KCC002576A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002576A_C01 KCC002576A_c01
caaactaaactttgcaataggataaCACGAGAGTCTTACGCCTTGGACTGTCGCTTCAAA
ATTGGTCTAATTTTTCCTGAGCGCACGAGGGCTTCTCTAGAAGACCTGGGGTGCACTTGA
GCTGCCTTAAGCAAAGGCAGCAAGATGGGCCGAGCGTTGCTCTCAGCCCTGCTGCCGCTG
GCTCTGGCTTCGTTGGCGCGCGCATACTATGTGCCCGGCACGTATCCCGCGGAGTTTAGG
ATTGAGGATCCCCTCCAGGTGCACGTGAGCACGCTGACCTCGTTTGACACGGAGCTGCCT
TACGAGTACTACTCCATGCCCTTCTGCAAGCCCAAGGAGGGCGTGCACCGCATCGCCAAC
ACGGCCAACCCGGGCACCATCCTGGAGGGCATTCGGATAGAGAACTCGGTGTACAACTTC
ACCATGAAGGTTAAGCAGACGGGCGTGCTGGCCTGCCCGGGCGGCTCATACGGCAAGCTG
ACGGAGAAGGAGGTCAAGACGCTGAAGCGGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002576A_C01 KCC002576A_c01
         (511 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB10022.1| endosomal protein-like [Arabidopsis thaliana]          89  4e-17
ref|NP_187991.1| endomembrane protein 70, putative [Arabidopsis ...    84  8e-16
ref|NP_568465.1| endomembrane protein 70, putative [Arabidopsis ...    83  2e-15
pir||T06624 hypothetical protein T20K18.10 - Arabidopsis thalian...    80  2e-14
ref|NP_196645.2| endomembrane protein 70, putative [Arabidopsis ...    79  3e-14

>dbj|BAB10022.1| endosomal protein-like [Arabidopsis thaliana]
          Length = 658

 Score = 88.6 bits (218), Expect = 4e-17
 Identities = 48/122 (39%), Positives = 71/122 (57%)
 Frame = +1

Query: 145 MGRALLSALLPLALASLARAYYVPGTYPAEFRIEDPLQVHVSTLTSFDTELPYEYYSMPF 324
           M R  +  L  L +   +  +Y+PG+YP ++ + D L V V++LTS +TE+P+ YYS+PF
Sbjct: 4   MDRFGIWVLAILLVIQSSFGFYLPGSYPHKYEVGDYLNVKVNSLTSIETEMPFSYYSLPF 63

Query: 325 CKPKEGVHRIANTANPGTILEGIRIENSVYNFTMKVKQTGVLACPGGSYGKLTEKEVKTL 504
           CKP EG+   A   N G +L G RIENS Y F M   ++ +  C      KL+   +K L
Sbjct: 64  CKPSEGIKDSAE--NLGELLMGDRIENSPYRFRMFKNESEIFLC---QTDKLSADSLKLL 118

Query: 505 KR 510
           K+
Sbjct: 119 KK 120

>ref|NP_187991.1| endomembrane protein 70, putative [Arabidopsis thaliana]
           gi|9294023|dbj|BAB01926.1| multispanning membrane
           protein-like [Arabidopsis thaliana]
          Length = 641

 Score = 84.3 bits (207), Expect = 8e-16
 Identities = 52/126 (41%), Positives = 69/126 (54%)
 Frame = +1

Query: 130 SKGSKMGRALLSALLPLALASLARAYYVPGTYPAEFRIEDPLQVHVSTLTSFDTELPYEY 309
           +KGS   R   + LL     SL+RA+Y+PG  P +F+  DPL V V+ L+S  T+LPY+Y
Sbjct: 4   TKGSSF-RFYATLLLSFLSFSLSRAFYLPGVAPRDFQKGDPLYVKVNKLSSTKTQLPYDY 62

Query: 310 YSMPFCKPKEGVHRIANTANPGTILEGIRIENSVYNFTMKVKQTGVLACPGGSYGKLTEK 489
           Y + +CKP + ++   N  N G +L G RIENSVY F M   Q     C  G   KL   
Sbjct: 63  YYLNYCKPPKILN---NAENLGEVLRGDRIENSVYTFQMLEDQ----PCKVGCRVKLNAD 115

Query: 490 EVKTLK 507
             K  K
Sbjct: 116 STKNFK 121

>ref|NP_568465.1| endomembrane protein 70, putative [Arabidopsis thaliana]
           gi|13430446|gb|AAK25845.1|AF360135_1 putative
           multispanning membrane protein [Arabidopsis thaliana]
          Length = 644

 Score = 82.8 bits (203), Expect = 2e-15
 Identities = 41/94 (43%), Positives = 61/94 (64%)
 Frame = +1

Query: 157 LLSALLPLALASLARAYYVPGTYPAEFRIEDPLQVHVSTLTSFDTELPYEYYSMPFCKPK 336
           +L +++ L    +A ++Y+PG  P +F   D L+V V+ LTS  T+LPY YYS+PFC+PK
Sbjct: 12  ILGSVILLLSIHVAHSFYLPGVAPQDFEKGDELKVKVNKLTSIKTQLPYSYYSLPFCRPK 71

Query: 337 EGVHRIANTANPGTILEGIRIENSVYNFTMKVKQ 438
           + V    +T N G +L G RIEN+ Y+F M+  Q
Sbjct: 72  KIVD---STENLGEVLRGDRIENAPYSFKMREAQ 102

>pir||T06624 hypothetical protein T20K18.10 - Arabidopsis thaliana  (fragment)
           gi|4586242|emb|CAB40983.1| putative protein (fragment)
           [Arabidopsis thaliana]
          Length = 227

 Score = 79.7 bits (195), Expect = 2e-14
 Identities = 42/114 (36%), Positives = 68/114 (58%)
 Frame = +1

Query: 169 LLPLALASLARAYYVPGTYPAEFRIEDPLQVHVSTLTSFDTELPYEYYSMPFCKPKEGVH 348
           +L + ++ L   +Y+PG+Y   +   D +   V++LTS +TELP+ YYS+P+C+P EG+ 
Sbjct: 9   VLLVFVSQLCNGFYLPGSYMHTYSDGDSIFAKVNSLTSIETELPFSYYSLPYCQPLEGIK 68

Query: 349 RIANTANPGTILEGIRIENSVYNFTMKVKQTGVLACPGGSYGKLTEKEVKTLKR 510
           + A   N G +L G +I+NS Y F M+  ++  L     +   L E EVK LK+
Sbjct: 69  KSAE--NLGELLMGDQIDNSAYRFRMRTNESLYLC----TTSPLNEHEVKLLKQ 116

>ref|NP_196645.2| endomembrane protein 70, putative [Arabidopsis thaliana]
          Length = 648

 Score = 79.3 bits (194), Expect = 3e-14
 Identities = 41/91 (45%), Positives = 57/91 (62%)
 Frame = +1

Query: 166 ALLPLALASLARAYYVPGTYPAEFRIEDPLQVHVSTLTSFDTELPYEYYSMPFCKPKEGV 345
           AL+ L     A ++Y+PG  P +F   D L+V V+ LTS  T+LPY YYS+PFC+P + V
Sbjct: 21  ALIFLLFIHGAHSFYLPGVAPQDFEKGDELKVKVNKLTSIKTQLPYSYYSLPFCRPSKIV 80

Query: 346 HRIANTANPGTILEGIRIENSVYNFTMKVKQ 438
               +T N G +L G RIEN+ Y+F M+  Q
Sbjct: 81  D---STENLGEVLRGDRIENAPYSFKMREAQ 108



EST assemble image


clone accession position
1 MXL002e02_r BP093037 1 505
2 MXL044g12_r BP095627 26 250
3 HCL062c04_r AV643015 29 511




Chlamydomonas reinhardtii
Kazusa DNA Research Institute