KCC002607A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002607A_C01 KCC002607A_c01
gtcgagcttagagtatcttcttttgtagcctctattcatcatataccaatagcagtcgag
cgAAAAGCAGTCGCACGATATAGGCCCTTGTGCTGGCAGAACCAGCCTATAGCTACGTCT
ATTTCCCCCAGCCTGGTACTGCAGCGCTGGGGGATAGCTGATTCAGCGGCGTTCGGCGCT
CCGATGGCCCGGGTCAGCCCACTTTCTATAGCCTGCAAGCCCAGCCTGGCCTCCCCTGAC
TGCTAGTTTAACCGTGGCCGGGAGCCGCGAGTGGGGGCCTATGAACGGGACCAGCTCGGG
CGGCCAAGAGTTGGCAGTCTTGGACACAGTCACAATCCCAGTATGGATTTACAGTTGTCT
CAGCCAGCGGCTGGTATGGGCCACTAGGGCCGCGTAGCGATACTTCAACAAGACGCTGGA
CGGATTCACGTCTTACAAATTCGGAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002607A_C01 KCC002607A_c01
         (446 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_303285.1| hypothetical protein XP_303285 [Homo sapiens]         37  0.080
dbj|BAC33764.1| unnamed protein product [Mus musculus]                 33  0.88
ref|NP_476544.1| brain-specific angiogenesis inhibitor 1-associa...    32  2.0
dbj|BAB63776.1| P0004A09.12 [Oryza sativa (japonica cultivar-gro...    32  2.0
ref|NP_692842.1| stage V sporulation protein AF [Oceanobacillus ...    32  2.6

>ref|XP_303285.1| hypothetical protein XP_303285 [Homo sapiens]
          Length = 273

 Score = 36.6 bits (83), Expect = 0.080
 Identities = 18/41 (43%), Positives = 20/41 (47%)
 Frame = +3

Query: 261 GAASGGL*TGPARAAKSWQSWTQSQSQYGFTVVSASGWYGP 383
           G+  G L     R AK W SWTQS+  Y  T   AS W  P
Sbjct: 199 GSGGGTLPVQQNRVAKKWHSWTQSRPDYPSTAQVASTWPKP 239

>dbj|BAC33764.1| unnamed protein product [Mus musculus]
          Length = 535

 Score = 33.1 bits (74), Expect = 0.88
 Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = -3

Query: 303 PPELVPFIGPHSRLPATVKLAVRGGQAG--LAGYRKWADPGHRSAERR*ISYPPALQYQA 130
           PPEL PF+G   R+ A   + V  G AG     Y  WAD   R A +    +PP  Q + 
Sbjct: 281 PPELAPFVG---RMSAQENVPVMNGVAGPDSEDYNPWAD---RKAAQPKSLFPPQFQSKL 334

Query: 129 GGNRRSYRLVLPAQGPIS 76
                SY   LP +  ++
Sbjct: 335 SD---SYSNTLPVRKSVT 349

>ref|NP_476544.1| brain-specific angiogenesis inhibitor 1-associated protein 2
           [Rattus norvegicus] gi|14906127|gb|AAK72488.1| insulin
           receptor tyrosine kinase substrate protein p53 [Rattus
           norvegicus]
          Length = 522

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = -3

Query: 303 PPELVPFIGPHSRLPATVKLAVRGGQAGL--AGYRKWADPGHRSAERR*ISYPPALQYQA 130
           PPEL PF+G   R+ A   + V  G AG     Y  WAD   ++A+ + +S PP  Q + 
Sbjct: 281 PPELAPFVG---RMSAQENVPVMNGVAGADSEDYNPWAD--RKAAQPKSLS-PPQSQSKL 334

Query: 129 GGNRRSYRLVLPAQGPIS 76
                SY   LP +  ++
Sbjct: 335 SD---SYSNTLPVRKSVT 349

>dbj|BAB63776.1| P0004A09.12 [Oryza sativa (japonica cultivar-group)]
          Length = 152

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 30/80 (37%), Positives = 36/80 (44%), Gaps = 1/80 (1%)
 Frame = +1

Query: 163 SAAFGAPMARVSPLSIACKPSLASPDC*FNRGREPRVGAYERDQLGRPRVGSLGHSHNPS 342
           +AA G P+ R  PL     PSL +PD    RG +      ER   GRP   SL  S +P 
Sbjct: 21  AAAAGRPLPRGIPL-----PSLPNPDPAEGRGVDGGAAGGERGSGGRP--PSLAGSSSPP 73

Query: 343 MD-LQLSQPAAGMGH*GRVA 399
           +  L    PA G G  G  A
Sbjct: 74  LPVLPSPDPAEGRGVSGGAA 93

>ref|NP_692842.1| stage V sporulation protein AF [Oceanobacillus iheyensis HTE831]
           gi|22777605|dbj|BAC13877.1| stage V sporulation protein
           AF [Oceanobacillus iheyensis HTE831]
          Length = 485

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -1

Query: 230 ARLGLQAIESGLTRAIGAPNAAESAIPQRCSTRLGEIDVAIGWFCQHKGLYRATA 66
           A +GL  +      +I  P+A  +A+    +  +G++ V +GWF     LY ATA
Sbjct: 340 AEIGLDMLRMA---SIHTPSALGTALGLVAAIMIGDVSVQVGWFTNEVVLYIATA 391



EST assemble image


clone accession position
1 MXL073d11_r BP097309 1 366
2 HCL068a11_r AV643348 63 446




Chlamydomonas reinhardtii
Kazusa DNA Research Institute