Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002585A_C01 KCC002585A_c01
(717 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567015.1| splicing factor, putative [Arabidopsis thaliana... 321 6e-87
sp|Q15393|S3B3_HUMAN Splicing factor 3B subunit 3 (Spliceosome a... 294 1e-78
ref|NP_036558.1| splicing factor 3b, subunit 3, 130kDa; spliceos... 294 1e-78
ref|NP_598714.1| splicing factor 3b, subunit 3, 130kDa [Mus musc... 294 1e-78
dbj|BAC32894.1| unnamed protein product [Mus musculus] 294 1e-78
>ref|NP_567015.1| splicing factor, putative [Arabidopsis thaliana]
gi|18410226|ref|NP_567016.1| splicing factor, putative
[Arabidopsis thaliana] gi|11358854|pir||T47659
spliceosomal-like protein - Arabidopsis thaliana
gi|7019653|emb|CAB75754.1| spliceosomal-like protein
[Arabidopsis thaliana] gi|7019655|emb|CAB75756.1|
spliceosomal-like protein [Arabidopsis thaliana]
Length = 1214
Score = 321 bits (823), Expect = 6e-87
Identities = 157/238 (65%), Positives = 192/238 (79%)
Frame = +3
Query: 3 EVKVKYFDTIPVTASIAVLKTGFLFAASEYGNHALYQFVGTGEDDDDVESSSAQLVATEE 182
E+KVKYFDTIPV +SI VLK GFLF+ASE+GNH LYQF GE+ D VESSS+ L+ TEE
Sbjct: 320 ELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPD-VESSSSNLMETEE 378
Query: 183 GFQPVFFEPRPLKNLLLIDEMASLMPITDMKVANLLGEEIPQIYALCGRGPRASLSVLRP 362
GFQPVFF+PR LKNL+ ID++ SLMP+ DMKV N+ EE PQI++LCGRGPR+SL +LRP
Sbjct: 379 GFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRP 438
Query: 363 GLAVTELAVSPLPGAPTAVWTVRRAASDEYDAYIVVSFANATLVFSIGEEVKETNESGFL 542
GLA+TE+AVS LPG P+AVWTV++ SDE+DAYIVVSF NATLV SIGE+V+E N+SGFL
Sbjct: 439 GLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFL 498
Query: 543 GTVPTLHTQLLADNSMLQVYPGGLRHIRPDRRINEWKVPGRRVIKAAASNDKQVAIAL 716
T P+L L+ D+S++QV+P G+RHIR D RINEW+ PG+R I N QV IAL
Sbjct: 499 DTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIAL 556
>sp|Q15393|S3B3_HUMAN Splicing factor 3B subunit 3 (Spliceosome associated protein 130)
(SAP 130) (SF3b130) (Pre-mRNA splicing factor SF3b 130
kDa subunit) gi|6006515|emb|CAB56791.1| spliceosomal
protein SAP 130 [Homo sapiens]
Length = 1217
Score = 294 bits (752), Expect = 1e-78
Identities = 144/238 (60%), Positives = 181/238 (75%)
Frame = +3
Query: 3 EVKVKYFDTIPVTASIAVLKTGFLFAASEYGNHALYQFVGTGEDDDDVESSSAQLVATEE 182
E+++KYFDT+PV A++ VLKTGFLF ASE+GNH LYQ G+DD++ E SSA + EE
Sbjct: 324 EIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSA--MPLEE 381
Query: 183 GFQPVFFEPRPLKNLLLIDEMASLMPITDMKVANLLGEEIPQIYALCGRGPRASLSVLRP 362
G FF+PRPLKNL+L+DE+ SL PI ++A+L E+ PQ+Y CGRGPR+SL VLR
Sbjct: 382 G-DTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRH 440
Query: 363 GLAVTELAVSPLPGAPTAVWTVRRAASDEYDAYIVVSFANATLVFSIGEEVKETNESGFL 542
GL V+E+AVS LPG P AVWTVRR DE+DAYI+VSF NATLV SIGE V+E +SGFL
Sbjct: 441 GLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDSGFL 500
Query: 543 GTVPTLHTQLLADNSMLQVYPGGLRHIRPDRRINEWKVPGRRVIKAAASNDKQVAIAL 716
GT PTL LL D++++QVYP G+RHIR D+R+NEWK PG++ I A N +QV IAL
Sbjct: 501 GTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPGKKTIVKCAVNQRQVVIAL 558
>ref|NP_036558.1| splicing factor 3b, subunit 3, 130kDa; spliceosome-associated protein
130 [Homo sapiens] gi|3540219|dbj|BAA32662.1| KIAA0017
protein [Homo sapiens]
Length = 1217
Score = 294 bits (752), Expect = 1e-78
Identities = 144/238 (60%), Positives = 181/238 (75%)
Frame = +3
Query: 3 EVKVKYFDTIPVTASIAVLKTGFLFAASEYGNHALYQFVGTGEDDDDVESSSAQLVATEE 182
E+++KYFDT+PV A++ VLKTGFLF ASE+GNH LYQ G+DD++ E SSA + EE
Sbjct: 324 EIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSA--MPLEE 381
Query: 183 GFQPVFFEPRPLKNLLLIDEMASLMPITDMKVANLLGEEIPQIYALCGRGPRASLSVLRP 362
G FF+PRPLKNL+L+DE+ SL PI ++A+L E+ PQ+Y CGRGPR+SL VLR
Sbjct: 382 G-DTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRH 440
Query: 363 GLAVTELAVSPLPGAPTAVWTVRRAASDEYDAYIVVSFANATLVFSIGEEVKETNESGFL 542
GL V+E+AVS LPG P AVWTVRR DE+DAYI+VSF NATLV SIGE V+E +SGFL
Sbjct: 441 GLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDSGFL 500
Query: 543 GTVPTLHTQLLADNSMLQVYPGGLRHIRPDRRINEWKVPGRRVIKAAASNDKQVAIAL 716
GT PTL LL D++++QVYP G+RHIR D+R+NEWK PG++ I A N +QV IAL
Sbjct: 501 GTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPGKKTIVKCAVNQRQVVIAL 558
>ref|NP_598714.1| splicing factor 3b, subunit 3, 130kDa [Mus musculus]
gi|15030278|gb|AAH11412.1| Splicing factor 3b, subunit 3,
130kDa [Mus musculus] gi|26353236|dbj|BAC40248.1| unnamed
protein product [Mus musculus] gi|27503728|gb|AAH42580.1|
Splicing factor 3b, subunit 3, 130kDa [Mus musculus]
Length = 1217
Score = 294 bits (752), Expect = 1e-78
Identities = 144/238 (60%), Positives = 181/238 (75%)
Frame = +3
Query: 3 EVKVKYFDTIPVTASIAVLKTGFLFAASEYGNHALYQFVGTGEDDDDVESSSAQLVATEE 182
E+++KYFDT+PV A++ VLKTGFLF ASE+GNH LYQ G+DD++ E SSA + EE
Sbjct: 324 EIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSA--MPLEE 381
Query: 183 GFQPVFFEPRPLKNLLLIDEMASLMPITDMKVANLLGEEIPQIYALCGRGPRASLSVLRP 362
G FF+PRPLKNL+L+DE+ SL PI ++A+L E+ PQ+Y CGRGPR+SL VLR
Sbjct: 382 G-DTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRH 440
Query: 363 GLAVTELAVSPLPGAPTAVWTVRRAASDEYDAYIVVSFANATLVFSIGEEVKETNESGFL 542
GL V+E+AVS LPG P AVWTVRR DE+DAYI+VSF NATLV SIGE V+E +SGFL
Sbjct: 441 GLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDSGFL 500
Query: 543 GTVPTLHTQLLADNSMLQVYPGGLRHIRPDRRINEWKVPGRRVIKAAASNDKQVAIAL 716
GT PTL LL D++++QVYP G+RHIR D+R+NEWK PG++ I A N +QV IAL
Sbjct: 501 GTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPGKKTIVKCAVNQRQVVIAL 558
>dbj|BAC32894.1| unnamed protein product [Mus musculus]
Length = 596
Score = 294 bits (752), Expect = 1e-78
Identities = 144/238 (60%), Positives = 181/238 (75%)
Frame = +3
Query: 3 EVKVKYFDTIPVTASIAVLKTGFLFAASEYGNHALYQFVGTGEDDDDVESSSAQLVATEE 182
E+++KYFDT+PV A++ VLKTGFLF ASE+GNH LYQ G+DD++ E SSA + EE
Sbjct: 324 EIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSA--MPLEE 381
Query: 183 GFQPVFFEPRPLKNLLLIDEMASLMPITDMKVANLLGEEIPQIYALCGRGPRASLSVLRP 362
G FF+PRPLKNL+L+DE+ SL PI ++A+L E+ PQ+Y CGRGPR+SL VLR
Sbjct: 382 G-DTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRH 440
Query: 363 GLAVTELAVSPLPGAPTAVWTVRRAASDEYDAYIVVSFANATLVFSIGEEVKETNESGFL 542
GL V+E+AVS LPG P AVWTVRR DE+DAYI+VSF NATLV SIGE V+E +SGFL
Sbjct: 441 GLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDSGFL 500
Query: 543 GTVPTLHTQLLADNSMLQVYPGGLRHIRPDRRINEWKVPGRRVIKAAASNDKQVAIAL 716
GT PTL LL D++++QVYP G+RHIR D+R+NEWK PG++ I A N +QV IAL
Sbjct: 501 GTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPGKKTIVKCAVNQRQVVIAL 558
