KCC002598A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002598A_C01 KCC002598A_c01
cggaaatcagcaagcgggagctgcgcagcaacgtgttcgacgtggggagctacaagtggt
acatcctcgtgtatcctcaaGGATGCGACGTGTGCAACCACTTGTCACTGTTCTTATGCG
TGGCGGACTACGACAAGCTGCTGCCGGGCTGGAGCCACTTTGCACAGTTCACGATAGCAG
TAGTCAACAAGGACCCCAAGAAGTCCAAGTACTCAGACACGCTGCACCGGTTCTGCAAGA
AGGAGCACGACTGGGGGTGGAAGAAGTTCATGGAGCTATCAAAGGTGCTGGACGGGTTCA
CCGTGGCGGACACGCTGGTCATCAAGGCGCAGGTGCAGGTCATCCTGGACAAGCCCAGCA
AGCCGTTCCGGTGCCTGGACCCTCAGTACCGCCGCGAGCTCGTGCGCGTGTACCTCACCA
ACGTGGAGGGCATCTGCCGGCGGTTCTGCGACGACAAGAAGGCGCGGCTGAACTGGGTCC
GGGAGGAGGAGGGCGCGTTCCGGCACTTCTGGGGCTCGCTCACGCCGGAGCAGCAGCGCA
AGTACCTGACCGACAAGGGGGAGGTCATCCTCAAGGCGGTGGTGAAGCAGTTCTTCAACG
AGAAGGAGGTGACCTCCACGCTGGTCATGGACGCGCTGTACAGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002598A_C01 KCC002598A_c01
         (645 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC03272.1| P0490D09.24 [Oryza sativa (japonica cultivar-gro...   291  6e-78
ref|NP_199169.1| expressed protein [Arabidopsis thaliana] gi|306...   289  3e-77
dbj|BAB11619.1| gene_id:K9D7.6~unknown protein [Arabidopsis thal...   281  4e-75
ref|NP_171926.2| expressed protein [Arabidopsis thaliana]             250  1e-65
ref|NP_200046.1| expressed protein [Arabidopsis thaliana] gi|101...   240  1e-62

>dbj|BAC03272.1| P0490D09.24 [Oryza sativa (japonica cultivar-group)]
          Length = 1278

 Score =  291 bits (745), Expect = 6e-78
 Identities = 140/214 (65%), Positives = 171/214 (79%), Gaps = 3/214 (1%)
 Frame = +3

Query: 12  KRELRSNVFDVGSYKWYILVYPQGCDVCNHLSLFLCVADYDKLLPGWSHFAQFTIAVVNK 191
           KRE++S  F+ G YKWYILVYPQGCDV NHLSLFLCVA++DKLLPGWSHFAQFTIAV N 
Sbjct: 116 KREMKSEPFEAGGYKWYILVYPQGCDVSNHLSLFLCVANHDKLLPGWSHFAQFTIAVGNL 175

Query: 192 DPKKSKYSDTLHRFCKKEHDWGWKKFMELSKVLDGFTVADTLVIKAQVQVILDKPSKPFR 371
           DPKK KYSDTLH+F KKEHDWGWKKFMELSK+ DGF V D L I AQVQVI +K  +PFR
Sbjct: 176 DPKKVKYSDTLHKFWKKEHDWGWKKFMELSKIQDGFLVDDVLEIIAQVQVIREKVDRPFR 235

Query: 372 CLDPQYRRELVRVYLTNVEGICRRFCDDKKARLNWVREEE---GAFRHFWGSLTPEQQRK 542
           CLD  YRREL+RVY+TN+E I RRF ++++++L  + E++    +FR FW ++    + +
Sbjct: 236 CLDRPYRRELLRVYMTNIEQIYRRFVEERRSKLCKLIEDKMRWSSFRAFWLAIDQSTRHR 295

Query: 543 YLTDKGEVILKAVVKQFFNEKEVTSTLVMDALYS 644
             T+K +VILK +VK FF EKEVTSTLVMD+LY+
Sbjct: 296 MSTEKSDVILKIIVKHFFVEKEVTSTLVMDSLYT 329

>ref|NP_199169.1| expressed protein [Arabidopsis thaliana]
           gi|30694322|ref|NP_851125.1| expressed protein
           [Arabidopsis thaliana] gi|19310439|gb|AAL84956.1|
           AT5g43560/K9D7_6 [Arabidopsis thaliana]
          Length = 1055

 Score =  289 bits (739), Expect = 3e-77
 Identities = 143/218 (65%), Positives = 173/218 (78%), Gaps = 4/218 (1%)
 Frame = +3

Query: 3   EISKRELRSNVFDVGSYKWYILVYPQGCDVCNHLSLFLCVADYDKLLPGWSHFAQFTIAV 182
           +I+KRELR +VF+VG YKWYIL+YPQGCDVCNHLSLFLCVA ++KLLPGWSHFAQFTIAV
Sbjct: 80  DINKRELRGDVFEVGGYKWYILIYPQGCDVCNHLSLFLCVAHHEKLLPGWSHFAQFTIAV 139

Query: 183 VNKDPKKSKYSDTLHRFCKKEHDWGWKKFMELSKVLDGF-TVADTLVIKAQVQVILDKPS 359
            NKDPKKSK+SDTLHRF KKEHDWGWKKF+EL K+ +GF   +  L IKAQVQVI ++  
Sbjct: 140 SNKDPKKSKHSDTLHRFWKKEHDWGWKKFIELPKLKEGFIDDSGCLTIKAQVQVIRERVD 199

Query: 360 KPFRCLDPQYRRELVRVYLTNVEGICRRFCDDKKARLNWVREEEG---AFRHFWGSLTPE 530
           +PFRCL  +YR ELVRVYL NVE IC RF ++K+++L  + E++    +F  FW  L   
Sbjct: 200 RPFRCLHYKYREELVRVYLGNVEQICWRFVEEKRSKLGRLIEDKAKWKSFCAFWMGLDQN 259

Query: 531 QQRKYLTDKGEVILKAVVKQFFNEKEVTSTLVMDALYS 644
            +R+   +K +VILK VVK FF EKEVTSTLVMD+LYS
Sbjct: 260 SRRRMSREKMDVILKIVVKHFFVEKEVTSTLVMDSLYS 297

>dbj|BAB11619.1| gene_id:K9D7.6~unknown protein [Arabidopsis thaliana]
          Length = 1063

 Score =  281 bits (720), Expect = 4e-75
 Identities = 143/226 (63%), Positives = 173/226 (76%), Gaps = 12/226 (5%)
 Frame = +3

Query: 3   EISKRELRSNVFDVGSYKWYILVYPQGCDVCNHLSLFLCVADYDKLLPG--------WSH 158
           +I+KRELR +VF+VG YKWYIL+YPQGCDVCNHLSLFLCVA ++KLLPG        WSH
Sbjct: 80  DINKRELRGDVFEVGGYKWYILIYPQGCDVCNHLSLFLCVAHHEKLLPGEYIIFETGWSH 139

Query: 159 FAQFTIAVVNKDPKKSKYSDTLHRFCKKEHDWGWKKFMELSKVLDGF-TVADTLVIKAQV 335
           FAQFTIAV NKDPKKSK+SDTLHRF KKEHDWGWKKF+EL K+ +GF   +  L IKAQV
Sbjct: 140 FAQFTIAVSNKDPKKSKHSDTLHRFWKKEHDWGWKKFIELPKLKEGFIDDSGCLTIKAQV 199

Query: 336 QVILDKPSKPFRCLDPQYRRELVRVYLTNVEGICRRFCDDKKARLNWVREEEG---AFRH 506
           QVI ++  +PFRCL  +YR ELVRVYL NVE IC RF ++K+++L  + E++    +F  
Sbjct: 200 QVIRERVDRPFRCLHYKYREELVRVYLGNVEQICWRFVEEKRSKLGRLIEDKAKWKSFCA 259

Query: 507 FWGSLTPEQQRKYLTDKGEVILKAVVKQFFNEKEVTSTLVMDALYS 644
           FW  L    +R+   +K +VILK VVK FF EKEVTSTLVMD+LYS
Sbjct: 260 FWMGLDQNSRRRMSREKMDVILKIVVKHFFVEKEVTSTLVMDSLYS 305

>ref|NP_171926.2| expressed protein [Arabidopsis thaliana]
          Length = 1052

 Score =  250 bits (638), Expect = 1e-65
 Identities = 127/207 (61%), Positives = 157/207 (75%), Gaps = 12/207 (5%)
 Frame = +3

Query: 60  YILVYPQGCDVCNHLSLFLCVADYDKLLPG--------WSHFAQFTIAVVNKDPKKSKYS 215
           YIL+YPQGCDVCNHLSLFLCVA+YDKLLPG        WS FAQFTI+V+++D KKSK+S
Sbjct: 68  YILIYPQGCDVCNHLSLFLCVANYDKLLPGSFAILEAGWSQFAQFTISVLSQDLKKSKFS 127

Query: 216 DTLHRFCKKEHDWGWKKFMELSKVLDGF-TVADTLVIKAQVQVILDKPSKPFRCLDPQYR 392
           DTLHRF KKEHDWGWKKFMEL K+ DGF   +  L I+A+VQVI ++  +PFRCLD  YR
Sbjct: 128 DTLHRFWKKEHDWGWKKFMELPKLKDGFIDESGCLTIEAKVQVIRERVDRPFRCLDCGYR 187

Query: 393 RELVRVYLTNVEGICRRFCDDKKARLNWVREEEG---AFRHFWGSLTPEQQRKYLTDKGE 563
           RELVRVY  NVE ICRRF ++K+++L  + E++    +F  FW  +    +R+   +K +
Sbjct: 188 RELVRVYFQNVEQICRRFVEEKRSKLGRLIEDKARWTSFGVFWLGMDQNSRRRMCREKVD 247

Query: 564 VILKAVVKQFFNEKEVTSTLVMDALYS 644
           VILK VVK FF EKEV+STLVMD+LYS
Sbjct: 248 VILKGVVKHFFVEKEVSSTLVMDSLYS 274

>ref|NP_200046.1| expressed protein [Arabidopsis thaliana]
           gi|10177399|dbj|BAB10530.1| contains similarity to
           unknown protein~gb|AAB70446.1~gene_id:K24M7.6
           [Arabidopsis thaliana]
          Length = 397

 Score =  240 bits (612), Expect = 1e-62
 Identities = 119/218 (54%), Positives = 159/218 (72%), Gaps = 4/218 (1%)
 Frame = +3

Query: 3   EISKRELRSNVFDVGSYKWYILVYPQGCDVCNHLSLFLCVADYDKLLPGWSHFAQFTIAV 182
           +ISKRE  S+VF++G Y W+IL+YP+GCDV NHLSLFLCVA++D+LLPGWS  AQFTI+V
Sbjct: 30  QISKREFASSVFEIGGYSWHILMYPEGCDVSNHLSLFLCVANHDELLPGWSQLAQFTISV 89

Query: 183 VNKDPKKSKYSDTLHRFCKKEHDWGWKKFMELSKVLDGF-TVADTLVIKAQVQVILDKPS 359
           ++KDPKKSK+SDTLHRF KKEHDWGWKKFMEL K+ DGF   +  L I+ +VQVI D+  
Sbjct: 90  MHKDPKKSKFSDTLHRFWKKEHDWGWKKFMELPKLRDGFIDDSGCLTIETKVQVIRDRVD 149

Query: 360 KPFRCLDPQYRRELVRVYLTNVEGICRRFCDDKKARLNWVREEEG---AFRHFWGSLTPE 530
           +PF  LD  Y+ E+VRVY  N+E I  RF ++++++L  + E++    +F  FW  +   
Sbjct: 150 RPF-FLDYGYKTEIVRVYFRNIEQIFLRFVEERRSKLEKLIEDKAKWTSFGVFWLGMDKN 208

Query: 531 QQRKYLTDKGEVILKAVVKQFFNEKEVTSTLVMDALYS 644
            +R+   +K +VILK  VK FF E  VTS + MD LY+
Sbjct: 209 SRREMSREKMDVILKGFVKHFFMENVVTSPIAMDCLYN 246



EST assemble image


clone accession position
1 HCL065g11_r AV643219 1 492
2 LCL070g07_r AV630002 248 645




Chlamydomonas reinhardtii
Kazusa DNA Research Institute