KCC002590A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002590A_C01 KCC002590A_c01
tgaaggacaccagtgagccccgacgacgtaagccagtcgtgtccaagcaagcaattccct
cgttcaccgacagtcCCACCACCAACGTGAATTGTGAACATGGCTCCATAGCTTGCAAGC
TATTAGCATGCTTCCTGCATTCTCCAAGTGCCTCTTGGGCTCGTGGGGTTTGCGAGCCAC
GCCAGCCATTGCTCGGCCTCTCTACACTGCGGGCCTGCCTGAGCGTGCCTCAAACTCTTC
TAGCAATGAAGCTACAAGCAGCCCGGGTCTAGACTATCGTCAACTCCTCGCTGCGAATAC
TCGAGGTGTTGCCTTGCCGTCCATCGCGAGGACCTGGGACCTCGCAACGGTGGACTCGGA
GCTGCGACATGCGACTGCGACGCAATTGGGCAGCGCCGCAAACGGGAAGGACGTCCCGAG
TGCCGTCCAGCGCGAGCTCGCCAGGCGCCACGGCATACAGCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002590A_C01 KCC002590A_c01
         (462 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC11168.1| unnamed protein product [Homo sapiens]                 36  0.18
ref|NP_116231.1| hypothetical protein FLJ14803 [Homo sapiens] gi...    36  0.18
gb|AAH57784.1| Unknown (protein for MGC:71603) [Homo sapiens]          36  0.18
dbj|BAB55289.1| unnamed protein product [Homo sapiens]                 36  0.18
emb|CAD39850.1| OSJNBb0072N21.20 [Oryza sativa (japonica cultiva...    34  0.91

>dbj|BAC11168.1| unnamed protein product [Homo sapiens]
          Length = 561

 Score = 36.2 bits (82), Expect = 0.18
 Identities = 30/91 (32%), Positives = 41/91 (44%)
 Frame = +3

Query: 180 RQPLLGLSTLRACLSVPQTLLAMKLQAARV*TIVNSSLRILEVLPCRPSRGPGTSQRWTR 359
           +Q LLGL T     + P  L A ++  A      + S++   VL   PSR P TS ++T 
Sbjct: 101 QQTLLGLKTAVVQTTPPHDLAATQIPPAPP----SPSIQGQSVLSYSPSRSPSTSPKFTT 156

Query: 360 SCDMRLRRNWAAPQTGRTSRVPSSASSPGAT 452
           SC         +PQ    S   S + SPG T
Sbjct: 157 SC-----MTGYSPQLQGLSSGGSGSYSPGVT 182

>ref|NP_116231.1| hypothetical protein FLJ14803 [Homo sapiens]
           gi|14042592|dbj|BAB55314.1| unnamed protein product
           [Homo sapiens]
          Length = 561

 Score = 36.2 bits (82), Expect = 0.18
 Identities = 30/91 (32%), Positives = 41/91 (44%)
 Frame = +3

Query: 180 RQPLLGLSTLRACLSVPQTLLAMKLQAARV*TIVNSSLRILEVLPCRPSRGPGTSQRWTR 359
           +Q LLGL T     + P  L A ++  A      + S++   VL   PSR P TS ++T 
Sbjct: 101 QQTLLGLKTAVVQTTPPHDLAATQIPPAPP----SPSIQGQSVLSYSPSRSPSTSPKFTT 156

Query: 360 SCDMRLRRNWAAPQTGRTSRVPSSASSPGAT 452
           SC         +PQ    S   S + SPG T
Sbjct: 157 SC-----MTGYSPQLQGLSSGGSGSYSPGVT 182

>gb|AAH57784.1| Unknown (protein for MGC:71603) [Homo sapiens]
          Length = 519

 Score = 36.2 bits (82), Expect = 0.18
 Identities = 30/91 (32%), Positives = 41/91 (44%)
 Frame = +3

Query: 180 RQPLLGLSTLRACLSVPQTLLAMKLQAARV*TIVNSSLRILEVLPCRPSRGPGTSQRWTR 359
           +Q LLGL T     + P  L A ++  A      + S++   VL   PSR P TS ++T 
Sbjct: 101 QQTLLGLKTAVVQTTPPHDLAATQIPPAPP----SPSIQGQSVLSYSPSRSPSTSPKFTT 156

Query: 360 SCDMRLRRNWAAPQTGRTSRVPSSASSPGAT 452
           SC         +PQ    S   S + SPG T
Sbjct: 157 SC-----MTGYSPQLQGLSSGGSGSYSPGVT 182

>dbj|BAB55289.1| unnamed protein product [Homo sapiens]
          Length = 203

 Score = 36.2 bits (82), Expect = 0.18
 Identities = 30/91 (32%), Positives = 41/91 (44%)
 Frame = +3

Query: 180 RQPLLGLSTLRACLSVPQTLLAMKLQAARV*TIVNSSLRILEVLPCRPSRGPGTSQRWTR 359
           +Q LLGL T     + P  L A ++  A      + S++   VL   PSR P TS ++T 
Sbjct: 101 QQTLLGLKTAVVQTTPPHDLAATQIPPAPP----SPSIQGQSVLSYSPSRSPSTSPKFTT 156

Query: 360 SCDMRLRRNWAAPQTGRTSRVPSSASSPGAT 452
           SC         +PQ    S   S + SPG T
Sbjct: 157 SC-----MTGYSPQLQGLSSGGSGSYSPGVT 182

>emb|CAD39850.1| OSJNBb0072N21.20 [Oryza sativa (japonica cultivar-group)]
           gi|32492085|emb|CAE05409.1| OSJNBa0036B17.3 [Oryza
           sativa (japonica cultivar-group)]
          Length = 1070

 Score = 33.9 bits (76), Expect = 0.91
 Identities = 31/99 (31%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
 Frame = -2

Query: 449 GAWRARAGRHSGRPSRLRRCPI----ASQSHVAAPSPPLRGPRSSRWTARQHLEYSQRGV 282
           G  R    R  G P+  RR P+    +++S  +A  PP  G RS R  AR HL+Y   G 
Sbjct: 25  GESRGPRHRRHGSPTPPRREPLQRENSARSSGSALPPPPGGERSRRVGARHHLDYGDGGS 84

Query: 281 DDSLDPGCL*LHC*KSLRHAQAGPQCR-EAEQWLAWLAN 168
                     L     LRH    P+      +WL  +AN
Sbjct: 85  PQGALQAASAL-----LRHPPVSPEPETPVRRWLDDVAN 118



EST assemble image


clone accession position
1 HCL064h07_r AV643165 1 462
2 LCL036b01_r AV628059 76 411




Chlamydomonas reinhardtii
Kazusa DNA Research Institute