KCC002606A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002606A_C01 KCC002606A_c01
cacGACAATCATTTGCTTTAATCCATAGCTTGCTGATGAAGAAACACGCTCACTAGCCGA
AGGTTTTATTTACGCAGCACTTCGAGGATGTCCAAGTCGCAAGAGCCCCAGGCCAGGCTT
GCGACGGGCAGCAGGCTGCCGACTGGAGCCAGTGAACGACTCCAAACTGGGGCTTCGGAG
CGACTCGCGACGGGTTCCTCATCCACAACCAGCTCAAGCCGCCCGCTCACAAATGCGACT
CCAGCGCCGCTGGTGCCGACATTGCCTCCTATTGTCGAACACTACTACGGTTTCGCGAAC
AGCTACGTCGACGACATGAAGCACACGGGCGTGCGCAAGACGCAGAGCGATATAAACAAA
CGGCTAGGCTACTTCACAACGCCAGGAGAGCCTCGGCTCATAGGGTCGTTCGGCTACACG
AGCCCTAGCTACACCGACCTCAAGCCAGCGGCGCCCGCGGCACGCGTCGCCACCAAGCCT
CACGGGCTCACCACCGCGGGGGTGACCCTGCGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002606A_C01 KCC002606A_c01
         (513 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAD27470.1| SPAPB18E9.04c [Schizosaccharomyces pombe]              42  0.006
ref|NP_014260.1| Required for LacZ RNA expression from certain p...    40  0.013
dbj|BAC65530.1| mKIAA0324 protein [Mus musculus]                       40  0.017
ref|NP_780438.1| RIKEN cDNA 5033413A03 [Mus musculus] gi|2635495...    40  0.017
ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus]                  40  0.017

>emb|CAD27470.1| SPAPB18E9.04c [Schizosaccharomyces pombe]
          Length = 800

 Score = 41.6 bits (96), Expect = 0.006
 Identities = 21/65 (32%), Positives = 37/65 (56%)
 Frame = +1

Query: 76  STSRMSKSQEPQARLATGSRLPTGASERLQTGASERLATGSSSTTSSSRPLTNATPAPLV 255
           ST+ ++ +  P +  +T +  P  ++    T +S  L+T +S TTS+S P T  +  P+ 
Sbjct: 351 STTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVT 410

Query: 256 PTLPP 270
           PT+PP
Sbjct: 411 PTVPP 415

 Score = 38.9 bits (89), Expect = 0.039
 Identities = 20/65 (30%), Positives = 36/65 (54%)
 Frame = +1

Query: 76  STSRMSKSQEPQARLATGSRLPTGASERLQTGASERLATGSSSTTSSSRPLTNATPAPLV 255
           ST+ ++ +  P +  +T +  P  ++    T +S   +T +S TTS+S P T  +  P+ 
Sbjct: 297 STTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVT 356

Query: 256 PTLPP 270
           PT+PP
Sbjct: 357 PTVPP 361

 Score = 36.6 bits (83), Expect = 0.19
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +1

Query: 106 PQARLATGSRLPTGASERLQTGASERLATGSSSTTSSSRPLTNATPAPLVPTLPP 270
           P +  +T   +P  ++    T +S    T +S TTS+S P T  +  P+ PT+PP
Sbjct: 253 PTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPP 307

 Score = 32.0 bits (71), Expect = 4.7
 Identities = 17/57 (29%), Positives = 30/57 (51%), Gaps = 2/57 (3%)
 Frame = +1

Query: 106 PQARLATGSRLPTGASERLQTGASERLATGSSSTTSSSRPL--TNATPAPLVPTLPP 270
           P +  +T   +P  ++    T +S    T +S TTS+S P   +++   P+ PT+PP
Sbjct: 197 PTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPP 253

>ref|NP_014260.1| Required for LacZ RNA expression from certain plasmids; suppressor of
            the Transcriptional (T) defect of Hpr1 (H) by
            Overexpression (O); plays a role in transcription
            elongation by RNA polymerase II; Rlr1p [Saccharomyces
            cerevisiae] gi|1710594|sp|P53552|RLR1_YEAST RLR1 protein
            (THO2 protein) gi|1078062|pir||S55144 RLR1 protein -
            yeast (Saccharomyces cerevisiae) gi|780548|gb|AAA93160.1|
            Rlr1p [Saccharomyces cerevisiae]
            gi|854498|emb|CAA86886.1| orf9 [Saccharomyces cerevisiae]
            gi|1302087|emb|CAA96023.1| RLR1 [Saccharomyces
            cerevisiae]
          Length = 1597

 Score = 40.4 bits (93), Expect = 0.013
 Identities = 23/75 (30%), Positives = 37/75 (48%)
 Frame = +1

Query: 100  QEPQARLATGSRLPTGASERLQTGASERLATGSSSTTSSSRPLTNATPAPLVPTLPPIVE 279
            Q  Q ++A   +L    S+RLQ    + +A+GS+   S  R  T +   P++PT P   +
Sbjct: 1234 QNEQKQVALRKQLELNKSQRLQNDPPKSVASGSAGLNSKDR-YTYSRNEPVIPTKPSSSQ 1292

Query: 280  HYYGFANSYVDDMKH 324
              Y     +VDD+ H
Sbjct: 1293 WSYSKVTRHVDDINH 1307

>dbj|BAC65530.1| mKIAA0324 protein [Mus musculus]
          Length = 1754

 Score = 40.0 bits (92), Expect = 0.017
 Identities = 38/131 (29%), Positives = 56/131 (42%)
 Frame = +2

Query: 83   RGCPSRKSPRPGLRRAAGCRLEPVNDSKLGLRSDSRRVPHPQPAQAARSQMRLQRRWCRH 262
            R  PS  SP P  +  +  R   V+  +    S   R P P+P    RS+ R +R   R 
Sbjct: 732  RRSPSVSSPEPTEKSRSSRRRRSVSSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTR- 790

Query: 263  CLLLSNTTTVSRTATSTT*STRACARRRAI*TNG*ATSQRQESLGS*GRSATRALATPTS 442
                   TT  R  + ++ ST    RR+   +    T +R+   G   RS TR  ++ TS
Sbjct: 791  -------TTRRRDRSGSSQST--SRRRQRSRSRSRVTRRRRGGSGYHSRSPTRQESSRTS 841

Query: 443  SQRRPRHASPP 475
            S+RR   +  P
Sbjct: 842  SRRRRGRSRTP 852

 Score = 34.7 bits (78), Expect = 0.73
 Identities = 38/136 (27%), Positives = 57/136 (40%), Gaps = 10/136 (7%)
 Frame = +2

Query: 98   RKSPRPGLRRAAGCRLEPVNDSKLGLRSDSRRVPHPQPAQAARSQMRLQRRWCRHCLLLS 277
            ++S R   RR  G    P+   K   RS SR  P P     +R+     RR      L+S
Sbjct: 835  QESSRTSSRRRRGRSRTPLTSRK---RSRSRTSPAPWKRSRSRASPATHRRSRSRTPLIS 891

Query: 278  NTTTVSRTATSTT*STRACARRRAI*TNG*ATSQRQES-------LGS*GRSATRALA-- 430
               + SRT+  +   +R+  RRR+       + +R  S         S  R+ TR  +  
Sbjct: 892  RRRSRSRTSPVSRRRSRSVNRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTRRRSRS 951

Query: 431  -TPTSSQRRPRHASPP 475
             TP  ++RR R  +PP
Sbjct: 952  RTPPVTRRRSRSRTPP 967

>ref|NP_780438.1| RIKEN cDNA 5033413A03 [Mus musculus] gi|26354955|dbj|BAC41104.1|
            unnamed protein product [Mus musculus]
          Length = 2607

 Score = 40.0 bits (92), Expect = 0.017
 Identities = 38/131 (29%), Positives = 56/131 (42%)
 Frame = +2

Query: 83   RGCPSRKSPRPGLRRAAGCRLEPVNDSKLGLRSDSRRVPHPQPAQAARSQMRLQRRWCRH 262
            R  PS  SP P  +  +  R   V+  +    S   R P P+P    RS+ R +R   R 
Sbjct: 1585 RRSPSVSSPEPTEKSRSSRRRRSVSSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTR- 1643

Query: 263  CLLLSNTTTVSRTATSTT*STRACARRRAI*TNG*ATSQRQESLGS*GRSATRALATPTS 442
                   TT  R  + ++ ST    RR+   +    T +R+   G   RS TR  ++ TS
Sbjct: 1644 -------TTRRRDRSGSSQST--SRRRQRSRSRSRVTRRRRGGSGYHSRSPTRQESSRTS 1694

Query: 443  SQRRPRHASPP 475
            S+RR   +  P
Sbjct: 1695 SRRRRGRSRTP 1705

 Score = 33.5 bits (75), Expect = 1.6
 Identities = 38/136 (27%), Positives = 57/136 (40%), Gaps = 10/136 (7%)
 Frame = +2

Query: 98   RKSPRPGLRRAAGCRLEPVNDSKLGLRSDSRRVPHPQPAQAARSQMRLQRRWCRHCLLLS 277
            ++S R   RR  G    P+   K   RS SR  P P     +R+     RR      L+S
Sbjct: 1688 QESSRTSSRRRRGRSRTPLTSRK---RSRSRTSPAPWKRSRSRASPATHRRSRSITPLIS 1744

Query: 278  NTTTVSRTATSTT*STRACARRRAI*TNG*ATSQRQES-------LGS*GRSATRALA-- 430
               + SRT+  +   +R+  RRR+       + +R  S         S  R+ TR  +  
Sbjct: 1745 RRRSRSRTSPVSRRRSRSVNRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTRRRSRS 1804

Query: 431  -TPTSSQRRPRHASPP 475
             TP  ++RR R  +PP
Sbjct: 1805 RTPPVTRRRSRSRTPP 1820

>ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus]
          Length = 2607

 Score = 40.0 bits (92), Expect = 0.017
 Identities = 38/131 (29%), Positives = 56/131 (42%)
 Frame = +2

Query: 83   RGCPSRKSPRPGLRRAAGCRLEPVNDSKLGLRSDSRRVPHPQPAQAARSQMRLQRRWCRH 262
            R  PS  SP P  +  +  R   V+  +    S   R P P+P    RS+ R +R   R 
Sbjct: 1585 RRSPSVSSPEPTEKSRSSRRRRSVSSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTR- 1643

Query: 263  CLLLSNTTTVSRTATSTT*STRACARRRAI*TNG*ATSQRQESLGS*GRSATRALATPTS 442
                   TT  R  + ++ ST    RR+   +    T +R+   G   RS TR  ++ TS
Sbjct: 1644 -------TTRRRDRSGSSQST--SRRRQRSRSRSRVTRRRRGGSGYHSRSPTRQESSRTS 1694

Query: 443  SQRRPRHASPP 475
            S+RR   +  P
Sbjct: 1695 SRRRRGRSRTP 1705

 Score = 34.7 bits (78), Expect = 0.73
 Identities = 38/136 (27%), Positives = 57/136 (40%), Gaps = 10/136 (7%)
 Frame = +2

Query: 98   RKSPRPGLRRAAGCRLEPVNDSKLGLRSDSRRVPHPQPAQAARSQMRLQRRWCRHCLLLS 277
            ++S R   RR  G    P+   K   RS SR  P P     +R+     RR      L+S
Sbjct: 1688 QESSRTSSRRRRGRSRTPLTSRK---RSRSRTSPAPWKRSRSRASPATHRRSRSRTPLIS 1744

Query: 278  NTTTVSRTATSTT*STRACARRRAI*TNG*ATSQRQES-------LGS*GRSATRALA-- 430
               + SRT+  +   +R+  RRR+       + +R  S         S  R+ TR  +  
Sbjct: 1745 RRRSRSRTSPVSRRRSRSVNRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTRRRSRS 1804

Query: 431  -TPTSSQRRPRHASPP 475
             TP  ++RR R  +PP
Sbjct: 1805 RTPPVTRRRSRSRTPP 1820



EST assemble image


clone accession position
1 LCL097a07_r AV631615 1 127
2 HCL083c09_r AV644173 4 513
3 HCL067h12_r AV643344 34 490




Chlamydomonas reinhardtii
Kazusa DNA Research Institute