KCC002550A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002550A_C01 KCC002550A_c01
cagtcgcagcgacaggcggcgcggcagtgctcgccaagttgcgcagcgggcagccaaacg
ccgactcagccgagtcgctgACTGTGGCCGCGGCGGCAGCCGCACCTGAGGCGGCTGCGA
AGCAGGAGAACACGGCCGCCAAGTCGGCACAGCCTCCCGCAGAGCCCGCCAAGCCGCCCG
TCACTTTTGCCTACGCCAGCCAGACGGGTACGGGCGAGGAGATCGCACGCAACCTGGCCG
CGGAAGCCATTCAGAGGGGCTACAAGGCCATCTGCGCGCCGCTCAACGAGCTAGGATTCG
CCGCCATCACACCCTCTCGCACGCCCGTGCTCGTGGTTATCGCCTCCTCCACTGGCGACG
GTGACCCGCCGGAGAACGCCACAAACTTCTTTGTGGCGCTTCGCAAGAAGCAGGACAAGC
CCGCGCCGCTGGCTGGCGTGCGGTACACGCTGCTGGGCCTGTGCGACTCCAACTACACAC
GCTTCATGGGCGCCCCCCGGGCGATCAAGAGCCGGCTGGCGGAGCTGGGCGCGGCCGAGT
TCTACCCGTGCGCGGAGGCGGACGAGGTCGACGGCATCGAGAGCGTTGTGGATCGGTGGA
CTGCAGGGATATGGGCCGCCATCGCGGCGGCCACTGCGGCGGGCCAGGACGCTATGGCGG
CGGTCAGCATCGATGCACCATCGGCCACTGCTGCCGTGAAGCCGGCTGCGGTGAAGGTCG
GGCCCTCCGAGAGCGAAATTGCGGCGGCAGCTGCAGCTGCGGCTGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002550A_C01 KCC002550A_c01
         (767 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAH25942.1| Mtrr protein [Mus musculus]                            103  3e-21
ref|NP_766068.1| 5-methyltetrahydrofolate-homocysteine methyltra...   102  9e-21
gb|AAH54816.1| MTRR protein [Homo sapiens]                            100  4e-20
sp|Q9UBK8|MTRR_HUMAN Methionine synthase reductase, mitochondria...   100  4e-20
ref|NP_076915.1| methionine synthase reductase isoform 2; [methi...   100  4e-20

>gb|AAH25942.1| Mtrr protein [Mus musculus]
          Length = 696

 Score =  103 bits (257), Expect = 3e-21
 Identities = 65/181 (35%), Positives = 96/181 (52%), Gaps = 5/181 (2%)
 Frame = +3

Query: 192 YASQTGTGEEIARNLAAEAIQRGYKAICAPLNELGFAAITPSRTPVLVVIASSTGDGDPP 371
           YA+Q G  + IA  ++ +A+  G+ A    ++E     +     P LV++ S+TG GDPP
Sbjct: 8   YATQRGQAKAIAEEISEQAVSHGFSADLHCISESEKYDLKTETGP-LVMVVSTTGTGDPP 66

Query: 372 ENATNFFVALRKKQDKPAPLAGVRYTLLGLCDSNYTRFMGAPRAIKSRLAELGAAEFYPC 551
           + A  F   +  K       A +RY LLGL DS YT F    + I  RL ELGA  FY  
Sbjct: 67  DTARKFVKEIHNKTLPTDYFAHLRYGLLGLGDSEYTYFCNGGKVIDKRLQELGAQRFYDT 126

Query: 552 AEADEVDGIESVVDRWTAGIWAAIAA--ATAAGQDAMA---AVSIDAPSATAAVKPAAVK 716
             AD+  G+E VV+ W  G+WAA+     +  GQ+ M+   + + DAP +T A+KP  + 
Sbjct: 127 GHADDCVGLELVVEPWIDGLWAALTKHFKSLGGQENMSDTLSRASDAPLST-AMKPELLH 185

Query: 717 V 719
           +
Sbjct: 186 I 186

>ref|NP_766068.1| 5-methyltetrahydrofolate-homocysteine methyltransferase reductase
           [Mus musculus] gi|26324570|dbj|BAC26039.1| unnamed
           protein product [Mus musculus]
          Length = 696

 Score =  102 bits (253), Expect = 9e-21
 Identities = 64/181 (35%), Positives = 96/181 (52%), Gaps = 5/181 (2%)
 Frame = +3

Query: 192 YASQTGTGEEIARNLAAEAIQRGYKAICAPLNELGFAAITPSRTPVLVVIASSTGDGDPP 371
           YA+Q G  + IA  ++ +A+  G+ A    ++E     +     P LV++ S+TG GDPP
Sbjct: 8   YATQRGQAKAIAEEISEQAVSHGFSADLHCISESEKYDLKTETGP-LVMVVSTTGTGDPP 66

Query: 372 ENATNFFVALRKKQDKPAPLAGVRYTLLGLCDSNYTRFMGAPRAIKSRLAELGAAEFYPC 551
           + A  F   +  K       A ++Y LLGL DS YT F    + I  RL ELGA  FY  
Sbjct: 67  DTARKFVKEIHNKTLPTDYFAHLQYGLLGLGDSEYTYFCNGGKVIDKRLQELGAQRFYDT 126

Query: 552 AEADEVDGIESVVDRWTAGIWAAIAA--ATAAGQDAMA---AVSIDAPSATAAVKPAAVK 716
             AD+  G+E VV+ W  G+WAA+     +  GQ+ M+   + + DAP +T A+KP  + 
Sbjct: 127 GHADDCVGLELVVEPWIDGLWAALTKHFKSLGGQENMSDTLSRASDAPLST-AMKPELLH 185

Query: 717 V 719
           +
Sbjct: 186 I 186

>gb|AAH54816.1| MTRR protein [Homo sapiens]
          Length = 715

 Score = 99.8 bits (247), Expect = 4e-20
 Identities = 63/175 (36%), Positives = 91/175 (52%), Gaps = 5/175 (2%)
 Frame = +3

Query: 192 YASQTGTGEEIARNLAAEAIQRGYKAICAPLNELGFAAITPSRTPVLVVIASSTGDGDPP 371
           YA+Q G  + IA  +  +A+  G+ A    ++E     +     P LVV+ S+TG GDPP
Sbjct: 25  YATQQGQAKAIAEEICEQAVVHGFSADLHCISESDKYDLKTETAP-LVVVVSTTGTGDPP 83

Query: 372 ENATNFFVALRKKQDKPAPLAGVRYTLLGLCDSNYTRFMGAPRAIKSRLAELGAAEFYPC 551
           + A  F   ++ +       A +RY LLGL DS YT F    + I  RL ELGA  FY  
Sbjct: 84  DTARKFVKEIQNQTLPVDFFAHLRYGLLGLGDSEYTYFCNGGKIIDKRLQELGARHFYDT 143

Query: 552 AEADEVDGIESVVDRWTAGIWAAIAA--ATAAGQDAMAA---VSIDAPSATAAVK 701
             AD+  G+E VV+ W AG+W A+     ++ GQ+ ++    V+  A S T  VK
Sbjct: 144 GHADDCVGLELVVEPWIAGLWPALRKHFRSSRGQEEISGALPVASPASSRTDLVK 198

>sp|Q9UBK8|MTRR_HUMAN Methionine synthase reductase, mitochondrial precursor (MSR)
          Length = 725

 Score = 99.8 bits (247), Expect = 4e-20
 Identities = 62/185 (33%), Positives = 94/185 (50%), Gaps = 2/185 (1%)
 Frame = +3

Query: 192 YASQTGTGEEIARNLAAEAIQRGYKAICAPLNELGFAAITPSRTPVLVVIASSTGDGDPP 371
           YA+Q G  + IA  +  +A+  G+ A    ++E     +     P LVV+ S+TG GDPP
Sbjct: 35  YATQQGQAKAIAEEICEQAVVHGFSADLHCISESDKYDLKTETAP-LVVVVSTTGTGDPP 93

Query: 372 ENATNFFVALRKKQDKPAPLAGVRYTLLGLCDSNYTRFMGAPRAIKSRLAELGAAEFYPC 551
           + A  F   ++ +       A +RY LLGL DS YT F    + I  RL ELGA  FY  
Sbjct: 94  DTARKFVKEIQNQTLPVDFFAHLRYGLLGLGDSEYTYFCNGGKIIDKRLQELGARHFYDT 153

Query: 552 AEADEVDGIESVVDRWTAGIWAAIAA--ATAAGQDAMAAVSIDAPSATAAVKPAAVKVGP 725
             AD+  G+E VV+ W AG+W A+     ++ GQ+ ++        A     PA+++   
Sbjct: 154 GHADDCVGLELVVEPWIAGLWPALRKHFRSSRGQEEIS-------GALPVASPASLRTDL 206

Query: 726 SESEI 740
            +SE+
Sbjct: 207 VKSEL 211

>ref|NP_076915.1| methionine synthase reductase isoform 2; [methionine
           synthase]-cobalamin methyltransferase (cob(II)alamin
           reducing) [Homo sapiens]
           gi|6561339|gb|AAF16876.1|AF121214_1 methionine synthase
           reductase [Homo sapiens] gi|6572540|gb|AAF17303.1|
           methionine synthase reductase [Homo sapiens]
          Length = 725

 Score = 99.8 bits (247), Expect = 4e-20
 Identities = 62/185 (33%), Positives = 94/185 (50%), Gaps = 2/185 (1%)
 Frame = +3

Query: 192 YASQTGTGEEIARNLAAEAIQRGYKAICAPLNELGFAAITPSRTPVLVVIASSTGDGDPP 371
           YA+Q G  + IA  +  +A+  G+ A    ++E     +     P LVV+ S+TG GDPP
Sbjct: 35  YATQQGQAKAIAEEMCEQAVVHGFSADLHCISESDKYDLKTETAP-LVVVVSTTGTGDPP 93

Query: 372 ENATNFFVALRKKQDKPAPLAGVRYTLLGLCDSNYTRFMGAPRAIKSRLAELGAAEFYPC 551
           + A  F   ++ +       A +RY LLGL DS YT F    + I  RL ELGA  FY  
Sbjct: 94  DTARKFVKEIQNQTLPVDFFAHLRYGLLGLGDSEYTYFCNGGKIIDKRLQELGARHFYDT 153

Query: 552 AEADEVDGIESVVDRWTAGIWAAIAA--ATAAGQDAMAAVSIDAPSATAAVKPAAVKVGP 725
             AD+  G+E VV+ W AG+W A+     ++ GQ+ ++        A     PA+++   
Sbjct: 154 GHADDCVGLELVVEPWIAGLWPALRKHFRSSRGQEEIS-------GALPVASPASLRTDL 206

Query: 726 SESEI 740
            +SE+
Sbjct: 207 VKSEL 211



EST assemble image


clone accession position
1 HCL057g01_r AV642775 1 496
2 HCL056d01_r AV642703 302 767




Chlamydomonas reinhardtii
Kazusa DNA Research Institute