KCC002608A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002608A_C01 KCC002608A_c01
cttgttggtaccttttgatttatatagcttcgcccctcggggtgtccgccatctaaacat
gGCGCAGTGGAAGGCTGCTGTGCTGTTGCTGGCGCTGGCCTGCGCCTCTTACGGCTTCGG
CGTTTGGGCTGAGGAGGAGAAGCTCGGCACCGTTATTGGTATCGACCTAGGCACGACCTA
CTCTTGCGTGGGCGTGTACAAGAACGGCCGTGTGGAGATTATTGCGAACGACCAGGGCAA
CCGCATCACTCCCTCGTATGTGGCCTTCACCGACGAGGAGCGCCTGATCGGAGACGCTGC
CAAGAACCAGGCTACCGTCAACCCCAAGCGCACCGTCTACGACGTCAAGCGCCTGATCGG
CCGCAAGTACGAGGACAAGGAGGTGCAGCGCGACAAGAAGCTTGTGTCCTATGACATTGC
TGACCGCCAGGGTAAGCCCTATGTGGCCGTGGACGTCAAGGGCGAGCAGAAGGTGTTCTC
GCCTGAGGAGATCTCGGCTATGATTCTTCAGAAGATGAAGGACACTGCTGAGGCCTACCT
GGGCAAGACTGTCAAGCACGCTGTGGTCACCGTGCCCGCGTACTTCAACGATGCCCAGCG
CCAGGCCACCAAGGACGCCGGCACCATTTCTGGCCTGAACGTGGTGCGCATCATCAACGA
GCCCAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002608A_C01 KCC002608A_c01
         (666 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAC37635.1| luminal binding protein, BiP [Scherffelia dubia]      306  1e-82
sp|Q03685|BIP5_TOBAC Luminal binding protein 5 precursor (BiP 5)...   298  4e-80
sp|P24067|BIP2_MAIZE Luminal binding protein 2 precursor (BiP2) ...   296  2e-79
sp|O24581|BIP3_MAIZE Luminal binding protein 3 precursor (BiP3) ...   295  3e-79
sp|P49118|BIP_LYCES Luminal binding protein precursor (BiP) (78 ...   292  4e-78

>emb|CAC37635.1| luminal binding protein, BiP [Scherffelia dubia]
          Length = 665

 Score =  306 bits (785), Expect = 1e-82
 Identities = 161/199 (80%), Positives = 172/199 (85%), Gaps = 2/199 (1%)
 Frame = +2

Query: 74  AAVLLLALACASYGFGVWAEEE--KLGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRI 247
           +AV  LAL CA     V AEEE  K+GTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRI
Sbjct: 16  SAVCALALLCAV----VRAEEEAKKIGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRI 71

Query: 248 TPSYVAFTDEERLIGDAAKNQATVNPKRTVYDVKRLIGRKYEDKEVQRDKKLVSYDIADR 427
           TPSYVAFTD ERLIGDAAKNQAT NP+R VYDVKRLIGRK+ DK+VQRD KLVSY I D 
Sbjct: 72  TPSYVAFTDNERLIGDAAKNQATSNPERPVYDVKRLIGRKFTDKDVQRDMKLVSYTIIDH 131

Query: 428 QGKPYVAVDVKGEQKVFSPEEISAMILQKMKDTAEAYLGKTVKHAVVTVPAYFNDAQRQA 607
            GKPY+ VDVKGE+K FSPEE+SAMIL KMK+TAEA+LGKTVKHAV TVPAYFNDAQRQA
Sbjct: 132 NGKPYIQVDVKGEKKSFSPEEVSAMILVKMKETAEAFLGKTVKHAVXTVPAYFNDAQRQA 191

Query: 608 TKDAGTISGLNVVRIINEP 664
           TKDAG I+GL V RIINEP
Sbjct: 192 TKDAGVIAGLAVERIINEP 210

>sp|Q03685|BIP5_TOBAC Luminal binding protein 5 precursor (BiP 5) (78 kDa
           glucose-regulated protein homolog 5) (GRP 78-5)
           gi|100340|pir||S21880 dnaK-type molecular chaperone blp5
           precursor - common tobacco gi|19813|emb|CAA42660.1|
           luminal binding protein (BiP) [Nicotiana tabacum]
          Length = 668

 Score =  298 bits (764), Expect = 4e-80
 Identities = 154/205 (75%), Positives = 172/205 (83%), Gaps = 6/205 (2%)
 Frame = +2

Query: 68  WKAAVLLLALACASYG----FGVWAEEE-KLGTVIGIDLGTTYSCVGVYKNGRVEIIAND 232
           WK    L+  A   +G    F +  EE  KLGTVIGIDLGTTYSCVGVYKNG VEIIAND
Sbjct: 5   WKRRASLIVFAIVLFGSLFAFSIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIAND 64

Query: 233 QGNRITPSYVAFTDEERLIGDAAKNQATVNPKRTVYDVKRLIGRKYEDKEVQRDKKLVSY 412
           QGNRITPS+VAFTD ERLIG+AAKNQA VNP+RT++DVKRLIGRK++DKEVQRDKKLV Y
Sbjct: 65  QGNRITPSWVAFTDGERLIGEAAKNQAAVNPERTIFDVKRLIGRKFDDKEVQRDKKLVPY 124

Query: 413 DIADRQGKPYVAVDVK-GEQKVFSPEEISAMILQKMKDTAEAYLGKTVKHAVVTVPAYFN 589
           +I ++ GKPY+ V +K GE KVFSPEEISAMIL KMK+TAEAYLGK +K AVVTVPAYFN
Sbjct: 125 EIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAYLGKKIKDAVVTVPAYFN 184

Query: 590 DAQRQATKDAGTISGLNVVRIINEP 664
           DAQRQATKDAG I+GLNV RIINEP
Sbjct: 185 DAQRQATKDAGVIAGLNVARIINEP 209

>sp|P24067|BIP2_MAIZE Luminal binding protein 2 precursor (BiP2) (Heat shock protein 70
           homolog 2) (B70) (B-70) gi|7441875|pir||T04078 dnaK-type
           molecular chaperone cBiPe2 - maize
           gi|1575128|gb|AAC49899.1| lumenal binding protein cBiPe2
           [Zea mays]
          Length = 663

 Score =  296 bits (757), Expect = 2e-79
 Identities = 154/206 (74%), Positives = 174/206 (83%), Gaps = 2/206 (0%)
 Frame = +2

Query: 53  LNMAQWKAAVLLLALACASYGFGVWAEE-EKLGTVIGIDLGTTYSCVGVYKNGRVEIIAN 229
           ++ A+  A +L + LA + + F V  EE +KLGTVIGIDLGTTYSCVGVYKNG VEIIAN
Sbjct: 1   MDRARGSAFLLGVLLAGSLFAFSVAKEETKKLGTVIGIDLGTTYSCVGVYKNGHVEIIAN 60

Query: 230 DQGNRITPSYVAFTDEERLIGDAAKNQATVNPKRTVYDVKRLIGRKYEDKEVQRDKKLVS 409
           DQGNRITPS+VAFTD ERLIG+AAKNQA VNP+RT++DVKRLIGRK+ DKEVQRD KLV 
Sbjct: 61  DQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTIFDVKRLIGRKFADKEVQRDMKLVP 120

Query: 410 YDIADRQGKPYVAVDVK-GEQKVFSPEEISAMILQKMKDTAEAYLGKTVKHAVVTVPAYF 586
           Y I ++ GKPY+ V +K GE KVFSPEEISAMIL KMKDTAEAYLGK +  AVVTVPAYF
Sbjct: 121 YKIINKDGKPYIQVKIKDGENKVFSPEEISAMILGKMKDTAEAYLGKKINDAVVTVPAYF 180

Query: 587 NDAQRQATKDAGTISGLNVVRIINEP 664
           NDAQRQATKDAG I+GLNV RIINEP
Sbjct: 181 NDAQRQATKDAGVIAGLNVARIINEP 206

>sp|O24581|BIP3_MAIZE Luminal binding protein 3 precursor (BiP3) gi|7441876|pir||T04080
           dnaK-type molecular chaperone cBiPe3 - maize
           gi|1575130|gb|AAC49900.1| lumenal binding protein cBiPe3
           [Zea mays]
          Length = 663

 Score =  295 bits (756), Expect = 3e-79
 Identities = 153/206 (74%), Positives = 174/206 (84%), Gaps = 2/206 (0%)
 Frame = +2

Query: 53  LNMAQWKAAVLLLALACASYGFGVWAEE-EKLGTVIGIDLGTTYSCVGVYKNGRVEIIAN 229
           ++  +  A +L + LA + + F V  EE +KLGTVIGIDLGTTYSCVGVYKNG VEIIAN
Sbjct: 1   MDRVRGSAFLLGVLLAGSLFAFSVAKEETKKLGTVIGIDLGTTYSCVGVYKNGHVEIIAN 60

Query: 230 DQGNRITPSYVAFTDEERLIGDAAKNQATVNPKRTVYDVKRLIGRKYEDKEVQRDKKLVS 409
           DQGNRITPS+VAFTD ERLIG+AAKNQA VNP+RT++DVKRLIGRK++DKEVQRD KLV 
Sbjct: 61  DQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTIFDVKRLIGRKFQDKEVQRDMKLVP 120

Query: 410 YDIADRQGKPYVAVDVK-GEQKVFSPEEISAMILQKMKDTAEAYLGKTVKHAVVTVPAYF 586
           Y I ++ GKPY+ V +K GE KVFSPEEISAMIL KMKDTAEAYLGK +  AVVTVPAYF
Sbjct: 121 YKIINKDGKPYIQVKIKDGENKVFSPEEISAMILGKMKDTAEAYLGKKINDAVVTVPAYF 180

Query: 587 NDAQRQATKDAGTISGLNVVRIINEP 664
           NDAQRQATKDAG I+GLNV RIINEP
Sbjct: 181 NDAQRQATKDAGVIAGLNVARIINEP 206

>sp|P49118|BIP_LYCES Luminal binding protein precursor (BiP) (78 kDa glucose-regulated
           protein homolog) (GRP 78) gi|170384|gb|AAA34139.1|
           glucose-regulated protein 78
          Length = 666

 Score =  292 bits (747), Expect = 4e-78
 Identities = 149/194 (76%), Positives = 164/194 (83%), Gaps = 1/194 (0%)
 Frame = +2

Query: 86  LLALACASYGFGVWAEEEKLGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVA 265
           ++ L C S       E  KLGTVIGIDLGTTYSCVGVYKNG VEIIANDQGNRITPS+VA
Sbjct: 16  IVLLGCLSALSNAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVA 75

Query: 266 FTDEERLIGDAAKNQATVNPKRTVYDVKRLIGRKYEDKEVQRDKKLVSYDIADRQGKPYV 445
           FTD ERLIG+AAKN A VNP+RT++DVKRLIGRK+EDKEVQRD KLV Y I  + GKPY+
Sbjct: 76  FTDNERLIGEAAKNLAAVNPERTIFDVKRLIGRKFEDKEVQRDMKLVPYKIVSKDGKPYI 135

Query: 446 AVDVK-GEQKVFSPEEISAMILQKMKDTAEAYLGKTVKHAVVTVPAYFNDAQRQATKDAG 622
            V +K GE KVFSPEEISAMIL KMK+TAEA+LGKT+K AVVTVPAYFNDAQRQATKDAG
Sbjct: 136 QVKIKDGEVKVFSPEEISAMILTKMKETAEAFLGKTIKDAVVTVPAYFNDAQRQATKDAG 195

Query: 623 TISGLNVVRIINEP 664
            I+GLNV RIINEP
Sbjct: 196 VIAGLNVARIINEP 209



EST assemble image


clone accession position
1 MXL062f09_r BP096665 1 503
2 HCL068d12_r AV643368 62 537
3 MXL012b04_r BP093694 205 666




Chlamydomonas reinhardtii
Kazusa DNA Research Institute