KCC002558A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002558A_C01 KCC002558A_c01
gagcgacatTACTGCTTCTCTCTTCTCTGTTGCTGAGGCGCCAACTCCAAGAGTATACAA
ATGTCGGACGTGTCGGATACTGCGCCGGATAAGTGGACTACTGAGCACGTCCTTGCATTC
CTTAAGCAGAATGGACTGGAAGCTATTTCTGCGGTGTTCCAGGAGAACGAGGTCACAGGC
CTCGACTTGATCCTGCTGACGGAGGGCGAGCTTAAGCACATGCTGGGCATCACCAACTTG
CAGGCGGCCAAGGTGAAGTCGCTGGTGAACGCGCTGGCGCCCAAGCCGGAGCCGGTGGAG
GGCGAGCCCGAGCCCATGGAGGAGGACGGCGCTGGCGCCCCGCTCAGCCCCAGCGAGACG
AGCGCCACCGCCGCGCGGGCCGCTGAGGCCGAGACTGACTTTAACGCCGCGGCGGTACCG
CGTGTGGCGGAGAGCGCGGAGCGGGAGGATCACGGCGGTGACGAGGAGGAGCAGGAGGAC
ATGGCGCGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002558A_C01 KCC002558A_c01
         (489 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||S51939 chitinase (EC 3.2.1.14) precursor - beet gi|488731|e...    56  2e-07
ref|ZP_00009817.1| COG2885: Outer membrane protein and related p...    56  2e-07
gb|AAH51192.1| Splicing factor proline/glutamine rich (polypyrim...    54  1e-06
gb|AAF25206.1| EBNA2-like protein [cercopithicine herpesvirus 15...    53  2e-06
gb|AAH27708.1| SFPQ protein [Homo sapiens]                             53  2e-06

>pir||S51939 chitinase (EC 3.2.1.14) precursor - beet gi|488731|emb|CAA55883.1|
           chitinase [Beta vulgaris subsp. vulgaris]
           gi|829258|emb|CAA56946.1| Chitinase [Beta vulgaris
           subsp. vulgaris]
          Length = 439

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 42/119 (35%), Positives = 45/119 (37%), Gaps = 1/119 (0%)
 Frame = -3

Query: 484 PCPPAPPRHRRDPPAPRSPPHAVP-PRR*SQSRPQRPARRWRSSRWG*AGRQRRPPPWAR 308
           P PP PP  R  PP PR PP   P PR      P+ P  R  + R         PPP  R
Sbjct: 71  PPPPRPPTPRPPPPTPRPPPPRPPTPRPPPPPTPRPPPPRPPTPR-------PPPPPTPR 123

Query: 307 ARPPPAPAWAPARSPATSPWPPASW*CPACA*ARPPSAGSSRGL*PRSPGTPQK*LPVH 131
             PPP P   P   P   P PP     P+     PPS  S     P  P  P    P H
Sbjct: 124 PPPPPTPRPPPPSPPTPRPPPPPP---PSPPTPSPPSPPSPEPPTPPEPTPPTPTPPTH 179

 Score = 51.2 bits (121), Expect = 7e-06
 Identities = 40/113 (35%), Positives = 42/113 (36%), Gaps = 1/113 (0%)
 Frame = -3

Query: 484 PCPPAPPRHRRD-PPAPRSPPHAVPPRR*SQSRPQRPARRWRSSRWG*AGRQRRPPPWAR 308
           P  P PPR     PP PR P    PP R    RP  P  R    R          PP  R
Sbjct: 48  PSRPTPPRPPTPRPPPPRPPTPRPPPPRPPTPRPPPPTPRPPPPR----------PPTPR 97

Query: 307 ARPPPAPAWAPARSPATSPWPPASW*CPACA*ARPPSAGSSRGL*PRSPGTPQ 149
             PPP P   P R P   P PP +   P     RPP         P SP TP+
Sbjct: 98  PPPPPTPRPPPPRPPTPRPPPPPTPRPPPPPTPRPP---------PPSPPTPR 141

>ref|ZP_00009817.1| COG2885: Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins
           [Rhodopseudomonas palustris]
          Length = 689

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 37/116 (31%), Positives = 47/116 (39%)
 Frame = -3

Query: 484 PCPPAPPRHRRDPPAPRSPPHAVPPRR*SQSRPQRPARRWRSSRWG*AGRQRRPPPWARA 305
           P P A P H   PP P +PP A PP     + P    +R              PPP   A
Sbjct: 76  PPPAAAPPHVAPPPPPPAPPRAAPPPPPPAAAPAPAPKRAEPPPPPPPSHSAPPPPPPHA 135

Query: 304 RPPPAPAWAPARSPATSPWPPASW*CPACA*ARPPSAGSSRGL*PRSPGTPQK*LP 137
            PPP PA  P+  P  +P    +   PA A  RPP+  +     P+  G P   +P
Sbjct: 136 APPPPPAPKPSAPPTAAPAERPAAPPPAAAPVRPPAPPAGEA--PQRRGPPPGAVP 189

 Score = 49.7 bits (117), Expect = 2e-05
 Identities = 41/107 (38%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
 Frame = -3

Query: 469 PPRHRRDPP--APRSPPHAVPPRR*SQSRPQRPARRWRSSRWG*AGRQRRPPPWARARPP 296
           PP  RR PP  AP +PP+A  P     + P            G A R+  PPP A A PP
Sbjct: 211 PPGERRGPPPGAPGTPPNATAP---GMTPPP-----------GEAPRRGPPPPPAAANPP 256

Query: 295 P--APAWAPARSPATSPWPPASW*CPACA*ARPPSAGSSRGL*PRSP 161
           P  AP  AP+ +P  +P  PA+   PA A    PS    RG  P +P
Sbjct: 257 PAAAPTPAPSAAPQAAPTSPANPSGPAVAPVARPS--GERGPQPGAP 301

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 43/118 (36%), Positives = 48/118 (40%), Gaps = 9/118 (7%)
 Frame = -3

Query: 478 PPAPPRHRRDPPAPRSPPHAVPPRR*SQSRPQRPARRWRSSRWG*AGRQRRPPPWARARP 299
           PP PP     PP P  PPHA PP      +P  P           A R   PPP A    
Sbjct: 118 PPPPPPSHSAPPPP--PPHAAPPPP-PAPKPSAPPTA------APAERPAAPPPAAAPVR 168

Query: 298 PPAPAWAPA---RSPATSPWPPASW*CPACA--*ARPPSA----GSSRGL*PRSPGTP 152
           PPAP    A   R P     PP +    A A   A+P +A    G  RG  P +PGTP
Sbjct: 169 PPAPPAGEAPQRRGPPPGAVPPNAVPPNAAAPDAAKPDAAKQPPGERRGPPPGAPGTP 226

 Score = 42.4 bits (98), Expect = 0.003
 Identities = 40/144 (27%), Positives = 50/144 (33%), Gaps = 32/144 (22%)
 Frame = -3

Query: 487 APCPPAPPR----------------------------HRRDPPAPRSPPHAVPPRR*SQS 392
           AP P APP                              RR PP    PP+AVPP   +  
Sbjct: 142 APKPSAPPTAAPAERPAAPPPAAAPVRPPAPPAGEAPQRRGPPPGAVPPNAVPPNAAAPD 201

Query: 391 RPQRPARRWRSSRWG*AGRQRRPPPWARARPPPAPAWA----PARSPATSPWPPASW*CP 224
             +  A +         G +R PPP A   PP A A      P  +P   P PP +   P
Sbjct: 202 AAKPDAAKQP------PGERRGPPPGAPGTPPNATAPGMTPPPGEAPRRGPPPPPAAANP 255

Query: 223 ACA*ARPPSAGSSRGL*PRSPGTP 152
             A A  P+  ++    P SP  P
Sbjct: 256 PPAAAPTPAPSAAPQAAPTSPANP 279

 Score = 39.7 bits (91), Expect = 0.020
 Identities = 42/141 (29%), Positives = 52/141 (36%)
 Frame = -3

Query: 487 APCPPAPPRHRRDPPAPRSPPHAVPPRR*SQSRPQRPARRWRSSRWG*AGRQRRPPPWAR 308
           AP P         PP PR  P   PP+    + P  PA    ++    A     P P   
Sbjct: 44  APAPSEEKAKEAPPPGPR--PAPAPPKAAPSAPPPPPA----AAPPHVAPPPPPPAPPRA 97

Query: 307 ARPPPAPAWAPARSPATSPWPPASW*CPACA*ARPPSAGSSRGL*PRSPGTPQK*LPVHS 128
           A PPP PA APA +P  +  PP      +     PP A       P  P  P+   P  +
Sbjct: 98  APPPPPPAAAPAPAPKRAEPPPPPPPSHSAPPPPPPHAA------PPPPPAPKPSAPPTA 151

Query: 127 A*GMQGRAQ*STYPAQYPTRP 65
           A   +  A     PA  P RP
Sbjct: 152 APAERPAA---PPPAAAPVRP 169

 Score = 38.5 bits (88), Expect = 0.044
 Identities = 35/110 (31%), Positives = 40/110 (35%)
 Frame = -3

Query: 487 APCPPAPPRHRRDPPAPRSPPHAVPPRR*SQSRPQRPARRWRSSRWG*AGRQRRPPPWAR 308
           A  P A P   R P  P +P    PPR   Q+ P  P           AG    PPP   
Sbjct: 283 AVAPVARPSGERGPQ-PGAPAGGPPPR--PQAGPGAPG----------AGPAVAPPPGQP 329

Query: 307 ARPPPAPAWAPARSPATSPWPPASW*CPACA*ARPPSAGSSRGL*PRSPG 158
              PP P   PA      P PP     PA     PP+    + L P +PG
Sbjct: 330 QPVPPQPGQPPAGPAVAPPAPPP----PAVTAPIPPAPPPPQALTPIAPG 375

 Score = 37.7 bits (86), Expect = 0.075
 Identities = 44/137 (32%), Positives = 53/137 (38%), Gaps = 20/137 (14%)
 Frame = -3

Query: 484 PCPPA---PPRHRRDPPAPRSPPHAVPPRR*SQSRPQRPARRWRSSRWG*AGRQRRPPPW 314
           P PPA   PP      PAP + P A P    S + P  PA    +   G    +R P P 
Sbjct: 247 PPPPAAANPPPAAAPTPAPSAAPQAAPT---SPANPSGPAVAPVARPSG----ERGPQPG 299

Query: 313 ARA-RPPPAP---AWAPARSPATSP-------------WPPASW*CPACA*ARPPSAGSS 185
           A A  PPP P     AP   PA +P              PPA    PA A   PP    +
Sbjct: 300 APAGGPPPRPQAGPGAPGAGPAVAPPPGQPQPVPPQPGQPPAG---PAVAPPAPPPPAVT 356

Query: 184 RGL*PRSPGTPQK*LPV 134
             + P +P  PQ   P+
Sbjct: 357 API-PPAPPPPQALTPI 372

 Score = 35.4 bits (80), Expect = 0.37
 Identities = 30/86 (34%), Positives = 35/86 (39%), Gaps = 5/86 (5%)
 Frame = -3

Query: 487 APCPPAPPRHRRDPPAPRSPPHAVPPRR*SQSRPQRPARRWRSSRWG*AGRQRRPPPWAR 308
           AP    PPR +  P AP + P   PP    Q  P +P +       G A     PPP A 
Sbjct: 300 APAGGPPPRPQAGPGAPGAGPAVAPPPGQPQPVPPQPGQ----PPAGPAVAPPAPPPPAV 355

Query: 307 ARP-PPAP----AWAPARSPATSPWP 245
             P PPAP    A  P    A +P P
Sbjct: 356 TAPIPPAPPPPQALTPIAPGAQAPGP 381

 Score = 33.9 bits (76), Expect = 1.1
 Identities = 36/111 (32%), Positives = 43/111 (38%), Gaps = 2/111 (1%)
 Frame = -3

Query: 478 PP--APPRHRRDPPAPRSPPHAVPPRR*SQSRPQRPARRWRSSRWG*AGRQRRPPPWARA 305
           PP  AP R    PPA  +PP A  P     + PQ  A    ++  G A      P   R 
Sbjct: 237 PPGEAPRRGPPPPPAAANPPPAAAPTPAPSAAPQ-AAPTSPANPSGPAVAPVARPSGERG 295

Query: 304 RPPPAPAWAPARSPATSPWPPASW*CPACA*ARPPSAGSSRGL*PRSPGTP 152
             P APA  P   P   P  P +   PA A    P  G  + + P  PG P
Sbjct: 296 PQPGAPAGGPPPRPQAGPGAPGAG--PAVA----PPPGQPQPV-PPQPGQP 339

>gb|AAH51192.1| Splicing factor proline/glutamine rich (polypyrimidine tract
           binding protein associated) [Homo sapiens]
          Length = 707

 Score = 53.5 bits (127), Expect = 1e-06
 Identities = 34/111 (30%), Positives = 45/111 (39%)
 Frame = -3

Query: 484 PCPPAPPRHRRDPPAPRSPPHAVPPRR*SQSRPQRPARRWRSSRWG*AGRQRRPPPWARA 305
           P PP PP  ++  P P+ PP   PP       PQ               +Q++PPP  + 
Sbjct: 59  PIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQ-------------PHQQQQPPPPPQD 105

Query: 304 RPPPAPAWAPARSPATSPWPPASW*CPACA*ARPPSAGSSRGL*PRSPGTP 152
              P  A  P  +P     PPAS   P    A PP++G+  G  P    TP
Sbjct: 106 SSKPVVAQGPGPAPGVGSTPPASSSAPP---ATPPTSGAPPGSGPGPTPTP 153

 Score = 34.7 bits (78), Expect = 0.64
 Identities = 36/123 (29%), Positives = 45/123 (36%), Gaps = 13/123 (10%)
 Frame = -3

Query: 478 PPAPPRHRRDP-----PAPRSPPHAVPPRR*SQSRPQRPARRWRSSRWG*AGRQRRPPPW 314
           PP PP+    P     P P     + PP   S + P  P         G  G    PPP 
Sbjct: 99  PPPPPQDSSKPVVAQGPGPAPGVGSTPPAS-SSAPPATPPTSGAPPGSG-PGPTPTPPPA 156

Query: 313 ARARPPPAPAWAPARS--PATSPW------PPASW*CPACA*ARPPSAGSSRGL*PRSPG 158
             + PP AP   P  S  P T P       PPA+   P     + P  G  +G   + PG
Sbjct: 157 VTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKG--GKMPG 214

Query: 157 TPQ 149
            P+
Sbjct: 215 GPK 217

>gb|AAF25206.1| EBNA2-like protein [cercopithicine herpesvirus 15]
           gi|18025470|gb|AAK95414.1| EBNA-2 [cercopithicine
           herpesvirus 15]
          Length = 605

 Score = 53.1 bits (126), Expect = 2e-06
 Identities = 46/144 (31%), Positives = 54/144 (36%), Gaps = 25/144 (17%)
 Frame = -3

Query: 487 APCPPAPPRHRRDPPAPRSPPHAVPPRR*SQSRPQRPARRWRSSRWG*AGRQRRPPPWAR 308
           APC P PP+H   P AP  P         S  RP +P   +R         Q   PPW  
Sbjct: 225 APCRPPPPQHMPPPSAPWRP---------SPPRPPQPHWAYRPHY-----TQHTQPPWPP 270

Query: 307 ARPPPAPAWAPAR---------SPATSPW----------PPASW-*CPACA*ARPPSAGS 188
            RPPP    AP R         +P  +PW          PPA W   P    A PP+   
Sbjct: 271 YRPPPTKHQAPPRVPWRPSPVQAPPRAPWGPSPTKQQAPPPAPWGPSPTKQQAPPPAPPL 330

Query: 187 SRGL*PRSP-----GTPQK*LPVH 131
           +    P  P      TP K +PVH
Sbjct: 331 TSPEHPDPPQSTPHPTPPKHIPVH 354

 Score = 33.9 bits (76), Expect = 1.1
 Identities = 37/110 (33%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
 Frame = -3

Query: 478 PPAPPRHRRDPPAPRSPPHAVPPRR*SQSRPQRPARRWRSSRWG*AGRQRR-----PPPW 314
           PPAPP     PP  RS       RR  +SR    A++ +    G A  + R      PP 
Sbjct: 417 PPAPPGPVWWPPVTRS---KASKRRKGKSRAPSRAQKGKGKGKGKAKARARLGQESTPPQ 473

Query: 313 ARARPPPAPAWAPARSPATSPWPPASW*CPACA*ARPPSAGSSRGL*PRS 164
           A   P P P  +P+  PA SP  P +   P  A    P+ G S  L  RS
Sbjct: 474 AGPVPSPQPTPSPS-MPALSPAIPLAS-NPVRAPNSSPTPGPSEALPARS 521

 Score = 33.1 bits (74), Expect = 1.9
 Identities = 23/73 (31%), Positives = 28/73 (37%), Gaps = 4/73 (5%)
 Frame = -3

Query: 445 PAPRSPPHAVPPRR*SQSRPQ--RPARRWRSSR--WG*AGRQRRPPPWARARPPPAPAWA 278
           P P +PP A P        PQ   P       +  W          PWA  RPPP P   
Sbjct: 177 PPPSTPPRAAPSYLQLPQEPQTLNPGNHTAHPQTPWMPPPSHHTQSPWAPCRPPP-PQHM 235

Query: 277 PARSPATSPWPPA 239
           P   P ++PW P+
Sbjct: 236 P---PPSAPWRPS 245

 Score = 32.0 bits (71), Expect = 4.1
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = -3

Query: 487 APCPPAPPRHRRDPPAPRSPPHAVPPRR*SQSRPQRPARR 368
           AP PP PP     PP P  PP  +PP      +P  P RR
Sbjct: 64  APPPPPPP-----PPLPPPPPPPLPPPPPPPVQPPPPERR 98

>gb|AAH27708.1| SFPQ protein [Homo sapiens]
          Length = 525

 Score = 53.1 bits (126), Expect = 2e-06
 Identities = 34/111 (30%), Positives = 45/111 (39%)
 Frame = -3

Query: 484 PCPPAPPRHRRDPPAPRSPPHAVPPRR*SQSRPQRPARRWRSSRWG*AGRQRRPPPWARA 305
           P PP PP  ++  P P+ PP   PP       PQ               +Q++PPP  + 
Sbjct: 59  PIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQ-------------PHQQQQPPPPPQD 105

Query: 304 RPPPAPAWAPARSPATSPWPPASW*CPACA*ARPPSAGSSRGL*PRSPGTP 152
              P  A  P  +P     PPAS   P    A PP++G+  G  P    TP
Sbjct: 106 SSKPVVAQGPGPAPGVGSAPPASSSAPP---ATPPTSGAPPGSGPGPTPTP 153

 Score = 34.7 bits (78), Expect = 0.64
 Identities = 36/123 (29%), Positives = 45/123 (36%), Gaps = 13/123 (10%)
 Frame = -3

Query: 478 PPAPPRHRRDP-----PAPRSPPHAVPPRR*SQSRPQRPARRWRSSRWG*AGRQRRPPPW 314
           PP PP+    P     P P     + PP   S + P  P         G  G    PPP 
Sbjct: 99  PPPPPQDSSKPVVAQGPGPAPGVGSAPPAS-SSAPPATPPTSGAPPGSG-PGPTPTPPPA 156

Query: 313 ARARPPPAPAWAPARS--PATSPW------PPASW*CPACA*ARPPSAGSSRGL*PRSPG 158
             + PP AP   P  S  P T P       PPA+   P     + P  G  +G   + PG
Sbjct: 157 VTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKG--GKMPG 214

Query: 157 TPQ 149
            P+
Sbjct: 215 GPK 217



EST assemble image


clone accession position
1 HCL060f01_r AV642924 1 489
2 HCL058e08_r AV642813 10 414




Chlamydomonas reinhardtii
Kazusa DNA Research Institute