CHSARLTLASCVTSTAAARAGPFGIPGAAQRATLHSCGGHAVCRLGAEV 523
A L G +G+ GAA R L GG V L V
Sbjct: 136 ---AALGAGLAERGWVVVSGGAYGVDGAAHRGAL-GAGGATVAVLACGV 180
>ref|NP_194482.1| expressed protein [Arabidopsis thaliana]
gi|34395735|sp|Q9T076|ENL2_ARATH Early nodulin-like
protein 2 precursor (Phytocyanin-like protein)
gi|7487504|pir||T05857 hypothetical protein T29A15.10 -
Arabidopsis thaliana gi|4469003|emb|CAB38264.1| putative
protein [Arabidopsis thaliana]
gi|7269606|emb|CAB81402.1| putative protein [Arabidopsis
thaliana] gi|11762218|gb|AAG40387.1|AF325035_1 AT4g27520
[Arabidopsis thaliana] gi|23397249|gb|AAN31906.1|
unknown protein [Arabidopsis thaliana]
gi|24417234|gb|AAN60227.1| unknown [Arabidopsis
thaliana]
Length = 349
Score = 38.1 bits (87), Expect = 0.069
Identities = 35/113 (30%), Positives = 46/113 (39%), Gaps = 5/113 (4%)
Frame = +3
Query: 159 ARRPRREKRGGSSAPGGLHALKSSRSLMSERMGPSPPLPDRAVHPFLLKLFTMTPFSACA 338
A P G + PGG H+ KSS + P P H +P S+ A
Sbjct: 142 AAAPGSSTPGSMTPPGGAHSPKSSSPVSPTTSPPGSTTPPGGAH---------SPKSSSA 192
Query: 339 ---ANAPAGNLA--NTSPVIVQDSHSPAASPARQRPGPGRSESPARPSALRST 482
A +P G++A + SPV SP SP P P +S SP PS+ T
Sbjct: 193 VSPATSPPGSMAPKSGSPV------SPTTSP----PAPPKSTSPVSPSSAPMT 235
>ref|NP_629738.1| conserved hypothetical protein SC2E1.21 [Streptomyces coelicolor
A3(2)] gi|7479422|pir||T34789 hypothetical protein
SC2E1.21 SC2E1.21 - Streptomyces coelicolor
gi|3191997|emb|CAA19396.1| conserved hypothetical
protein SC2E1.21 [Streptomyces coelicolor A3(2)]
Length = 382
Score = 37.7 bits (86), Expect = 0.090
Identities = 28/73 (38%), Positives = 32/73 (43%)
Frame = +2
Query: 281 GGPPLPSQALYHDAVLGVRCKRACWELGEHVACHSARLTLASCVTSTAAARAGPFGIPGA 460
GGP L AL AV+G R AC E G H+A A L G +GI GA
Sbjct: 210 GGPSLRMWALRSVAVVGAR---ACTEYGAHMA---ATLAAGLAERGWVVVSGGAYGIDGA 263
Query: 461 AQRATLHSCGGHA 499
A R L + G A
Sbjct: 264 AHRGALGAGGATA 276
>gb|AAF62174.1|AF247451_1 hyperpolarization-activated, cyclic nucleotide-gated potassium
channel 2 [Rattus norvegicus]
Length = 834
Score = 37.4 bits (85), Expect = 0.12
Identities = 27/82 (32%), Positives = 37/82 (44%), Gaps = 2/82 (2%)
Frame = +3
Query: 240 MSERMGPSPPLPDRAVHPFLLKLFTMTPFSAC--AANAPAGNLANTSPVIVQDSHSPAAS 413
+ +R+G PP P R V + L S C A G LA SP +V+ + P
Sbjct: 651 LGQRVGFFPPPPPRQVRSAIATLQQAVAMSFCPQVARPLVGPLALGSPRLVRRA-PPGPL 709
Query: 414 PARQRPGPGRSESPARPSALRS 479
P PGP + PA PS+ R+
Sbjct: 710 PPAASPGPPAASPPAAPSSPRA 731
>sp|Q9JKA9|HCN2_RAT Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 2
Length = 834
Score = 37.4 bits (85), Expect = 0.12
Identities = 27/82 (32%), Positives = 37/82 (44%), Gaps = 2/82 (2%)
Frame = +3
Query: 240 MSERMGPSPPLPDRAVHPFLLKLFTMTPFSAC--AANAPAGNLANTSPVIVQDSHSPAAS 413
+ +R+G PP P R V + L S C A G LA SP +V+ + P
Sbjct: 651 LGQRVGFFPPPPPRQVRSAIATLQQAVAMSFCPQVARPLVGPLALGSPRLVRRA-PPGPL 709
Query: 414 PARQRPGPGRSESPARPSALRS 479
P PGP + PA PS+ R+
Sbjct: 710 PPAASPGPPAASPPAAPSSPRA 731
