Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002606A_C01 KCC002606A_c01
(513 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD27470.1| SPAPB18E9.04c [Schizosaccharomyces pombe] 42 0.006
ref|NP_014260.1| Required for LacZ RNA expression from certain p... 40 0.013
dbj|BAC65530.1| mKIAA0324 protein [Mus musculus] 40 0.017
ref|NP_780438.1| RIKEN cDNA 5033413A03 [Mus musculus] gi|2635495... 40 0.017
ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus] 40 0.017
>emb|CAD27470.1| SPAPB18E9.04c [Schizosaccharomyces pombe]
Length = 800
Score = 41.6 bits (96), Expect = 0.006
Identities = 21/65 (32%), Positives = 37/65 (56%)
Frame = +1
Query: 76 STSRMSKSQEPQARLATGSRLPTGASERLQTGASERLATGSSSTTSSSRPLTNATPAPLV 255
ST+ ++ + P + +T + P ++ T +S L+T +S TTS+S P T + P+
Sbjct: 351 STTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVT 410
Query: 256 PTLPP 270
PT+PP
Sbjct: 411 PTVPP 415
Score = 38.9 bits (89), Expect = 0.039
Identities = 20/65 (30%), Positives = 36/65 (54%)
Frame = +1
Query: 76 STSRMSKSQEPQARLATGSRLPTGASERLQTGASERLATGSSSTTSSSRPLTNATPAPLV 255
ST+ ++ + P + +T + P ++ T +S +T +S TTS+S P T + P+
Sbjct: 297 STTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVT 356
Query: 256 PTLPP 270
PT+PP
Sbjct: 357 PTVPP 361
Score = 36.6 bits (83), Expect = 0.19
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +1
Query: 106 PQARLATGSRLPTGASERLQTGASERLATGSSSTTSSSRPLTNATPAPLVPTLPP 270
P + +T +P ++ T +S T +S TTS+S P T + P+ PT+PP
Sbjct: 253 PTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPP 307
Score = 32.0 bits (71), Expect = 4.7
Identities = 17/57 (29%), Positives = 30/57 (51%), Gaps = 2/57 (3%)
Frame = +1
Query: 106 PQARLATGSRLPTGASERLQTGASERLATGSSSTTSSSRPL--TNATPAPLVPTLPP 270
P + +T +P ++ T +S T +S TTS+S P +++ P+ PT+PP
Sbjct: 197 PTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPP 253
>ref|NP_014260.1| Required for LacZ RNA expression from certain plasmids; suppressor of
the Transcriptional (T) defect of Hpr1 (H) by
Overexpression (O); plays a role in transcription
elongation by RNA polymerase II; Rlr1p [Saccharomyces
cerevisiae] gi|1710594|sp|P53552|RLR1_YEAST RLR1 protein
(THO2 protein) gi|1078062|pir||S55144 RLR1 protein -
yeast (Saccharomyces cerevisiae) gi|780548|gb|AAA93160.1|
Rlr1p [Saccharomyces cerevisiae]
gi|854498|emb|CAA86886.1| orf9 [Saccharomyces cerevisiae]
gi|1302087|emb|CAA96023.1| RLR1 [Saccharomyces
cerevisiae]
Length = 1597
Score = 40.4 bits (93), Expect = 0.013
Identities = 23/75 (30%), Positives = 37/75 (48%)
Frame = +1
Query: 100 QEPQARLATGSRLPTGASERLQTGASERLATGSSSTTSSSRPLTNATPAPLVPTLPPIVE 279
Q Q ++A +L S+RLQ + +A+GS+ S R T + P++PT P +
Sbjct: 1234 QNEQKQVALRKQLELNKSQRLQNDPPKSVASGSAGLNSKDR-YTYSRNEPVIPTKPSSSQ 1292
Query: 280 HYYGFANSYVDDMKH 324
Y +VDD+ H
Sbjct: 1293 WSYSKVTRHVDDINH 1307
>dbj|BAC65530.1| mKIAA0324 protein [Mus musculus]
Length = 1754
Score = 40.0 bits (92), Expect = 0.017
Identities = 38/131 (29%), Positives = 56/131 (42%)
Frame = +2
Query: 83 RGCPSRKSPRPGLRRAAGCRLEPVNDSKLGLRSDSRRVPHPQPAQAARSQMRLQRRWCRH 262
R PS SP P + + R V+ + S R P P+P RS+ R +R R
Sbjct: 732 RRSPSVSSPEPTEKSRSSRRRRSVSSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTR- 790
Query: 263 CLLLSNTTTVSRTATSTT*STRACARRRAI*TNG*ATSQRQESLGS*GRSATRALATPTS 442
TT R + ++ ST RR+ + T +R+ G RS TR ++ TS
Sbjct: 791 -------TTRRRDRSGSSQST--SRRRQRSRSRSRVTRRRRGGSGYHSRSPTRQESSRTS 841
Query: 443 SQRRPRHASPP 475
S+RR + P
Sbjct: 842 SRRRRGRSRTP 852
Score = 34.7 bits (78), Expect = 0.73
Identities = 38/136 (27%), Positives = 57/136 (40%), Gaps = 10/136 (7%)
Frame = +2
Query: 98 RKSPRPGLRRAAGCRLEPVNDSKLGLRSDSRRVPHPQPAQAARSQMRLQRRWCRHCLLLS 277
++S R RR G P+ K RS SR P P +R+ RR L+S
Sbjct: 835 QESSRTSSRRRRGRSRTPLTSRK---RSRSRTSPAPWKRSRSRASPATHRRSRSRTPLIS 891
Query: 278 NTTTVSRTATSTT*STRACARRRAI*TNG*ATSQRQES-------LGS*GRSATRALA-- 430
+ SRT+ + +R+ RRR+ + +R S S R+ TR +
Sbjct: 892 RRRSRSRTSPVSRRRSRSVNRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTRRRSRS 951
Query: 431 -TPTSSQRRPRHASPP 475
TP ++RR R +PP
Sbjct: 952 RTPPVTRRRSRSRTPP 967
>ref|NP_780438.1| RIKEN cDNA 5033413A03 [Mus musculus] gi|26354955|dbj|BAC41104.1|
unnamed protein product [Mus musculus]
Length = 2607
Score = 40.0 bits (92), Expect = 0.017
Identities = 38/131 (29%), Positives = 56/131 (42%)
Frame = +2
Query: 83 RGCPSRKSPRPGLRRAAGCRLEPVNDSKLGLRSDSRRVPHPQPAQAARSQMRLQRRWCRH 262
R PS SP P + + R V+ + S R P P+P RS+ R +R R
Sbjct: 1585 RRSPSVSSPEPTEKSRSSRRRRSVSSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTR- 1643
Query: 263 CLLLSNTTTVSRTATSTT*STRACARRRAI*TNG*ATSQRQESLGS*GRSATRALATPTS 442
TT R + ++ ST RR+ + T +R+ G RS TR ++ TS
Sbjct: 1644 -------TTRRRDRSGSSQST--SRRRQRSRSRSRVTRRRRGGSGYHSRSPTRQESSRTS 1694
Query: 443 SQRRPRHASPP 475
S+RR + P
Sbjct: 1695 SRRRRGRSRTP 1705
Score = 33.5 bits (75), Expect = 1.6
Identities = 38/136 (27%), Positives = 57/136 (40%), Gaps = 10/136 (7%)
Frame = +2
Query: 98 RKSPRPGLRRAAGCRLEPVNDSKLGLRSDSRRVPHPQPAQAARSQMRLQRRWCRHCLLLS 277
++S R RR G P+ K RS SR P P +R+ RR L+S
Sbjct: 1688 QESSRTSSRRRRGRSRTPLTSRK---RSRSRTSPAPWKRSRSRASPATHRRSRSITPLIS 1744
Query: 278 NTTTVSRTATSTT*STRACARRRAI*TNG*ATSQRQES-------LGS*GRSATRALA-- 430
+ SRT+ + +R+ RRR+ + +R S S R+ TR +
Sbjct: 1745 RRRSRSRTSPVSRRRSRSVNRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTRRRSRS 1804
Query: 431 -TPTSSQRRPRHASPP 475
TP ++RR R +PP
Sbjct: 1805 RTPPVTRRRSRSRTPP 1820
>ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus]
Length = 2607
Score = 40.0 bits (92), Expect = 0.017
Identities = 38/131 (29%), Positives = 56/131 (42%)
Frame = +2
Query: 83 RGCPSRKSPRPGLRRAAGCRLEPVNDSKLGLRSDSRRVPHPQPAQAARSQMRLQRRWCRH 262
R PS SP P + + R V+ + S R P P+P RS+ R +R R
Sbjct: 1585 RRSPSVSSPEPTEKSRSSRRRRSVSSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTR- 1643
Query: 263 CLLLSNTTTVSRTATSTT*STRACARRRAI*TNG*ATSQRQESLGS*GRSATRALATPTS 442
TT R + ++ ST RR+ + T +R+ G RS TR ++ TS
Sbjct: 1644 -------TTRRRDRSGSSQST--SRRRQRSRSRSRVTRRRRGGSGYHSRSPTRQESSRTS 1694
Query: 443 SQRRPRHASPP 475
S+RR + P
Sbjct: 1695 SRRRRGRSRTP 1705
Score = 34.7 bits (78), Expect = 0.73
Identities = 38/136 (27%), Positives = 57/136 (40%), Gaps = 10/136 (7%)
Frame = +2
Query: 98 RKSPRPGLRRAAGCRLEPVNDSKLGLRSDSRRVPHPQPAQAARSQMRLQRRWCRHCLLLS 277
++S R RR G P+ K RS SR P P +R+ RR L+S
Sbjct: 1688 QESSRTSSRRRRGRSRTPLTSRK---RSRSRTSPAPWKRSRSRASPATHRRSRSRTPLIS 1744
Query: 278 NTTTVSRTATSTT*STRACARRRAI*TNG*ATSQRQES-------LGS*GRSATRALA-- 430
+ SRT+ + +R+ RRR+ + +R S S R+ TR +
Sbjct: 1745 RRRSRSRTSPVSRRRSRSVNRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTRRRSRS 1804
Query: 431 -TPTSSQRRPRHASPP 475
TP ++RR R +PP
Sbjct: 1805 RTPPVTRRRSRSRTPP 1820