Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002539A_C01 KCC002539A_c01
(459 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_659832.1| unknown [Rhizobium etli] gi|21467182|gb|AAM5484... 34 0.89
ref|NP_006330.1| high-mobility group 20B; Sox-like transcription... 33 2.0
ref|NP_742363.1| alginate regulatory protein AlgP [Pseudomonas p... 32 2.6
ref|NP_758232.1| conserved hypothetical protein [Mycoplasma pene... 32 2.6
ref|XP_169395.3| similar to Iroquois-class homeodomain protein I... 32 3.4
>ref|NP_659832.1| unknown [Rhizobium etli] gi|21467182|gb|AAM54845.1| unknown
[Rhizobium etli]
Length = 170
Score = 33.9 bits (76), Expect = 0.89
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Frame = +3
Query: 36 QAQRAKATRNSPVPRRERARLRGAAAGRRNLFATWTLTRSCD---TPSALRLSFEPWPAA 206
+A R + R SP P G+AAG + W + D +P +L P P+
Sbjct: 4 RASRPQYRRCSPPP--------GSAAGSTSCAMPWPMLERADAEFSPPSL-----PRPSL 50
Query: 207 LGSSRQNKLAWATE---SGSKWLASAQAWSSTARFCSTTSKTNHSECWTSWRALSSRRSI 377
R+ L+ AT SG ++ +S W++ ++ CS T H W L S I
Sbjct: 51 RTRRRRQALSGATSPTRSGQRYRSSPVLWTAPSKTCSPTCPKQH------WAKLHSTNPI 104
>ref|NP_006330.1| high-mobility group 20B; Sox-like transcriptional factor;
SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily E, member 1-related
[Homo sapiens] gi|3329482|gb|AAC26860.1| Sox-like
transcriptional factor [Homo sapiens]
Length = 341
Score = 32.7 bits (73), Expect = 2.0
Identities = 36/112 (32%), Positives = 46/112 (40%), Gaps = 6/112 (5%)
Frame = +1
Query: 46 VQRPHAIHPSHEENARASEAQL------PAGATCSQPGRLRAPVTHQAL*GSPLNPGLLR 207
+QR +A HE+ ARAS A AGA + PGR AP H+ L L G
Sbjct: 118 LQRQNA---EHEQRARASGAGAGAGGAEDAGAAAAAPGR--APGAHRQL---RLTAGA-G 168
Query: 208 SGPRARTNLRGQLRAAQNG*HLLKPGLRLRGSARQRAKPITANAGPAGERCP 363
G A G L + H +P AR+ +P N GP +R P
Sbjct: 169 HGRNAHAGHSGLLHGPASRSHRARPR-----PAREAHRPHQGNPGPGRQRAP 215
>ref|NP_742363.1| alginate regulatory protein AlgP [Pseudomonas putida KT2440]
gi|24981549|gb|AAN65827.1|AE016211_5 alginate regulatory
protein AlgP [Pseudomonas putida KT2440]
Length = 329
Score = 32.3 bits (72), Expect = 2.6
Identities = 27/128 (21%), Positives = 44/128 (34%)
Frame = +1
Query: 25 QTLDRPSVQRPHAIHPSHEENARASEAQLPAGATCSQPGRLRAPVTHQAL*GSPLNPGLL 204
Q +P+ + A P+ + ARA+ A PA ++ P A +
Sbjct: 132 QRAAKPAAKATAAAKPAAKPAARATAAAKPAAKPAAKTTTAAKPAAKPAAKATAAAKPAA 191
Query: 205 RSGPRARTNLRGQLRAAQNG*HLLKPGLRLRGSARQRAKPITANAGPAGERCPPGAR*VL 384
+ +A + + A KP + A AKP A A P A+
Sbjct: 192 KPAAKATAAAKPAAKPAAKATAAAKPAAKPAAKATAAAKPAAKPAAKATAAAKPAAKPAA 251
Query: 385 SACFSARP 408
A +A+P
Sbjct: 252 KAAAAAKP 259
>ref|NP_758232.1| conserved hypothetical protein [Mycoplasma penetrans]
gi|26454307|dbj|BAC44636.1| conserved hypothetical
protein [Mycoplasma penetrans]
Length = 1085
Score = 32.3 bits (72), Expect = 2.6
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 183 SFEPWPAALGSSRQNKLAWATESGSKWLASAQAWSSTARFCSTTSKTNHSECWTSWRA 356
+F+ P A+ + N L T +G K ++S W+ST F S SE W ++A
Sbjct: 748 NFDNLPDAVKTKITNILTGITYTGFKSISSNSGWTSTPSFTDFDSSYLPSEIWGQYKA 805
>ref|XP_169395.3| similar to Iroquois-class homeodomain protein IRX-1 (Iroquois
homeobox protein 1) [Homo sapiens]
Length = 545
Score = 32.0 bits (71), Expect = 3.4
Identities = 25/63 (39%), Positives = 31/63 (48%), Gaps = 5/63 (7%)
Frame = +1
Query: 280 PGLRLRGSARQRAKPITANAGPAGERCPPGAR*VLSACF---SARPRHSGSSQ--WLSGW 444
PG R G RQRA+P + G A E PG R L+ + R H+G S+ WL
Sbjct: 329 PGTRAPGWQRQRAQPQGSLLGLAKEVPEPGCRRRLAPALQRAACRVSHAGKSKIWWLPRA 388
Query: 445 ASR 453
ASR
Sbjct: 389 ASR 391
