KCC002586A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002586A_C01 KCC002586A_c01
ctgcatagttactgtttgtattaatttcggaCGGTCCCAACTTGAGACAAAGAAGTTGCG
CGGACCGAGTGCCGCTTTTTCTTCAAAAGACAAATGGCCGCGATAGGATGGCCCGGCATC
GTCGCGATCATCAGTGTCGCGATATCGTTCATCATCATGGCCGCGGACTGGGTCGGCCCT
GACATAACCTTCACGATCCTGCTTTCATGGTTAACAGCTTTCGATGGTAAAATCATCACA
GTTGCCAAAGCCGCGGCGGGCTACGGCAACACTGGCCTCCTTACCGTCATCTTTCTGTAC
TGGGTGGCAGAGGGCGTTACGCAGACCGGAGGTCTAGAGCTAGTCATGAACTACGTCCTG
GGCCGCTCCCGGTCAGTGCACTGGGCGTTGGTGCGCTCAATGTTCCCCGTGATGGTCTTG
TCCGCGTTCCTGAACAACACCCCGTGCGTCACCTTCATGATCCCCATCCTGATGTCCTGG
GCTCGGCGCTGCGGCGTGCCGCCTAAGAAGCTGCTCATTCCGCTGTCGTACGCGGCCGTG
CTGGGTGGCACATGCACTTCCATCGGTACCTCCACCAACCTGGTCATCGTGGGCATGCAA
GACACGCGTTACAACAAGCAGAACAAGGAGGATGAGGCCAAGTTCGGCATGTTTGACATT
GCGCCGTACGGAGTGCCGTACGCGCTCATGGGCTTTGTCTTCATCATCCTAACGCAACGG
TTCCTGCTGCCGGGCAACAGCTCGCGCTACGCTAAGGACCTGCTCATTGCTGTGCGCGTG
CTGCCCAGCTCTCCGGTCGTTAAGAAGAAGCTCAAGGACTCGGGCTTGCGCACACAGACT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002586A_C01 KCC002586A_c01
         (840 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_244250.1| sodium/sulfate symporter [Bacillus halodurans] ...   144  1e-33
ref|NP_865825.1| sodium/sulfate symporter [Pirellula sp.] gi|324...   134  2e-30
ref|NP_692581.1| sulfur deprivation response regulator [Oceanoba...   126  5e-28
ref|NP_785011.1| sodium/sulfate symport protein (putative) [Lact...   123  4e-27
ref|NP_295134.1| transporter, sodium/sulfate symporter family [D...   119  5e-26

>ref|NP_244250.1| sodium/sulfate symporter [Bacillus halodurans]
           gi|25494728|pir||H84072 sodium/sulfate symporter BH3384
           [imported] - Bacillus halodurans (strain C-125)
           gi|10176007|dbj|BAB07103.1| sodium/sulfate symporter
           [Bacillus halodurans]
          Length = 589

 Score =  144 bits (364), Expect = 1e-33
 Identities = 86/234 (36%), Positives = 129/234 (54%), Gaps = 6/234 (2%)
 Frame = +1

Query: 148 FIIMAADWVGPDITFTILLSWLTAFDGKIITVAKAAAGYGNTGLLTVIFLYWVAEGVTQT 327
           F+ +  +W  P++T    LS L  F+  ++T  +A  G+ NTG+ TV  L+ +A  V+++
Sbjct: 17  FVALIREWFVPELTVFFALSSLVLFN--VLTPGEALNGFANTGVHTVALLFVIAAAVSKS 74

Query: 328 GGLELVMNYVLGRSRSVHWALVRSMFPVMVLSAFLNNTPCVTFMIPILMSWARRCGVPPK 507
             L  +M  VL ++ ++   L R M P+  LSAF+NNTP VT +IP +  WA    + P 
Sbjct: 75  DVLHQLMKRVLHQTTNLSTILCRLMIPISSLSAFMNNTPIVTMLIPTVQQWAISNKIKPS 134

Query: 508 KLLIPLSYAAVLGGTCTSIGTSTNLVIVGMQDTRYNKQNKEDEAKFGMFDIAPYGVPYAL 687
           KLLIPLSYAA+LGGT T IGTS NLVI G+          +    F MFD A +G+P  +
Sbjct: 135 KLLIPLSYAAILGGTITLIGTSGNLVIHGL-------MLDKGLDGFSMFDFAYFGIPLTI 187

Query: 688 MGFVFIILTQRFLLPGNSSRYA------KDLLIAVRVLPSSPVVKKKLKDSGLR 831
           +G ++++L     LP      A      +  +    V  SSP++ K +K+  LR
Sbjct: 188 VGILYMVLFGHRFLPDREHHVAELQDTERSYMFQFIVETSSPLIGKTIKEGMLR 241

>ref|NP_865825.1| sodium/sulfate symporter [Pirellula sp.]
           gi|32444068|emb|CAD73510.1| sodium/sulfate symporter
           [Pirellula sp.]
          Length = 612

 Score =  134 bits (337), Expect = 2e-30
 Identities = 75/205 (36%), Positives = 120/205 (57%), Gaps = 10/205 (4%)
 Frame = +1

Query: 247 KAAAGYGNTGLLTVIFLYWVAEGVTQTGGLELVMNYVLGRSRSVHWALVRSMFPVMVLSA 426
           +A AG+GN GL+T+  L+ V  G+  TGG EL   ++L +++++    VR + PV  LS 
Sbjct: 61  QAVAGFGNKGLITIALLFAVVAGLELTGGTELATGWLLSKAKNLRDTQVRMLLPVAFLSG 120

Query: 427 FLNNTPCVTFMIPILMSWARRCGVPPKKLLIPLSYAAVLGGTCTSIGTSTNLVIVGMQDT 606
           FLNNTP V  M+P++    +R  + P +LL+PLSYAA+LGG CT +GTSTNL +V  +  
Sbjct: 121 FLNNTPVVAAMLPVVGDLGKRLTISPSRLLLPLSYAAILGGMCTLMGTSTNL-LVRDEYV 179

Query: 607 RYNKQNKE-----DEAKFGMFDIAPYGVPYALMGFVFIILTQRFLLPGNSSRYA-----K 756
           +Y    K      + A+   F  A  G+P  ++G ++II   ++LLP      +     +
Sbjct: 180 QYISDAKAAGAEIEMAELSFFTPAIAGIPATILGLIYIIGASKWLLPERKPAVSVGDDPQ 239

Query: 757 DLLIAVRVLPSSPVVKKKLKDSGLR 831
              + ++V  + P+V K L+++GLR
Sbjct: 240 KYTVEMQVELTGPLVGKTLQEAGLR 264

>ref|NP_692581.1| sulfur deprivation response regulator [Oceanobacillus iheyensis
           HTE831] gi|22777343|dbj|BAC13616.1| sulfur deprivation
           response regulator [Oceanobacillus iheyensis HTE831]
          Length = 588

 Score =  126 bits (316), Expect = 5e-28
 Identities = 79/223 (35%), Positives = 118/223 (52%), Gaps = 7/223 (3%)
 Frame = +1

Query: 184 ITFTILLSWLTAFDGKIITVAKAAAGYGNTGLLTVIFLYWVAEGVTQTGGLELVMNYVLG 363
           + FT+L  +L      I+  ++A +G+ N G++TV  L+ VA  V ++G LE +M   + 
Sbjct: 25  VVFTVLTVFLIT---GILNPSEALSGFSNEGMITVGLLFVVAGAVKKSGILEDIMKSWMA 81

Query: 364 RSRSVHWALVRSMFPVMVLSAFLNNTPCVTFMIPILMSWARRCGVPPKKLLIPLSYAAVL 543
            S  +  ++ R   PV +LS FLNNTP V   +PI+  W    G+ P K LIPLSY  +L
Sbjct: 82  GSHRMIDSVARFFIPVSLLSGFLNNTPIVVTFMPIVKGWCEERGIAPSKFLIPLSYVTIL 141

Query: 544 GGTCTSIGTSTNLVIVGMQ-DTRYNKQNKEDEAKFGMFDIAPYGVPYALMGFVFIILTQR 720
           GGT T +GTSTNLV+ GM  D  Y          F +F +A  G+P  ++G ++I     
Sbjct: 142 GGTITVLGTSTNLVVHGMLIDYGY--------GGFTLFQLAIVGIPITIVGLIYIFTIGS 193

Query: 721 FLLPGNS------SRYAKDLLIAVRVLPSSPVVKKKLKDSGLR 831
            LLP N           ++ L  + V  S P   + +K++GLR
Sbjct: 194 KLLPENKGLQQQIDEDPREYLAELIVDQSFPYANQSIKNAGLR 236

>ref|NP_785011.1| sodium/sulfate symport protein (putative) [Lactobacillus plantarum
           WCFS1] gi|28270954|emb|CAD63858.1| sodium/sulfate
           symport protein (putative) [Lactobacillus plantarum
           WCFS1]
          Length = 591

 Score =  123 bits (308), Expect = 4e-27
 Identities = 68/204 (33%), Positives = 118/204 (57%)
 Frame = +1

Query: 121 VAIISVAISFIIMAADWVGPDITFTILLSWLTAFDGKIITVAKAAAGYGNTGLLTVIFLY 300
           + +I++ +SFI+MA +   P+      L++L  F G I++   A +G+ N GL T+  +Y
Sbjct: 7   IVLITLLVSFILMAMEVTTPNAVILCALAFLM-FVG-ILSPTDALSGFANDGLATIALMY 64

Query: 301 WVAEGVTQTGGLELVMNYVLGRSRSVHWALVRSMFPVMVLSAFLNNTPCVTFMIPILMSW 480
            +A  + ++  +  + + +LG   S   +L+R +  V V+S F+NNTP V+ + P++  W
Sbjct: 65  IIAYAIAKSNIIIRLFDRILGDGHSEKRSLLRLLASVSVISPFMNNTPIVSTLTPMVQRW 124

Query: 481 ARRCGVPPKKLLIPLSYAAVLGGTCTSIGTSTNLVIVGMQDTRYNKQNKEDEAKFGMFDI 660
            ++ G+   K LIPLSYA +L G  T +GTSTNLV  G+        +K   A+FG FD+
Sbjct: 125 TKQKGMAISKFLIPLSYATILSGLLTVLGTSTNLVAQGL-------LSKYKLAQFGTFDL 177

Query: 661 APYGVPYALMGFVFIILTQRFLLP 732
           A  G+P  ++G ++++     +LP
Sbjct: 178 AVIGIPITIIGLIYLLTIGYRMLP 201

>ref|NP_295134.1| transporter, sodium/sulfate symporter family [Deinococcus
           radiodurans] gi|7474037|pir||F75398 transporter,
           sodium/sulfate symporter family - Deinococcus
           radiodurans (strain R1)
           gi|6459164|gb|AAF10977.1|AE001986_2 transporter,
           sodium/sulfate symporter family [Deinococcus
           radiodurans]
          Length = 589

 Score =  119 bits (299), Expect = 5e-26
 Identities = 73/242 (30%), Positives = 130/242 (53%), Gaps = 3/242 (1%)
 Frame = +1

Query: 112 PGIVAIISVAISFIIMAADWVGPDITFTILLSWLTAFDGKIITVAKAAAGYGNTGLLTVI 291
           P  + +I   ++ ++ A +W+  D+T   LLS L  F   ++   +A AG+G+  +LT+ 
Sbjct: 3   PVTILLILFVVALVLFATEWLPVDVTALGLLSALLLFG--LLKPKEAFAGFGSDTVLTLA 60

Query: 292 FLYWVAEGVTQTGGLELVMNYVLGRSRSVHWALVRSMFPVMVLSAFLNNTPCVTFMIPIL 471
            L+ +   + + G +E + + +  R+R+ +  L   +  V  +S+  +NT      +P++
Sbjct: 61  SLFILTRVLLRAGVIEWIGHALARRARNANAMLRAMLGTVAGVSSLTSNTATTAVFLPVV 120

Query: 472 MSWARRCGVPPKKLLIPLSYAAVLGGTCTSIGTSTNLVIVGMQDTRYNKQNKEDEAKFGM 651
              +RR G+P  + L+PL++A++LGGT T IGTSTNLV+ G       K         G 
Sbjct: 121 SGLSRRAGIPASRSLMPLAFASILGGTITVIGTSTNLVVSGALPATGLK-------PLGF 173

Query: 652 FDIAPYGVPYALMGFVFIILTQRFLLPGNSSRYAKDL---LIAVRVLPSSPVVKKKLKDS 822
           F++A  GVP AL+G +++      LLP   ++    L   L  + V P SP++ + L++S
Sbjct: 174 FELAWVGVPVALVGLLYLFFVAPKLLPDREAQLEDTLRAYLADLTVAPGSPLIGQSLRES 233

Query: 823 GL 828
           GL
Sbjct: 234 GL 235



EST assemble image


clone accession position
1 LCL002h12_r AV626137 1 309
2 MXL069f07_r BP097078 32 533
3 HCL064a04_r AV643114 38 528
4 LCL070g09_r AV630003 236 547
5 MXL077b09_r BP097519 238 711
6 LCL012b01_r AV626598 310 841




Chlamydomonas reinhardtii
Kazusa DNA Research Institute