KCC002604A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002604A_C01 KCC002604A_c01
gaggcaacgtatctcaaaaCCAAAATCGTATACTGTAAGTACCCTGAACCAGCTTCACAA
CGTTTACTCCTTAGACCCTGGGCGTGTTTGTGACACCCTGGGCAGCCGCTGTGACCAGCC
GTTACAATGTCAGGCGTAAGAGCTTGCCTGCAGCCAAATGAGGGCCCGGCGTGCCCTATC
GGCCAAACATACGGAGAAGTTGGGGGGAGCAGTCCCAACTTCAGGGGCAACTTCTGTGAC
GCGGGGCGCAAGCACGTATCCGGCCCAGCATCCGAGCTTGCCACGCAGGGCTTCTCACGC
TGGGAGCAGTCCTCAGGGAACCGCGATCCCCCGCTCAGGCGGCACGCGGAGCAGCCTGCA
TCTACTAGCTATGCGGAGCCGTCTGTGATGGGGGGGCATGCCTCGTACTACGGACGCCGT
GCAGTTGGGGAGGGCGAAGACGGGACAGCGTACCGGCGAACAATGAAAGCAGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002604A_C01 KCC002604A_c01
         (474 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_219314.2| similar to transforming acidic coiled coil 2, l...    38  0.053
ref|NP_441258.1| unknown protein [Synechocystis sp. PCC 6803] gi...    36  0.20
pir||H72579 hypothetical protein APE1920 - Aeropyrum pernix (str...    36  0.26
dbj|BAC57496.1| hornerin [Homo sapiens]                                35  0.45
ref|XP_352327.1| similar to hornerin [Homo sapiens]                    35  0.45

>ref|XP_219314.2| similar to transforming acidic coiled coil 2, long isoform [Rattus
           norvegicus]
          Length = 1761

 Score = 38.1 bits (87), Expect = 0.053
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
 Frame = +2

Query: 182 AKHTEKLGGAVPTSGATSVTRGASTYPAQHPS------LPRRASHAGSSPQGTAIPRSGG 343
           AKH E LGG  P+ G +    GA T PA   S      +P  ++   S PQG    R+ G
Sbjct: 281 AKHVEFLGGCHPSKGNSGANPGAGTSPASQESCQLRVGMPLPSAELPSGPQGLTTARADG 340

>ref|NP_441258.1| unknown protein [Synechocystis sp. PCC 6803] gi|7469873|pir||S75076
           hypothetical protein sll0252 - Synechocystis sp. (strain
           PCC 6803) gi|1653021|dbj|BAA17938.1|
           ORF_ID:sll0252~unknown protein [Synechocystis sp. PCC
           6803]
          Length = 428

 Score = 36.2 bits (82), Expect = 0.20
 Identities = 19/68 (27%), Positives = 36/68 (52%)
 Frame = +2

Query: 152 SQMRARRALSAKHTEKLGGAVPTSGATSVTRGASTYPAQHPSLPRRASHAGSSPQGTAIP 331
           S +++ R ++A++  K   A PT  A +++  A T+PA   S P + ++  S P     P
Sbjct: 107 SGLKSPRPITAENLAKSAPATPTGPAGNISNRAVTFPALGNSAPVQNTNTASVPSAPQSP 166

Query: 332 RSGGTRSS 355
            SG  +++
Sbjct: 167 ASGSPQTA 174

>pir||H72579 hypothetical protein APE1920 - Aeropyrum pernix (strain K1)
           gi|5105612|dbj|BAA80925.1| 167aa long hypothetical
           protein [Aeropyrum pernix]
          Length = 167

 Score = 35.8 bits (81), Expect = 0.26
 Identities = 41/138 (29%), Positives = 48/138 (34%), Gaps = 7/138 (5%)
 Frame = -2

Query: 440 SSPSPT-----ARRP*YEACPPITDGSA*LVDAGCSACRLSGGSRFPEDCSQREKPCVAS 276
           S P+PT       RP +    P   GS     AG   C L   S  PE    R  PC   
Sbjct: 18  SCPAPTEGARACARPRFPGRTPCFQGSG---QAGFCPCTLRRSSDPPEPTFGR--PCYPF 72

Query: 275 SDAGPDTCLRPASQKLPLKLGLLPPTSP--YVWPIGHAGPSFGCRQALTPDIVTAGHSGC 102
           +   P     P +   P   GL P        W   H  P       L P + T      
Sbjct: 73  AGVPPQPNRPPDAVPRPPGAGLGPRAGVGGVSWTPPH--PPERVAHRLPPTLRTPARGPT 130

Query: 101 PGCHKHAQGLRSKRCEAG 48
           PGC K  +GL S R +AG
Sbjct: 131 PGCGKAPRGLLSLRGDAG 148

>dbj|BAC57496.1| hornerin [Homo sapiens]
          Length = 493

 Score = 35.0 bits (79), Expect = 0.45
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
 Frame = +1

Query: 163 GPACPIGQTYGEVGGSSPNFRGNFCDAGRKHVSGPASELATQ--GFSRWEQSSGNRDPPL 336
           G  C  GQ +G   G S  F       G+    G     ++Q  G+ R    SG      
Sbjct: 358 GHFCSQGQ-HGSTSGQSSTFDQEGSSTGQSSSYGHRGSGSSQSSGYGRHGAGSGQSLSHG 416

Query: 337 RRHAEQPASTSYAEPSVMGGHASYYGRRAVGEGEDGTAY 453
           R  +    S+SY +     G +S Y +   G G+DG +Y
Sbjct: 417 RHGSGSGQSSSYGQHGSGSGQSSGYSQHGSGSGQDGYSY 455

>ref|XP_352327.1| similar to hornerin [Homo sapiens]
          Length = 2850

 Score = 35.0 bits (79), Expect = 0.45
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
 Frame = +1

Query: 163  GPACPIGQTYGEVGGSSPNFRGNFCDAGRKHVSGPASELATQ--GFSRWEQSSGNRDPPL 336
            G  C  GQ +G   G S  F       G+    G     ++Q  G+ R    SG      
Sbjct: 2715 GHFCSQGQ-HGSTSGQSSTFDQEGSSTGQSSSYGHRGSGSSQSSGYGRHGAGSGQSLSHG 2773

Query: 337  RRHAEQPASTSYAEPSVMGGHASYYGRRAVGEGEDGTAY 453
            R  +    S+SY +     G +S Y +   G G+DG +Y
Sbjct: 2774 RHGSGSGQSSSYGQHGSGSGQSSGYSQHGSGSGQDGYSY 2812

 Score = 32.0 bits (71), Expect = 3.8
 Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
 Frame = +1

Query: 163  GPACPIGQTYGEVGGSSPNFRGNFCDAGRKHVSGPASELATQGFSRWEQSSGNRDPPLR- 339
            G  C  GQ +G   G S  F       G+    G     ++Q  S  +Q SG+   P R 
Sbjct: 2245 GHFCSQGQ-HGSTSGQSSTFDQEGSSTGQSSSHGQHGSGSSQSSSYGQQGSGSGQSPSRG 2303

Query: 340  RHAEQPASTSYAEPSVMGGHASYYGRRAVGEGEDGTAYR 456
            RH                GH+S YG+   G G   ++ R
Sbjct: 2304 RHGSG------------SGHSSSYGQHGSGSGWSSSSGR 2330

 Score = 32.0 bits (71), Expect = 3.8
 Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
 Frame = +1

Query: 163  GPACPIGQTYGEVGGSSPNFRGNFCDAGRKHVSGPASELATQGFSRWEQSSGNRDPPLR- 339
            G  C  GQ +G   G S  F       G+    G     ++Q  S  +Q SG+   P R 
Sbjct: 1775 GHFCSQGQ-HGSTSGQSSTFDQEGSSTGQSSSHGQHGSGSSQSSSYGQQGSGSGQSPSRG 1833

Query: 340  RHAEQPASTSYAEPSVMGGHASYYGRRAVGEGEDGTAYR 456
            RH                GH+S YG+   G G   ++ R
Sbjct: 1834 RHGSG------------SGHSSSYGQHGSGSGWSSSSGR 1860



EST assemble image


clone accession position
1 HCL067a08_r AV643289 1 474
2 LCL038c03_r AV628200 20 337




Chlamydomonas reinhardtii
Kazusa DNA Research Institute