KCC002592A_c02
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002592A_C02 KCC002592A_c02
gtacaacgtcccaattattataatcgggcttctgataacgacctttcggccgcttgtgca
gctgcaacaccttccactcgGTCCGCTCGAGTTGGGGATGAAAGCTCTGAACTTCCGTTA
GGGTTGATATAATGCTGAGAGTCAACAATGGCGTGCTAGTCGTGCCTCCGTTCGAGGCTG
CGTGGCTCACTGGCGATGTGTTTCACACTGCGGAATGGCACCGGCTGCATGTCGTTTGAG
GCAAAGGGTGAAACAGATGTCACAGACATTCTCAAGTCCACGCCTGGGGCAAAGCGACTG
CAGCCATTGCTGCGACAGACCGCAACTGCTGCCAGTGGGGCCGGGCACAGCGGGGGCAAC
GCGCTGCAGGTGGAGGAGAACTACACAATCATCTTCGGAAGCCACCGGAACAGCTGCCTC
AAAATCGAGAAGAACGGCGTGACGCAGTGCATGGTGGGCGGCGTGCCCTGCTCGCGGGTC
AGCGGCAAGGTGTTCAGCAAGTTCTGGATTGACCTCAACCATGGGGTGCTCACTGTTGGG
CACGGCGAGCCAGTGCAGGGCGTGTACCACCAATGGCGCGACGCGCAGGAAATTCCCGGC
ATTCAGCACATTGGACTGAGCTGCTGGGACCGACACGTGTCGTACCGCTCCATTGCGCTG
CACGCGCCGCTTGACTTCTCTCGCCTGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002592A_C02 KCC002592A_c02
         (689 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_180618.2| POZ domain protein family [Arabidopsis thaliana...    73  2e-12
pir||D84710 hypothetical protein At2g30600 [imported] - Arabidop...    73  2e-12
ref|XP_311331.1| ENSANGP00000001657 [Anopheles gambiae] gi|30177...    44  0.002
ref|ZP_00089904.1| COG1674: DNA segregation ATPase FtsK/SpoIIIE ...    44  0.002
emb|CAE12049.1| putative transposase [Magnetospirillum gryphiswa...    42  0.009

>ref|NP_180618.2| POZ domain protein family [Arabidopsis thaliana]
           gi|30684657|ref|NP_850151.1| POZ domain protein family
           [Arabidopsis thaliana] gi|21553356|gb|AAM62449.1|
           unknown [Arabidopsis thaliana]
          Length = 809

 Score = 73.2 bits (178), Expect(2) = 2e-12
 Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 1/149 (0%)
 Frame = +1

Query: 217 GTGCMSFEAKGETDVTDILKSTPGAKRLQPLLRQTATAASGAGHSGGNALQVEENYTIIF 396
           G GC++F+A    DVT + +   G +                 +   N+     +Y +I 
Sbjct: 29  GRGCVAFDAFAHNDVTVVFRENVGTQHYH--------------YKKDNS----PHYIVII 70

Query: 397 GSHRNSCLKIEKNGVTQCMVGGVPCSRVSGKVFSKFWIDLNHGVLTVGHGE-PVQGVYHQ 573
           GS+RN  LKI+ +G +          R S + F  +WI +  G++++G G  P Q +  +
Sbjct: 71  GSNRNRRLKIQVDGKSVVDEEASDLCRCSLE-FQSYWISIYDGLISIGKGRYPFQNLVFK 129

Query: 574 WRDAQEIPGIQHIGLSCWDRHVSYRSIAL 660
           W+D +    +Q++GLS WD+HV YR++++
Sbjct: 130 WQDPKPNCNVQYVGLSSWDKHVGYRNVSV 158

 Score = 21.2 bits (43), Expect(2) = 2e-12
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 147 NGVLVVPPFEAAW 185
           N  L V PFE AW
Sbjct: 7   NKFLTVAPFECAW 19

>pir||D84710 hypothetical protein At2g30600 [imported] - Arabidopsis thaliana
           gi|1946359|gb|AAB63077.1| unknown protein [Arabidopsis
           thaliana]
          Length = 586

 Score = 73.2 bits (178), Expect(2) = 2e-12
 Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 1/149 (0%)
 Frame = +1

Query: 217 GTGCMSFEAKGETDVTDILKSTPGAKRLQPLLRQTATAASGAGHSGGNALQVEENYTIIF 396
           G GC++F+A    DVT + +   G +                 +   N+     +Y +I 
Sbjct: 29  GRGCVAFDAFAHNDVTVVFRENVGTQHYH--------------YKKDNS----PHYIVII 70

Query: 397 GSHRNSCLKIEKNGVTQCMVGGVPCSRVSGKVFSKFWIDLNHGVLTVGHGE-PVQGVYHQ 573
           GS+RN  LKI+ +G +          R S + F  +WI +  G++++G G  P Q +  +
Sbjct: 71  GSNRNRRLKIQVDGKSVVDEEASDLCRCSLE-FQSYWISIYDGLISIGKGRYPFQNLVFK 129

Query: 574 WRDAQEIPGIQHIGLSCWDRHVSYRSIAL 660
           W+D +    +Q++GLS WD+HV YR++++
Sbjct: 130 WQDPKPNCNVQYVGLSSWDKHVGYRNVSV 158

 Score = 21.2 bits (43), Expect(2) = 2e-12
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 147 NGVLVVPPFEAAW 185
           N  L V PFE AW
Sbjct: 7   NKFLTVAPFECAW 19

>ref|XP_311331.1| ENSANGP00000001657 [Anopheles gambiae] gi|30177813|gb|EAA06779.2|
           ENSANGP00000001657 [Anopheles gambiae str. PEST]
          Length = 283

 Score = 44.3 bits (103), Expect = 0.002
 Identities = 43/178 (24%), Positives = 77/178 (43%)
 Frame = +2

Query: 155 ASRASVRGCVAHWRCVSHCGMAPAACRLRQRVKQMSQTFSSPRLGQSDCSHCCDRPQLLP 334
           ++ +S  G      C + C    ++C         S + SS   G + CS C        
Sbjct: 2   SASSSSSGATTSSCCTTSCSSGTSSC---------SSSTSSGSSGTTSCSSC-------- 44

Query: 335 VGPGTAGATRCRWRRTTQSSSEATGTAASKSRRTA*RSAWWAACPARGSAARCSASSGLT 514
               ++G + C    ++ +SS ++GT +  S  ++  S     C +  S+   S SS  T
Sbjct: 45  TSSCSSGTSSC----SSATSSCSSGTTSCTSSTSSSNS-----CTSSCSSGTSSRSSSTT 95

Query: 515 STMGCSLLGTASQCRACTTNGATRRKFPAFSTLD*AAGTDTCRTAPLRCTRRLTSLAC 688
           S+      GT+S C + TT+ ++     + ST   ++GT +CR+    C+   TS +C
Sbjct: 96  SSSS----GTSS-CSSGTTSSSSCASSCSSSTSSCSSGTSSCRSGTSSCSSCTTSCSC 148

 Score = 35.8 bits (81), Expect = 0.63
 Identities = 35/171 (20%), Positives = 58/171 (33%)
 Frame = +2

Query: 176 GCVAHWRCVSHCGMAPAACRLRQRVKQMSQTFSSPRLGQSDCSHCCDRPQLLPVGPGTAG 355
           G  +   C S C  + ++C         S   SS R G S CS C            T  
Sbjct: 107 GTTSSSSCASSCSSSTSSC---------SSGTSSCRSGTSSCSSC------------TTS 145

Query: 356 ATRCRWRRTTQSSSEATGTAASKSRRTA*RSAWWAACPARGSAARCSASSGLTSTMGCSL 535
            + C     T S S    + +S              C +  S   CS  +  +S+   S 
Sbjct: 146 CSCC-----TSSCSSCASSCSS--------------CASSSSTTSCSCCASSSSSCASSC 186

Query: 536 LGTASQCRACTTNGATRRKFPAFSTLD*AAGTDTCRTAPLRCTRRLTSLAC 688
              AS C +C ++ ++     +      ++ T +  +    C+   TS +C
Sbjct: 187 SSCASSCSSCASSCSSGTTSSSSCASSCSSSTSSSSSGTTSCSSGTTSSSC 237

>ref|ZP_00089904.1| COG1674: DNA segregation ATPase FtsK/SpoIIIE and related proteins
           [Azotobacter vinelandii]
          Length = 1336

 Score = 44.3 bits (103), Expect = 0.002
 Identities = 47/135 (34%), Positives = 54/135 (39%), Gaps = 18/135 (13%)
 Frame = -2

Query: 688 AGERSQAARAAQWSGTTRVGPSSSVQCAECREFPARRAIGGTRPAL---------ARRAQ 536
           AG +    R    SGT R GP S       R    RRA   TRP+          ARR Q
Sbjct: 114 AGLQLDGVRRHPGSGTRRAGPPSR------RLTRQRRAAAKTRPSQPGPVTPWVRARRRQ 167

Query: 535 Q*APHG*GQS--RTC*TPCR*PASRARRPPCTASRRSSRF*GSCSGGFRR*LCSSPPP-- 368
           +  P G G S  R    P R P +RAR    + S   +   G   G +RR   SSPPP  
Sbjct: 168 RYRPRGSGGSPHRPAPVPARRPPARARTGSRSPSPPPA---GRSPGAWRRTARSSPPPRP 224

Query: 367 -----AARCPRCARP 338
                  RCP  A P
Sbjct: 225 CRASVGLRCPSAAGP 239

>emb|CAE12049.1| putative transposase [Magnetospirillum gryphiswaldense]
          Length = 104

 Score = 42.0 bits (97), Expect = 0.009
 Identities = 32/83 (38%), Positives = 38/83 (45%)
 Frame = +3

Query: 366 AGGGELHNHLRKPPEQLPQNREERRDAVHGGRRALLAGQRQGVQQVLD*PQPWGAHCWAR 545
           A GGE  +HL + P + P     RR    GGRRA    +R  + Q    P P  A  W R
Sbjct: 2   AAGGEGRSHLNRAPAR-PAGLVHRR----GGRRA----RRPNIGQCRSCPWPEPAR-WCR 51

Query: 546 RASAGRVPPMARRAGNSRHSAHW 614
           R +A R      R G S H AHW
Sbjct: 52  RRAAVRRRRHGPRCGGSAHRAHW 74



EST assemble image


clone accession position
1 HCL073b11_r AV643637 1 452
2 HCL065b10_r AV643183 163 689




Chlamydomonas reinhardtii
Kazusa DNA Research Institute