KCC002587A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002587A_C01 KCC002587A_c01
cgacacaaacggatttacggacactgtatgtgGCTCATTTCATCACACTCTGTAAGATGA
TAATGCACCACCTTTCACGTGCGCATGCGTGTTAACCTTGAGGTAGCCGCTTAATACAGC
GGTCTTATACCGCTCGCATGTCGCAACAATCCATGTGTGATGTGTCCAATCAATAGTGCT
TGGCCAGGGGTGCCCCTGTGCTTGGTACTCCCGTGGACGTCCCTCCGGCCTCCGCAAAAT
TTACAATCCTCCACCTGCAGCCGCCATCCGAGCCGCCATTCGCGCTGCCAGCCGCTCCTT
TGCTGTCATGCCCTTGGCCACAGGCTCTCCTGCCGCGGCCCCGTCAGCTGTTGGTGCCGC
ACTTGCCTCAGGGCGCCTACCGCTGCCTGCCTCCGCTGCTGCAGCTGGCCTGGCTACCCG
GGCCATGCCCCCAGCAGGCAAGTCCTCGTCGCTGTCTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002587A_C01 KCC002587A_c01
         (458 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_104883.1| unknown protein [Mesorhizobium loti] gi|1402406...    48  6e-05
ref|NP_079696.1| small proline rich-like 10 [Mus musculus] gi|12...    41  0.007
ref|XP_346988.1| protein tyrosine phosphatase, receptor type, F ...    40  0.012
gb|AAK63051.1|AF340011_1 spore wall protein-1 [Encephalitozoon c...    40  0.016
gb|AAM96980.1| putative protein [Arabidopsis thaliana] gi|280597...    40  0.016

>ref|NP_104883.1| unknown protein [Mesorhizobium loti] gi|14024064|dbj|BAB50669.1|
           unknown protein [Mesorhizobium loti]
          Length = 575

 Score = 47.8 bits (112), Expect = 6e-05
 Identities = 33/74 (44%), Positives = 38/74 (50%), Gaps = 1/74 (1%)
 Frame = +2

Query: 221 PSGLRKIYNPPPAAAIRAAIRAASRSFAVMPLATGSPAAAPSAVGAALASGRLPLPASAA 400
           PS      NPPPAAA  AA+ AA+   A  P A  +PAA P A G   A+     PA+AA
Sbjct: 308 PSATNAPANPPPAAAAPAAVPAAAAPAATAPAAGAAPAAPPPANGTTPAA-----PANAA 362

Query: 401 AAGLATRAMP-PAG 439
           A      A P PAG
Sbjct: 363 ATPAPAGATPAPAG 376

>ref|NP_079696.1| small proline rich-like 10 [Mus musculus]
           gi|12834728|dbj|BAB23021.1| unnamed protein product [Mus
           musculus] gi|12835458|dbj|BAB23260.1| unnamed protein
           product [Mus musculus] gi|12859776|dbj|BAB31774.1|
           unnamed protein product [Mus musculus]
          Length = 182

 Score = 40.8 bits (94), Expect = 0.007
 Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
 Frame = -2

Query: 445 GLACWGHGPGSQASCSSGGRQR*AP*GK------CGTNS*RGRGRRACGQGHDSKGAAGS 284
           G +C G   GS    SSGG    +  G       CG++     G   CG         GS
Sbjct: 76  GSSCCGSSGGSSCCGSSGGSSGGSSGGSSGGSSCCGSSGGSSGGSSCCGSSSGGSSCCGS 135

Query: 283 ANGGSDGGCRWRIVNFAEAGGTSTGVPS 200
           ++GGS GG          +GG+S G  S
Sbjct: 136 SSGGSSGGSSGGSSCCGSSGGSSGGSSS 163

 Score = 31.6 bits (70), Expect = 4.4
 Identities = 24/74 (32%), Positives = 34/74 (45%)
 Frame = -2

Query: 415 SQASCSSGGRQR*AP*GKCGTNS*RGRGRRACGQGHDSKGAAGSANGGSDGGCRWRIVNF 236
           S   CSSGG         CG++     G   CG    S G++G ++GGS GG      + 
Sbjct: 68  SSGCCSSGGSSC------CGSSG----GSSCCGS---SGGSSGGSSGGSSGGSSCCGSSG 114

Query: 235 AEAGGTSTGVPSTG 194
             +GG+S    S+G
Sbjct: 115 GSSGGSSCCGSSSG 128

>ref|XP_346988.1| protein tyrosine phosphatase, receptor type, F [Rattus norvegicus]
          Length = 197

 Score = 40.0 bits (92), Expect = 0.012
 Identities = 25/67 (37%), Positives = 34/67 (50%)
 Frame = +2

Query: 251 PPAAAIRAAIRAASRSFAVMPLATGSPAAAPSAVGAALASGRLPLPASAAAAGLATRAMP 430
           P   A  AA  AA+ + A    ATG+ A   +A GAA A+      A+AAAAG A  A  
Sbjct: 17  PAGTAAAAAAAAAAAAAAAAAAATGAAATTAAAAGAAAAAAAATTAAAAAAAGAAATAGA 76

Query: 431 PAGKSSS 451
            A  +++
Sbjct: 77  AAAAAAA 83

 Score = 39.7 bits (91), Expect = 0.016
 Identities = 27/62 (43%), Positives = 29/62 (46%)
 Frame = -3

Query: 435 AGGMARVARPAAAAEAGSGRRPEASAAPTADGAAAGEPVAKGMTAKERLAARMAARMAAA 256
           A   A     AAAA AG+     A+AA  A GAAA    A G  A    AA  AA  AAA
Sbjct: 53  AAAAAAATTAAAAAAAGAAATAGAAAAAAAAGAAATAAAAAGAAATAEAAAGAAAAAAAA 112

Query: 255 GG 250
            G
Sbjct: 113 AG 114

 Score = 37.7 bits (86), Expect = 0.062
 Identities = 28/71 (39%), Positives = 37/71 (51%), Gaps = 6/71 (8%)
 Frame = +2

Query: 257 AAAIRAAIRAASRSFAVMPLATGSPAAAPSAVGAALA------SGRLPLPASAAAAGLAT 418
           AAA  AA  AA+ + A    A G+ +AA +A GAA A      +      A+AAAA  A 
Sbjct: 125 AAAAAAAAAAAAGATATAAAAAGAASAAAAAAGAAEAPAAAAGAAAAAAAAAAAAAAAAA 184

Query: 419 RAMPPAGKSSS 451
            A  PAG +S+
Sbjct: 185 TAAVPAGAASA 195

 Score = 37.0 bits (84), Expect = 0.10
 Identities = 26/65 (40%), Positives = 35/65 (53%)
 Frame = +2

Query: 257 AAAIRAAIRAASRSFAVMPLATGSPAAAPSAVGAALASGRLPLPASAAAAGLATRAMPPA 436
           AAA  AA   A+ + A    A  + AAA +A GAA  +G     A+AAAAG A  A   A
Sbjct: 37  AAATGAAATTAAAAGAAAAAAAATTAAAAAAAGAAATAG---AAAAAAAAGAAATAAAAA 93

Query: 437 GKSSS 451
           G +++
Sbjct: 94  GAAAT 98

 Score = 36.2 bits (82), Expect = 0.18
 Identities = 25/61 (40%), Positives = 27/61 (43%)
 Frame = -3

Query: 438 PAGGMARVARPAAAAEAGSGRRPEASAAPTADGAAAGEPVAKGMTAKERLAARMAARMAA 259
           PAG  A  A  AAAA A +      +AA TA  A A    A   TA    AA  AA   A
Sbjct: 17  PAGTAAAAAAAAAAAAAAAAAAATGAAATTAAAAGAAAAAAAATTAAAAAAAGAAATAGA 76

Query: 258 A 256
           A
Sbjct: 77  A 77

 Score = 35.4 bits (80), Expect = 0.31
 Identities = 24/55 (43%), Positives = 27/55 (48%)
 Frame = -3

Query: 414 ARPAAAAEAGSGRRPEASAAPTADGAAAGEPVAKGMTAKERLAARMAARMAAAGG 250
           A  AAAA A +G    + AA  A  AAA    A G TA    AA  A+  AAA G
Sbjct: 103 AGAAAAAAAAAGAAEASEAAAGAAAAAAAAAAAAGATATAAAAAGAASAAAAAAG 157

 Score = 35.4 bits (80), Expect = 0.31
 Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = +2

Query: 257 AAAIRAAIRAASRSFAVMPLATGSPAAAPSAVGAALAS-----GRLPLPASAAAAGLATR 421
           AA   A   AA+ + A    A G+ AAA +A GAA AS           A+AAAAG    
Sbjct: 82  AAGAAATAAAAAGAAATAEAAAGAAAAAAAAAGAAEASEAAAGAAAAAAAAAAAAGATAT 141

Query: 422 AMPPAGKSSS 451
           A   AG +S+
Sbjct: 142 AAAAAGAASA 151

 Score = 33.9 bits (76), Expect = 0.89
 Identities = 24/60 (40%), Positives = 27/60 (45%)
 Frame = -3

Query: 435 AGGMARVARPAAAAEAGSGRRPEASAAPTADGAAAGEPVAKGMTAKERLAARMAARMAAA 256
           A G A  A  AAAA   +     A+ A +A  AAAG   A    A    AA  AA  AAA
Sbjct: 122 AAGAAAAAAAAAAAAGATATAAAAAGAASAAAAAAGAAEAPAAAAGAAAAAAAAAAAAAA 181

 Score = 33.9 bits (76), Expect = 0.89
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +2

Query: 257 AAAIRAAIRAASRSFAVMPLATGSPAAAPSAVGAALASGRLPLPA-SAAAAGLATRAMPP 433
           AA   AA  AA+ + A    A  S AAA +A  AA A+      A +AAAAG A+ A   
Sbjct: 96  AATAEAAAGAAAAAAAAAGAAEASEAAAGAAAAAAAAAAAAGATATAAAAAGAASAAAAA 155

Query: 434 AGKSSS 451
           AG + +
Sbjct: 156 AGAAEA 161

 Score = 33.5 bits (75), Expect = 1.2
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +2

Query: 257 AAAIRAAIRAASRSFAVMPLATGSPAAAPSAVGAALASGRLPLPASA-AAAGLATRAMPP 433
           AAA  AA  AA+ + A      G+ AAA +A  AA A+      A+A AAAG A  A   
Sbjct: 53  AAAAAAATTAAAAAAAGAAATAGAAAAAAAAGAAATAAAAAGAAATAEAAAGAAAAAAAA 112

Query: 434 AGKSSS 451
           AG + +
Sbjct: 113 AGAAEA 118

 Score = 33.1 bits (74), Expect = 1.5
 Identities = 26/65 (40%), Positives = 33/65 (50%)
 Frame = +2

Query: 257 AAAIRAAIRAASRSFAVMPLATGSPAAAPSAVGAALASGRLPLPASAAAAGLATRAMPPA 436
           AAA  AA  AA+ + A    A  + AAA +A  AA A+G     AS AAAG A  A   A
Sbjct: 76  AAAAAAAAGAAATAAAAAGAAATAEAAAGAAAAAAAAAG--AAEASEAAAGAAAAAAAAA 133

Query: 437 GKSSS 451
             + +
Sbjct: 134 AAAGA 138

 Score = 33.1 bits (74), Expect = 1.5
 Identities = 24/62 (38%), Positives = 26/62 (41%)
 Frame = -3

Query: 435 AGGMARVARPAAAAEAGSGRRPEASAAPTADGAAAGEPVAKGMTAKERLAARMAARMAAA 256
           A   A     AA   A +G    A+AA TA  AAA    A    A    AA  AA  AAA
Sbjct: 33  AAAAAAATGAAATTAAAAGAAAAAAAATTAAAAAAAGAAATAGAAAAAAAAGAAATAAAA 92

Query: 255 GG 250
            G
Sbjct: 93  AG 94

 Score = 32.7 bits (73), Expect = 2.0
 Identities = 25/65 (38%), Positives = 32/65 (48%)
 Frame = +2

Query: 257 AAAIRAAIRAASRSFAVMPLATGSPAAAPSAVGAALASGRLPLPASAAAAGLATRAMPPA 436
           AAA  AA   A+ + A    AT   AAA +A GAA          +AAAAG A  A   A
Sbjct: 52  AAAAAAAATTAAAAAAAGAAATAGAAAAAAAAGAA--------ATAAAAAGAAATAEAAA 103

Query: 437 GKSSS 451
           G +++
Sbjct: 104 GAAAA 108

 Score = 32.7 bits (73), Expect = 2.0
 Identities = 29/64 (45%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 435 AGGMARVARPAAAAEAGSGRRPEAS-AAPTADGAAAGEPVAKGMTAKERLAARMAARMAA 259
           A   A  A  AAAA A +    EAS AA  A  AAA    A G TA    AA  AA  AA
Sbjct: 95  AAATAEAAAGAAAAAAAAAGAAEASEAAAGAAAAAAAAAAAAGATATAAAAAG-AASAAA 153

Query: 258 AGGG 247
           A  G
Sbjct: 154 AAAG 157

 Score = 32.7 bits (73), Expect = 2.0
 Identities = 24/62 (38%), Positives = 26/62 (41%)
 Frame = -3

Query: 435 AGGMARVARPAAAAEAGSGRRPEASAAPTADGAAAGEPVAKGMTAKERLAARMAARMAAA 256
           A   A  A  AAAA A +G     +AA  A  AAA    A    A    A   AA  AAA
Sbjct: 23  AAAAAAAAAAAAAAAAATGAAATTAAAAGAAAAAAAATTAAAAAAAGAAATAGAAAAAAA 82

Query: 255 GG 250
            G
Sbjct: 83  AG 84

 Score = 32.3 bits (72), Expect = 2.6
 Identities = 22/64 (34%), Positives = 31/64 (48%)
 Frame = +2

Query: 260 AAIRAAIRAASRSFAVMPLATGSPAAAPSAVGAALASGRLPLPASAAAAGLATRAMPPAG 439
           AA  AA  A + + A    A  + AAA +A GAA  +      A+AAAA     A   AG
Sbjct: 10  AAAGAAAPAGTAAAAAAAAAAAAAAAAAAATGAAATTAAAAGAAAAAAAATTAAAAAAAG 69

Query: 440 KSSS 451
            +++
Sbjct: 70  AAAT 73

 Score = 32.3 bits (72), Expect = 2.6
 Identities = 23/60 (38%), Positives = 25/60 (41%)
 Frame = -3

Query: 435 AGGMARVARPAAAAEAGSGRRPEASAAPTADGAAAGEPVAKGMTAKERLAARMAARMAAA 256
           AG  A  A   AAA A +     A+A   A  AAA    A    A E  A   AA  AAA
Sbjct: 74  AGAAAAAAAAGAAATAAAAAGAAATAEAAAGAAAAAAAAAGAAEASEAAAGAAAAAAAAA 133

 Score = 32.0 bits (71), Expect = 3.4
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = +2

Query: 257 AAAIRAAIRAASRSFAVMPLATGSPAAAPSAVGAAL----ASGRLPLPASAAAAGLATRA 424
           AAA  AA  AA+   A    A G+ A A +A GAA     A+G     A+AA A  A+ A
Sbjct: 62  AAAAAAAGAAATAGAAAAAAAAGAAATAAAAAGAAATAEAAAGAAAAAAAAAGAAEASEA 121

Query: 425 MPPAGKSSS 451
              A  +++
Sbjct: 122 AAGAAAAAA 130

 Score = 31.6 bits (70), Expect = 4.4
 Identities = 23/64 (35%), Positives = 30/64 (45%)
 Frame = +2

Query: 257 AAAIRAAIRAASRSFAVMPLATGSPAAAPSAVGAALASGRLPLPASAAAAGLATRAMPPA 436
           AAA   A  AA+   A    A  + AAA +A  AA A+G      +AA A  A  A   A
Sbjct: 56  AAAATTAAAAAAAGAAATAGAAAAAAAAGAAATAAAAAGAAATAEAAAGAAAAAAAAAGA 115

Query: 437 GKSS 448
            ++S
Sbjct: 116 AEAS 119

 Score = 30.8 bits (68), Expect = 7.5
 Identities = 23/66 (34%), Positives = 32/66 (47%), Gaps = 1/66 (1%)
 Frame = +2

Query: 257 AAAIRAAIRAASRSFAVMPLATGSPAAAPSAV-GAALASGRLPLPASAAAAGLATRAMPP 433
           A+   A   AA+ + A    AT + AAA  A   AA A+G    PA+AA A  A  A   
Sbjct: 118 ASEAAAGAAAAAAAAAAAAGATATAAAAAGAASAAAAAAGAAEAPAAAAGAAAAAAAAAA 177

Query: 434 AGKSSS 451
           A  +++
Sbjct: 178 AAAAAA 183

 Score = 30.8 bits (68), Expect = 7.5
 Identities = 27/62 (43%), Positives = 30/62 (47%), Gaps = 1/62 (1%)
 Frame = -3

Query: 435 AGGMARVARPAAAAEAGSGRRPEASA-APTADGAAAGEPVAKGMTAKERLAARMAARMAA 259
           A   A  A   AAA AG+    EA+A A  A  AAAG   A+   A    AA  AA  AA
Sbjct: 78  AAAAAAGAAATAAAAAGAAATAEAAAGAAAAAAAAAG--AAEASEAAAGAAAAAAAAAAA 135

Query: 258 AG 253
           AG
Sbjct: 136 AG 137

 Score = 30.8 bits (68), Expect = 7.5
 Identities = 24/63 (38%), Positives = 26/63 (41%)
 Frame = -3

Query: 435 AGGMARVARPAAAAEAGSGRRPEASAAPTADGAAAGEPVAKGMTAKERLAARMAARMAAA 256
           A   A  A  AAA  A +     A+AA T   AAA    A    A    AA  AA  AAA
Sbjct: 32  AAAAAAAATGAAATTAAAAGAAAAAAAATTAAAAAAAGAAATAGAAAAAAAAGAAATAAA 91

Query: 255 GGG 247
             G
Sbjct: 92  AAG 94

 Score = 30.4 bits (67), Expect = 9.8
 Identities = 19/53 (35%), Positives = 29/53 (53%)
 Frame = +2

Query: 266 IRAAIRAASRSFAVMPLATGSPAAAPSAVGAALASGRLPLPASAAAAGLATRA 424
           ++ A++AA+ + A    A  + AAA +A  AA A+       +AAAAG A  A
Sbjct: 4   LQLAVQAAAGAAAPAGTAAAAAAAAAAAAAAAAAAATGAAATTAAAAGAAAAA 56

 Score = 30.4 bits (67), Expect = 9.8
 Identities = 22/57 (38%), Positives = 26/57 (45%)
 Frame = -3

Query: 426 MARVARPAAAAEAGSGRRPEASAAPTADGAAAGEPVAKGMTAKERLAARMAARMAAA 256
           + ++A  AAA  A       A+AA  A  AAA    A G  A    AA  AA  AAA
Sbjct: 3   LLQLAVQAAAGAAAPAGTAAAAAAAAAAAAAAAAAAATGAAATTAAAAGAAAAAAAA 59

 Score = 30.4 bits (67), Expect = 9.8
 Identities = 25/66 (37%), Positives = 32/66 (47%), Gaps = 1/66 (1%)
 Frame = +2

Query: 257 AAAIRAAIRAASRSFAVMPLATGSPAAAPSAVGAALASGRL-PLPASAAAAGLATRAMPP 433
           AAA  AA  AA  S A    A  + AAA +A   A A+       A+AAAAG A      
Sbjct: 106 AAAAAAAAGAAEASEAAAGAAAAAAAAAAAAGATATAAAAAGAASAAAAAAGAAEAPAAA 165

Query: 434 AGKSSS 451
           AG +++
Sbjct: 166 AGAAAA 171

>gb|AAK63051.1|AF340011_1 spore wall protein-1 [Encephalitozoon cuniculi]
          Length = 125

 Score = 39.7 bits (91), Expect = 0.016
 Identities = 26/76 (34%), Positives = 38/76 (49%)
 Frame = -2

Query: 418 GSQASCSSGGRQR*AP*GKCGTNS*RGRGRRACGQGHDSKGAAGSANGGSDGGCRWRIVN 239
           GS +  SSGG       G+ G +S  G G    G G  S G++GS +GG  GG      +
Sbjct: 43  GSGSGGSSGGSSGSGSGGESGGSS--GSGSDGSGSGGSSGGSSGSGSGGESGGSSGSGSD 100

Query: 238 FAEAGGTSTGVPSTGA 191
            + +GG+S G   +G+
Sbjct: 101 GSGSGGSSGGSSGSGS 116

 Score = 34.7 bits (78), Expect = 0.52
 Identities = 21/53 (39%), Positives = 27/53 (50%)
 Frame = -2

Query: 418 GSQASCSSGGRQR*AP*GKCGTNS*RGRGRRACGQGHDSKGAAGSANGGSDGG 260
           GS +  SSGG       G+ G +S  G G    G G  S G++GS +GG  GG
Sbjct: 72  GSGSGGSSGGSSGSGSGGESGGSS--GSGSDGSGSGGSSGGSSGSGSGGESGG 122

 Score = 34.7 bits (78), Expect = 0.52
 Identities = 25/76 (32%), Positives = 35/76 (45%)
 Frame = -2

Query: 418 GSQASCSSGGRQR*AP*GKCGTNS*RGRGRRACGQGHDSKGAAGSANGGSDGGCRWRIVN 239
           GS  S S G        G  G +S  G G    G G  S G++GS +GG  GG      +
Sbjct: 18  GSSGSGSDGSGSG----GSSGGSS--GSGSDGSGSGGSSGGSSGSGSGGESGGSSGSGSD 71

Query: 238 FAEAGGTSTGVPSTGA 191
            + +GG+S G   +G+
Sbjct: 72  GSGSGGSSGGSSGSGS 87

>gb|AAM96980.1| putative protein [Arabidopsis thaliana] gi|28059781|gb|AAO30092.1|
           putative protein [Arabidopsis thaliana]
          Length = 357

 Score = 39.7 bits (91), Expect = 0.016
 Identities = 25/68 (36%), Positives = 35/68 (50%), Gaps = 3/68 (4%)
 Frame = +3

Query: 252 HLQPPSEPPFALPAAPLLSCPWP---QALLPRPRQLLVPHLPQGAYRCLPPLLQLAWLPG 422
           H++P ++PP +LP  P  +   P   Q  LP P+Q ++PH  Q  +   PP LQL  LP 
Sbjct: 42  HVEPTAQPPASLPQPPASAAAPPSLTQQGLP-PQQFILPHASQ--HGLSPPSLQLPQLPN 98

Query: 423 PCPQQASP 446
               Q  P
Sbjct: 99  QFSPQQEP 106



EST assemble image


clone accession position
1 HCL064f08_r AV643148 1 458
2 LCL054b02_r AV629200 33 266




Chlamydomonas reinhardtii
Kazusa DNA Research Institute