KCC002543A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002543A_C01 KCC002543A_c01
tcaacattacaaTTCCTGCGCAAGCAATAAGACCAGCCCTCGACCACTGACCGCAATTCT
TCCGAGCGTGTTTGCCGTTTGCTAAAAGTATGCATTTTTGCGTTTAAAGTAACGATACAC
GATGAGGAAAGGCTGATACAATAGTGCACAGGCTCTACGAGCGCCTGGTTGCGGTTTAAG
CACTGGGCAGGCGCCCCGCCTGCCCACAAATCGGCGAGGTAGCTCGGCAAGATGTCGAAA
CCAATATTGGCTCGGTACGTGCCGCAGCTGCCGGATGGCTGGGTCAAGTGCCCACGCTTA
GGGGATCCGCGCTTCTTTGAGGGCCTCAACATTATCCCCTGCAAAGTCCCGCTGGGGCGG
CACTTCGACCAGCAGACTGGCGCCAGCGGGAGGTGGACGCTCGCAGACGCCATCCGGCAG
TTCCGGGGCTACGGCATGGAGGTGGCGACGGTGATCGACCTGACCAAGAGCCGCAACTAC
TACCACATTGGCAAGGAGATGGACGAGCTGGCTGGAATGCACCTGCCCACTGACATCAAC
TACGTAAAGATCGAGTGCCGCGGGCGCGGCGAGTCGCCCCGGCCGGCGGAGGTGAACGAG
GCGGTGTGGCACATCTTCATCCACTCGGTGACGCCGGAGCTGCAGAACAAGTACATCCTG
CTGCATTGCACACACGGCTTCAACCGCACGGGCTTTGTGATTGTGTCGGCTCTGATGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002543A_C01 KCC002543A_c01
         (718 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_198173.1| mRNA capping enzyme - like [Arabidopsis thalian...    95  1e-18
gb|AAN17417.1| mRNA capping enzyme - like protein [Arabidopsis t...    94  3e-18
ref|NP_187522.2| mRNA capping enzyme, RNA guanylyltransferase -r...    90  4e-17
gb|AAD56326.1|AC009326_13 putative mRNA capping enzyme, RNA guan...    90  4e-17
ref|NP_195749.1| mRNA capping enzyme - like protein [Arabidopsis...    85  1e-15

>ref|NP_198173.1| mRNA capping enzyme - like [Arabidopsis thaliana]
           gi|5732432|gb|AAD49100.1|AF177535_4 contains similarity
           to Pfam family PF01331 - mRNA capping enzyme;
           score=24.3, E=1.3e-11, E=1 [Arabidopsis thaliana]
          Length = 625

 Score = 94.7 bits (234), Expect = 1e-18
 Identities = 60/154 (38%), Positives = 77/154 (49%), Gaps = 4/154 (2%)
 Frame = +1

Query: 268 LPDGWVKCPRLGDPRFFEGLNIIPCKVPLGRHFDQQTGASGRWTLADAIRQFRGYGMEVA 447
           +P GW+ CPR G      GL IIP KVPL   ++    +  R+        F+ +  ++ 
Sbjct: 48  IPQGWLDCPRFGQ---HIGL-IIPSKVPLSESYNDCVPSGKRYN-------FKQWLTKIG 96

Query: 448 TVIDLTKSRNYYHIGKEMDELAGMHLPTDINYVKIECRGRGESPRPAEVNEAVWHIFIHS 627
            VIDLT +  YYH   E+ +         I YVKI C GR   P    VN      F+H 
Sbjct: 97  LVIDLTNTTRYYHPNTELRQ-------NRIEYVKIRCSGRDSVPDNVSVNT-----FVHE 144

Query: 628 VTP----ELQNKYILLHCTHGFNRTGFVIVSALM 717
           VT      L  KY+L+HCTHG NRTGF+IV  LM
Sbjct: 145 VTQFENHNLSEKYLLVHCTHGHNRTGFMIVHYLM 178

>gb|AAN17417.1| mRNA capping enzyme - like protein [Arabidopsis thaliana]
           gi|24899669|gb|AAN65049.1| mRNA capping enzyme - like
           protein [Arabidopsis thaliana]
          Length = 657

 Score = 93.6 bits (231), Expect = 3e-18
 Identities = 57/152 (37%), Positives = 76/152 (49%), Gaps = 1/152 (0%)
 Frame = +1

Query: 265 QLPDGWVKCPRLGDPRFFEGLNIIPCKVPLGRHFDQQTGASGRWTLADAIRQFRGYGMEV 444
           +LP GW+ CP  G     E   IIP KVPL   +++      R++    +R  R  G ++
Sbjct: 69  KLPQGWLDCPGFG----LEIGCIIPSKVPLSESYNEHVPPGKRYSFKQVVRNQRINGRKL 124

Query: 445 ATVIDLTKSRNYYHIGKEMDELAGMHLPTD-INYVKIECRGRGESPRPAEVNEAVWHIFI 621
             VIDLT +  YY           + L  D I +VKI CRGR   P    VN  V  +  
Sbjct: 125 GLVIDLTNTTRYYPT---------LDLKKDGIKHVKIACRGRDAVPDNVSVNTFVNEVLQ 175

Query: 622 HSVTPELQNKYILLHCTHGFNRTGFVIVSALM 717
             +  +   KY+L+HCTHG NRTGF+IV  LM
Sbjct: 176 FVLNQKHAKKYVLVHCTHGHNRTGFMIVHYLM 207

>ref|NP_187522.2| mRNA capping enzyme, RNA guanylyltransferase -related [Arabidopsis
           thaliana] gi|21928125|gb|AAM78090.1| AT3g09100/MZB10_13
           [Arabidopsis thaliana]
          Length = 471

 Score = 89.7 bits (221), Expect = 4e-17
 Identities = 53/151 (35%), Positives = 73/151 (48%)
 Frame = +1

Query: 265 QLPDGWVKCPRLGDPRFFEGLNIIPCKVPLGRHFDQQTGASGRWTLADAIRQFRGYGMEV 444
           ++P GW+ CP  G+   F    ++P KVPL   ++       R++    I   R  G ++
Sbjct: 82  KIPQGWLDCPPSGNEIGF----LVPSKVPLNESYNNHVPPGSRYSFKQVIHNQRIAGRKL 137

Query: 445 ATVIDLTKSRNYYHIGKEMDELAGMHLPTDINYVKIECRGRGESPRPAEVNEAVWHIFIH 624
             VIDLT +  YY       E         I +VKI C+GR   P    VN  V  +   
Sbjct: 138 GLVIDLTNTTRYYSTTDLKKE--------GIKHVKIACKGRDAVPDNVSVNAFVNEVNQF 189

Query: 625 SVTPELQNKYILLHCTHGFNRTGFVIVSALM 717
            +  +   KYIL+HCTHG NRTGF+IV  LM
Sbjct: 190 VLNLKHSKKYILVHCTHGHNRTGFMIVHYLM 220

>gb|AAD56326.1|AC009326_13 putative mRNA capping enzyme, RNA guanylyltransferase [Arabidopsis
           thaliana]
          Length = 653

 Score = 89.7 bits (221), Expect = 4e-17
 Identities = 53/151 (35%), Positives = 73/151 (48%)
 Frame = +1

Query: 265 QLPDGWVKCPRLGDPRFFEGLNIIPCKVPLGRHFDQQTGASGRWTLADAIRQFRGYGMEV 444
           ++P GW+ CP  G+   F    ++P KVPL   ++       R++    I   R  G ++
Sbjct: 82  KIPQGWLDCPPSGNEIGF----LVPSKVPLNESYNNHVPPGSRYSFKQVIHNQRIAGRKL 137

Query: 445 ATVIDLTKSRNYYHIGKEMDELAGMHLPTDINYVKIECRGRGESPRPAEVNEAVWHIFIH 624
             VIDLT +  YY       E         I +VKI C+GR   P    VN  V  +   
Sbjct: 138 GLVIDLTNTTRYYSTTDLKKE--------GIKHVKIACKGRDAVPDNVSVNAFVNEVNQF 189

Query: 625 SVTPELQNKYILLHCTHGFNRTGFVIVSALM 717
            +  +   KYIL+HCTHG NRTGF+IV  LM
Sbjct: 190 VLNLKHSKKYILVHCTHGHNRTGFMIVHYLM 220

>ref|NP_195749.1| mRNA capping enzyme - like protein [Arabidopsis thaliana]
           gi|11358515|pir||T45969 mRNA capping enzyme-like protein
           - Arabidopsis thaliana gi|6759452|emb|CAB69857.1| mRNA
           capping enzyme-like protein [Arabidopsis thaliana]
          Length = 607

 Score = 85.1 bits (209), Expect = 1e-15
 Identities = 56/152 (36%), Positives = 76/152 (49%), Gaps = 1/152 (0%)
 Frame = +1

Query: 265 QLPDGWVKCPRLGDPRFFEGLNIIPCKVPLGRHFDQQTGASGRWTLADAIRQFRGYGMEV 444
           +LP GW+ CP  G     E   IIP KVPL   +++      R++     +Q  G  +++
Sbjct: 69  KLPQGWLDCPGFG----LEIGCIIPSKVPLSESYNEHVPPGKRYSF----KQVMGL-LQL 119

Query: 445 ATVIDLTKSRNYYHIGKEMDELAGMHLPTD-INYVKIECRGRGESPRPAEVNEAVWHIFI 621
             VIDLT +  YY           + L  D I +VKI CRGR   P    VN  V  +  
Sbjct: 120 GLVIDLTNTTRYYPT---------LDLKKDGIKHVKIACRGRDAVPDNVSVNTFVNEVLQ 170

Query: 622 HSVTPELQNKYILLHCTHGFNRTGFVIVSALM 717
             +  +   KY+L+HCTHG NRTGF+IV  LM
Sbjct: 171 FVLNQKHAKKYVLVHCTHGHNRTGFMIVHYLM 202



EST assemble image


clone accession position
1 HCL055e01_r AV642655 1 431
2 MXL012c12_r BP093707 13 297
3 LCL086e05_r AV630933 192 718




Chlamydomonas reinhardtii
Kazusa DNA Research Institute