Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002557A_C01 KCC002557A_c01
(534 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_504252.1| COLlagen structural gene (col-139) [Caenorhabdi... 41 0.011
emb|CAB52754.1| hyperpolarization-activated channel type 4 [Homo... 39 0.043
ref|NP_005468.1| hyperpolarization activated cyclic nucleotide-g... 39 0.043
gb|AAL36453.1|AF162331_1 circumsporozoite protein [Plasmodium vi... 37 0.12
ref|NP_035986.2| odd Oz/ten-m homolog 2; teneurin 2 [Mus musculu... 37 0.12
>ref|NP_504252.1| COLlagen structural gene (col-139) [Caenorhabditis elegans]
gi|7503193|pir||T29731 hypothetical protein F41F3.4 -
Caenorhabditis elegans gi|1280073|gb|AAA97982.1|
Hypothetical protein F41F3.4 [Caenorhabditis elegans]
Length = 310
Score = 40.8 bits (94), Expect = 0.011
Identities = 26/77 (33%), Positives = 31/77 (39%), Gaps = 2/77 (2%)
Frame = +2
Query: 254 ASRARKGGSISSCDGRGIPRR--GQLCNPRAVPQGRPVPPGARGAHPQPQHHNPPPVPCD 427
A R K G +C G P + G C+P VP +P PPG G +P H P P
Sbjct: 121 AGRPGKPGRPGACGNHGNPGKPTGLPCDPVTVPPCKPCPPGPAG---EPGHDGAPGAPGK 177
Query: 428 VQRAGTGAGH*PAGVSG 478
G G G G G
Sbjct: 178 PGAPGVGGGSGAPGAPG 194
>emb|CAB52754.1| hyperpolarization-activated channel type 4 [Homo sapiens]
Length = 1203
Score = 38.9 bits (89), Expect = 0.043
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 239 LGGSGASRARKGGSISSCDGRGI-PRRGQLCNPRAVPQGRPVPPGARGAHPQPQHHNPPP 415
+ G G GGS+SS D + P + +P+A Q P PPGARG P+H PPP
Sbjct: 904 IAGFGHFHKALGGSLSSSDSPLLTPLQPGARSPQAA-QPSPAPPGARGGLGLPEHFLPPP 962
>ref|NP_005468.1| hyperpolarization activated cyclic nucleotide-gated potassium ch
[Homo sapiens] gi|4775353|emb|CAB42604.1|
hyperpolarization-activated cyclic nucleotide gated
cation channel hHCN4 [Homo sapiens]
Length = 1203
Score = 38.9 bits (89), Expect = 0.043
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 239 LGGSGASRARKGGSISSCDGRGI-PRRGQLCNPRAVPQGRPVPPGARGAHPQPQHHNPPP 415
+ G G GGS+SS D + P + +P+A Q P PPGARG P+H PPP
Sbjct: 904 IAGFGHFHKALGGSLSSSDSPLLTPLQPGARSPQAA-QPSPAPPGARGGLGLPEHFLPPP 962
>gb|AAL36453.1|AF162331_1 circumsporozoite protein [Plasmodium vinckei lentum]
Length = 464
Score = 37.4 bits (85), Expect = 0.12
Identities = 22/57 (38%), Positives = 27/57 (46%)
Frame = +2
Query: 242 GGSGASRARKGGSISSCDGRGIPRRGQLCNPRAVPQGRPVPPGARGAHPQPQHHNPP 412
GG G R +GG + GR P +G NP+ GRP PP A+PQ PP
Sbjct: 271 GGDG--RGAQGGDANPQGGRPAPPQGNDANPQG---GRPAPPQGNDANPQGGRPAPP 322
Score = 31.6 bits (70), Expect = 6.8
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 269 KGGSISSCDGRGIPRRGQLCNPRAVPQGRPVPPGARGAHPQPQHHNPP 412
+G + GR P +G NP+ GRP PP A+PQ PP
Sbjct: 308 QGNDANPQGGRPAPPQGNDANPQG---GRPAPPQGNDANPQGGRPAPP 352
Score = 31.2 bits (69), Expect = 8.9
Identities = 19/55 (34%), Positives = 25/55 (44%), Gaps = 4/55 (7%)
Frame = +2
Query: 269 KGGSISSCDGRGIPRRGQLCNPR----AVPQGRPVPPGARGAHPQPQHHNPPPVP 421
+G + GR P +G NP+ A PQG PG R A PQ ++N P
Sbjct: 323 QGNDANPQGGRPAPPQGNDANPQGGRPAPPQGNNNQPGGRPAPPQGNNNNNNEAP 377
>ref|NP_035986.2| odd Oz/ten-m homolog 2; teneurin 2 [Mus musculus]
gi|4760778|dbj|BAA77397.1| Ten-m2 [Mus musculus]
Length = 2764
Score = 37.4 bits (85), Expect = 0.12
Identities = 29/112 (25%), Positives = 40/112 (34%), Gaps = 12/112 (10%)
Frame = +2
Query: 158 FCCDPAVLLAPWI*QLASEARSD--------HDAKLGGSGASRARKGGSISSCDGRGIPR 313
+C D +L + S+A SD H +L G G R G S +
Sbjct: 96 YCSDMGILHQGYSLSTGSDADSDTEGGMSPEHAIRLWGRGIKSRRSSGLSSRENSALTLT 155
Query: 314 RGQLCNPRAVPQGRPVPPGARGA----HPQPQHHNPPPVPCDVQRAGTGAGH 457
N GRP+PP + + P HNPPPV C + + H
Sbjct: 156 DSDNENKSDDDNGRPIPPTSSSSLLPSAQLPSSHNPPPVSCQMPLLDSNTSH 207
