KCC002600A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002600A_C01 KCC002600A_c01
gaagtcatactgcgcaaagccatggcttgcttttcgggcaacctCGCGAAAGTCAATTGC
ACACCAAAAAAATATGCAAACACATAGCACCTAGCCGGACGCGGCCGGGCCAAAGTTCCT
TATTATCTTCGTGATTTCTGCATAATGGCGGCTGTATTCTACCTGCTCATGTCCACCGCC
ATCGCCTTCTCATCTCACGACACCCGGCATCACCAGACTCGACGCCTCCACAACCACCTT
GGCCACCAGCTCAGCCTTAGTGCCCTGCGCGCAAGTAGCAAACATAAAAAGCAGCTAGCA
TGACACTAAGCAAAACCGATCATGTTAATGCAGCGCTCGACCTATGAATTTCCATGTCGT
ACCATCAGCACCGCCCCAGTCACCGCGCACGCAAGCGCCCGCCCCACACAAACGAGAGCG
CCCTGTCATGGGCCACGCGGCACTGCTCCATCAGnCCAACACCAGCCAGCGTTCCATGCC
CGGCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002600A_C01 KCC002600A_c01
         (485 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00120831.1| hypothetical protein [Bifidobacterium longum ...    40  0.015
ref|NP_508292.1| putative protein family member (XC177) [Caenorh...    39  0.043
gb|AAP82647.1| Hypothetical protein K06A9.1c [Caenorhabditis ele...    39  0.043
ref|NP_508293.1| putative protein family member (XC177) [Caenorh...    39  0.043
emb|CAA71314.1| CRR1 protein [Metarhizium anisopliae]                  37  0.096

>ref|ZP_00120831.1| hypothetical protein [Bifidobacterium longum DJO10A]
          Length = 893

 Score = 40.0 bits (92), Expect = 0.015
 Identities = 39/128 (30%), Positives = 51/128 (39%), Gaps = 2/128 (1%)
 Frame = +3

Query: 39  QPRESQLHTKKICKHIAPSRTRPGQSSLLSS*FLHNGGCILPAHVHRHRLLISRHPASPD 218
           QPR    H +   +H AP+R RPG+                  H HRHR    RH   P 
Sbjct: 270 QPR----HRRAKPRHRAPARPRPGRR-----------------HRHRHR----RHRHGPR 304

Query: 219 STPPQPPWPPAQP*CPARK*QT*KAASMTLSK-TDH-VNAALDL*ISMSYHQHRPSHRAR 392
             PP        P  PAR+  T   AS   S  T H     L +  +   H+H+P+ R  
Sbjct: 305 LRPPPGHAQRRHPHPPARRRPTTTLASRRQSHHTPHRQKRPLRMEPTRRRHRHQPTQRRH 364

Query: 393 KRPPHTNE 416
            RPP  ++
Sbjct: 365 PRPPRGHD 372

>ref|NP_508292.1| putative protein family member (XC177) [Caenorhabditis elegans]
           gi|7505357|pir||T34434 hypothetical protein K06A9.1a -
           Caenorhabditis elegans gi|3834294|gb|AAC70890.1|
           Hypothetical protein K06A9.1b [Caenorhabditis elegans]
          Length = 2232

 Score = 38.5 bits (88), Expect = 0.043
 Identities = 25/84 (29%), Positives = 41/84 (48%)
 Frame = +2

Query: 158 STCSCPPPSPSHLTTPGITRLDASTTTLATSSALVPCAQVANIKSS*HDTKQNRSC*CSA 337
           ST   P  SP+  ++P  T    ST T++ SS+++      +  S    T Q+     +A
Sbjct: 526 STSPAPSSSPNPSSSPAST---GSTITISGSSSIIVSTVSGSTVSGSTGTSQSTLASSTA 582

Query: 338 RPMNFHVVPSAPPQSPRTQAPAPH 409
            P +   VPS+    P +Q+PAP+
Sbjct: 583 TPGSSSTVPSSSSPQPSSQSPAPN 606

>gb|AAP82647.1| Hypothetical protein K06A9.1c [Caenorhabditis elegans]
          Length = 825

 Score = 38.5 bits (88), Expect = 0.043
 Identities = 25/84 (29%), Positives = 41/84 (48%)
 Frame = +2

Query: 158 STCSCPPPSPSHLTTPGITRLDASTTTLATSSALVPCAQVANIKSS*HDTKQNRSC*CSA 337
           ST   P  SP+  ++P  T    ST T++ SS+++      +  S    T Q+     +A
Sbjct: 319 STSPAPSSSPNPSSSPAST---GSTITISGSSSIIVSTVSGSTVSGSTGTSQSTLASSTA 375

Query: 338 RPMNFHVVPSAPPQSPRTQAPAPH 409
            P +   VPS+    P +Q+PAP+
Sbjct: 376 TPGSSSTVPSSSSPQPSSQSPAPN 399

>ref|NP_508293.1| putative protein family member (XC177) [Caenorhabditis elegans]
           gi|7505356|pir||T34433 hypothetical protein K06A9.1a -
           Caenorhabditis elegans gi|3834293|gb|AAC70889.1|
           Hypothetical protein K06A9.1a [Caenorhabditis elegans]
          Length = 1032

 Score = 38.5 bits (88), Expect = 0.043
 Identities = 25/84 (29%), Positives = 41/84 (48%)
 Frame = +2

Query: 158 STCSCPPPSPSHLTTPGITRLDASTTTLATSSALVPCAQVANIKSS*HDTKQNRSC*CSA 337
           ST   P  SP+  ++P  T    ST T++ SS+++      +  S    T Q+     +A
Sbjct: 526 STSPAPSSSPNPSSSPAST---GSTITISGSSSIIVSTVSGSTVSGSTGTSQSTLASSTA 582

Query: 338 RPMNFHVVPSAPPQSPRTQAPAPH 409
            P +   VPS+    P +Q+PAP+
Sbjct: 583 TPGSSSTVPSSSSPQPSSQSPAPN 606

>emb|CAA71314.1| CRR1 protein [Metarhizium anisopliae]
          Length = 411

 Score = 37.4 bits (85), Expect = 0.096
 Identities = 25/92 (27%), Positives = 36/92 (38%), Gaps = 4/92 (4%)
 Frame = +1

Query: 175 TAIAFSSHDTRHHQTRRLHNHLGHQLSLSALRASSKHKKQLA*H*AKPIMLMQRSTYEFP 354
           T  A  SH  RH+    +H+  GH   LS+   +  H  +        +   +RS    P
Sbjct: 215 TLTAPPSHSARHYYGHSMHSSRGHPNGLSSYHMARSHSSEDHDDHYNGMRHAKRSRPNSP 274

Query: 355 CRTISTAPVTAHASARPTQTR----APCHGPR 438
             T  ++P  +H S  PT        P H PR
Sbjct: 275 NSTAPSSPTFSHDSLSPTPDHTPIATPAHSPR 306



EST assemble image


clone accession position
1 LCL016h07_r AV626865 1 254
2 HCL066d04_r AV643250 45 485




Chlamydomonas reinhardtii
Kazusa DNA Research Institute