>KCC002564A_C01 KCC002564A_c01
ccaattagctaggtagtgctaacagcatgtcaaccacgcacccgcCAGAGCGCGGGCTTG
TAGCACTAATTAAGGGGCTGACTATCGGGAACGTGCCTGCGCTTCAGCCCGATGTGCTAG
AGCTTTACGCGGAGCTCAAGGGAGCCTACGAGGCACAGGAGCGCGCTGCCCCGAGGGAGT
ATGCGGGCGACCAGGACGAGGACGTGAAGCAGGCGTGCAAGCAGGCCAGCCTGCTCTTCG
TGGCGCGAGTTCTCTCCGCGGCGCAGAAGAAGGAGAAGGATGGCAGCGAAACGCAGCCTT
CGAACTTGGGGCTTTCCATTTCTCGCATCGTGGCTGTGGCCGGCATCAACCTGCTGGACT
TCTTTCGCGAGGTGCACGTCGTCGTGAGCGAGCTGTCGGCTTATTTCGAGTCGCGCGGCA
GCAGCTCAAAGCAGTTCAGCCAGCAGGCGCTGCTGAAGGAGAACTCGGAAACGGTGGTCG
TGATGGGACTCCTGGCCAAGAAATACAAGGACAACTTCAACA

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002564A_C01 KCC002564A_c01
         (522 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK68064.1|AF375824_1 mating type protein Mat3p [Chlamydomona...   318  3e-86
ref|NP_045322.1| very large virion protein (tegument) [Bovine he...    49  5e-05
ref|NP_294202.1| penicillin-binding protein 1 [Deinococcus radio...    48  9e-05
ref|NP_601191.1| translation initiation factor 2 [Corynebacteriu...    47  1e-04
ref|NP_492875.2| pre-mRNA splicing SR protein related (68.2 kD) ...    47  1e-04

>gb|AAK68064.1|AF375824_1 mating type protein Mat3p [Chlamydomonas reinhardtii]
          Length = 1209

 Score =  318 bits (814), Expect = 3e-86
 Identities = 165/165 (100%), Positives = 165/165 (100%)
 Frame = +3

Query: 27  MSTTHPPERGLVALIKGLTIGNVPALQPDVLELYAELKGAYEAQERAAPREYAGDQDEDV 206
           MSTTHPPERGLVALIKGLTIGNVPALQPDVLELYAELKGAYEAQERAAPREYAGDQDEDV
Sbjct: 1   MSTTHPPERGLVALIKGLTIGNVPALQPDVLELYAELKGAYEAQERAAPREYAGDQDEDV 60

Query: 207 KQACKQASLLFVARVLSAAQKKEKDGSETQPSNLGLSISRIVAVAGINLLDFFREVHVVV 386
           KQACKQASLLFVARVLSAAQKKEKDGSETQPSNLGLSISRIVAVAGINLLDFFREVHVVV
Sbjct: 61  KQACKQASLLFVARVLSAAQKKEKDGSETQPSNLGLSISRIVAVAGINLLDFFREVHVVV 120

Query: 387 SELSAYFESRGSSSKQFSQQALLKENSETVVVMGLLAKKYKDNFN 521
           SELSAYFESRGSSSKQFSQQALLKENSETVVVMGLLAKKYKDNFN
Sbjct: 121 SELSAYFESRGSSSKQFSQQALLKENSETVVVMGLLAKKYKDNFN 165

>ref|NP_045322.1| very large virion protein (tegument) [Bovine herpesvirus 1]
            gi|1491621|emb|CAB01605.1| UL36 [Bovine herpesvirus 1]
            gi|2653311|emb|CAA06097.1| very large virion protein
            (tegument) [Bovine herpesvirus type 1.1 (strain Cooper)]
          Length = 3247

 Score = 48.5 bits (114), Expect = 5e-05
 Identities = 48/135 (35%), Positives = 53/135 (38%), Gaps = 16/135 (11%)
 Frame = -1

Query: 486  PSRPPFPSSPSAAPAG*T-ALSCCR-------ATRNKPTARSRRRAPRERSPAG*CRPQP 331
            P+  P P  P  AP G   ALS  R       A ++ P A+ R+R  R RSPA    P P
Sbjct: 2729 PAPTPAPPLPPPAPDGAMGALSATRRPTRRAGARKSLPAAQPRQRLLRSRSPAS--VPAP 2786

Query: 330  RCEKWKAPSSKAAFRCHPS--PSSAPRRE------LAPRRAGWPACTPASRPRPGRPHTP 175
              E    PS   A    PS  PS  P  E      L P R   P   PA  P P RP  P
Sbjct: 2787 GSELVPPPSG-GALGSPPSFVPSRPPSLEPVPGLPLPPSRVQAPVDAPAPPPAPERPAPP 2845

Query: 174  SGQRAPVPRRLP*AP 130
                 P P   P  P
Sbjct: 2846 PAPERPAPPPAPERP 2860

 Score = 33.1 bits (74), Expect = 2.2
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 2/108 (1%)
 Frame = -1

Query: 486  PSRPPFPSSPSAAPAG*TALSCCRATRNKPTARSRRRAPRERSPAG*CRPQPRCEKWKAP 307
            P+ PP P  P+  PA           R  P     R AP    P    RP P     +  
Sbjct: 2833 PAPPPAPERPAPPPAPERPAPPPAPERPAPPPAPERPAP----PPAPERPAPPPAPERPA 2888

Query: 306  SSKAAFRCHPSPSSAPRRELAPR--RAGWPACTPASRPRPGRPHTPSG 169
            ++  +    P+PS+A   ++AP   R G     P+ R +PG P  P+G
Sbjct: 2889 TAVQSGSKIPAPSNALVGQVAPALLRRG-----PSPRGKPGAPARPTG 2931

>ref|NP_294202.1| penicillin-binding protein 1 [Deinococcus radiodurans]
            gi|7473266|pir||B75514 penicillin-binding protein 1 -
            Deinococcus radiodurans  (strain R1)
            gi|6458167|gb|AAF10059.1|AE001907_5 penicillin-binding
            protein 1 [Deinococcus radiodurans]
          Length = 873

 Score = 47.8 bits (112), Expect = 9e-05
 Identities = 38/123 (30%), Positives = 52/123 (41%), Gaps = 4/123 (3%)
 Frame = -1

Query: 495  PGVPSRPPFPSSPSAAPAG*TALSCCRATRNKPTARSRRRAPRERSPAG*CRPQ----PR 328
            P   + P  P   +  PAG +     R TR       R+ +PR   P+  CRP+    P 
Sbjct: 725  PPAVTAPEPPQPATTTPAGRSPAPLRRRTRR---TLPRQTSPRRALPSRTCRPRRPLSPP 781

Query: 327  CEKWKAPSSKAAFRCHPSPSSAPRRELAPRRAGWPACTPASRPRPGRPHTPSGQRAPVPR 148
              + +  +++ A R   SP SA R    PRR     C    RP   RP TP G+     R
Sbjct: 782  PRRPRPGATRRANRRRTSPPSATRCPTCPRRR-LSRCPATPRPLSRRPVTPPGRPFQARR 840

Query: 147  RLP 139
            R+P
Sbjct: 841  RIP 843

>ref|NP_601191.1| translation initiation factor 2 [Corynebacterium glutamicum ATCC
           13032] gi|21324755|dbj|BAB99378.1| Translation
           initiation factor 2 (GTPase) [Corynebacterium glutamicum
           ATCC 13032]
          Length = 1004

 Score = 47.0 bits (110), Expect = 1e-04
 Identities = 35/115 (30%), Positives = 52/115 (44%), Gaps = 2/115 (1%)
 Frame = -1

Query: 495 PGVPSRPPFPSSPSAAPAG*TALSCCRATRNKPTARSRRRAP-RERSPAG*CRPQPRCEK 319
           P  P+  P P++PSAA A     +     + KP A ++  AP +  +PA     +     
Sbjct: 89  PAAPAAKPAPAAPSAASAAKPGAAPKPGVQAKPAAAAKPGAPAKPAAPAAPSAAKSGSAP 148

Query: 318 WKAPSSKAAFRCHPSPSSAPRRELAPRRAGWPACTPASRPRP-GRPHTPSGQRAP 157
             A ++K AF   P+P  A ++     + G  A  P   PRP G+P    G RAP
Sbjct: 149 KPAAAAKPAF-SGPTPGDAAKKAEPAAKPGAEAPRPGGMPRPMGKPAPKPGARAP 202

 Score = 44.7 bits (104), Expect = 7e-04
 Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 13/130 (10%)
 Frame = -1

Query: 495 PGVPSRPPFPSSPSAAPAG*TALSCC-------------RATRNKPTARSRRRAPRERSP 355
           PG P++P  P++PSAA +G                     A + +P A+    APR   P
Sbjct: 127 PGAPAKPAAPAAPSAAKSGSAPKPAAAAKPAFSGPTPGDAAKKAEPAAKPGAEAPR---P 183

Query: 354 AG*CRPQPRCEKWKAPSSKAAFRCHPSPSSAPRRELAPRRAGWPACTPASRPRPGRPHTP 175
            G   P+P  +    P ++A    +   S+      APR  G P   P   PRPG    P
Sbjct: 184 GG--MPRPMGKPAPKPGARAPRVANNPFSTGGGERPAPRPGGGP--RPGGGPRPGGGPRP 239

Query: 174 SGQRAPVPRR 145
            GQ  P  +R
Sbjct: 240 QGQGRPGGQR 249

 Score = 35.0 bits (79), Expect = 0.59
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
 Frame = -1

Query: 408 RNKPTARSRRRAPRERSPAG*CRPQPRCE-KWKAPSSKAAFRCHPSPSSAPRRELAPRRA 232
           ++   A+     P    PA    P+P    K  AP++K A    PS +SA +   AP+  
Sbjct: 58  KSDTAAKPAAAKPAAPKPAASAAPKPGAPAKPAAPAAKPA-PAAPSAASAAKPGAAPKPG 116

Query: 231 GWPACTPASRPRPGRPHTPSGQRAPVPRRLP*APRKALA 115
                 PA+  +PG P  P+   AP   +   AP+ A A
Sbjct: 117 --VQAKPAAAAKPGAPAKPAAPAAPSAAKSGSAPKPAAA 153

 Score = 34.3 bits (77), Expect = 1.0
 Identities = 32/89 (35%), Positives = 38/89 (41%), Gaps = 1/89 (1%)
 Frame = -1

Query: 336 QPRCEKWKAPSSKAAFRCHPSPSSAPRRELAPRRAGWPAC-TPASRPRPGRPHTPSGQRA 160
           +P   K  AP  K A    P P  AP +  AP     PA  + AS  +PG    P  Q  
Sbjct: 64  KPAAAKPAAP--KPAASAAPKPG-APAKPAAPAAKPAPAAPSAASAAKPGAAPKPGVQAK 120

Query: 159 PVPRRLP*APRKALAHRAEAQARSR*SAP 73
           P     P AP K  A  A + A+S  SAP
Sbjct: 121 PAAAAKPGAPAKPAAPAAPSAAKSG-SAP 148

>ref|NP_492875.2| pre-mRNA splicing SR protein related (68.2 kD) (rsr-1)
           [Caenorhabditis elegans] gi|19571645|emb|CAB04214.3| C.
           elegans RSR-1 protein (corresponding sequence F28D9.1)
           [Caenorhabditis elegans]
          Length = 601

 Score = 47.0 bits (110), Expect = 1e-04
 Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
 Frame = -1

Query: 495 PGVPSRPPFPSSPSAAPAG*TALSCCRA-TRNKPTARSRRRAPRERSPAG*CRPQPRCEK 319
           P     PP P    +      A    R+ +++K  A  RRR+P +   A   R  P   K
Sbjct: 415 PSASKSPPAPKRAKSRSKSPPAPRRRRSPSQSKSPAPRRRRSPSKSPQAPRRRRSPSGSK 474

Query: 318 WKAPSSKAAFRCHPSPSSAPRRELAPRRAGWPACTPASR---PRPGRPHTPSGQRAPVPR 148
            ++P  + +    P    +P+R  +PRR   P+ +  SR   P P RP   S Q+APV  
Sbjct: 475 SRSPRRRRSPAAAPRRRQSPQRRRSPRRRRSPSSSSRSRSPPPPPRRPRQDSEQQAPVAV 534

Query: 147 RLP 139
           + P
Sbjct: 535 KSP 537

 Score = 46.2 bits (108), Expect = 3e-04
 Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
 Frame = -1

Query: 417 RATRNKPTARSRRRAPRERSPAG*CRPQPRCEKWKAPSSKAAFRCHPSPSSAPRRELAPR 238
           R  R+   ++S   A R RSP+    P P+  K ++ S  A  R   SPS++     AP+
Sbjct: 303 RRRRSPSASKSPPPARRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSPSASKSPPPAPK 362

Query: 237 RAGWPACTPASR-----------PRPGRPHTPSGQRAPVPRR-LP*A-----PRKALAHR 109
           RA   + +P +R           P P R  +PS  R+P P+R +P A     P  + +  
Sbjct: 363 RAKSRSKSPPARRRRSPSASKSPPAPRRRRSPSKSRSPAPKREIPPARRRRSPSASKSPP 422

Query: 108 AEAQARSR*SAP 73
           A  +A+SR  +P
Sbjct: 423 APKRAKSRSKSP 434

 Score = 44.7 bits (104), Expect = 7e-04
 Identities = 47/154 (30%), Positives = 69/154 (44%), Gaps = 23/154 (14%)
 Frame = -1

Query: 477 PPFPS----SPSAAPAG*TALSCCRATRNKPTARSRRRAPRERSPAG*CRPQPRCEKWKA 310
           PP P+    SPSA+ +   A    ++    P AR RR     +SP     P PR  + ++
Sbjct: 341 PPAPARRRRSPSASKSPPPAPKRAKSRSKSPPARRRRSPSASKSP-----PAPR--RRRS 393

Query: 309 PSSKAAFRCHPSPSSAPRRELAP-RRAGWPACTPA------------SRPRPGRPHTPSG 169
           PS         S S AP+RE+ P RR   P+ + +            S P P R  +PS 
Sbjct: 394 PSK--------SRSPAPKREIPPARRRRSPSASKSPPAPKRAKSRSKSPPAPRRRRSPSQ 445

Query: 168 QRAPVPRR------LP*APRKALAHRAEAQARSR 85
            ++P PRR       P APR+    R+ + ++SR
Sbjct: 446 SKSPAPRRRRSPSKSPQAPRR---RRSPSGSKSR 476

EST assemble image

clone accession position 1 MXL008e03_r BP093443 1 516 2 HCL060b02_r AV642896 46 522

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