Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002526A_C01 KCC002526A_c01
(399 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA56558.1| pprB [Pseudomonas putida] 49 2e-05
dbj|BAC58076.2| large tegument protein [Cercopithecine herpesvir... 49 2e-05
ref|XP_346988.1| protein tyrosine phosphatase, receptor type, F ... 48 3e-05
ref|NP_035682.1| treacle [Mus musculus] gi|7513847|pir||JC5630 T... 47 5e-05
gb|AAH52669.1| Tcof1 protein [Mus musculus] 47 5e-05
>emb|CAA56558.1| pprB [Pseudomonas putida]
Length = 298
Score = 48.5 bits (114), Expect = 2e-05
Identities = 36/105 (34%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Frame = -3
Query: 325 AAAARAALPAAAAAAAAAAAGEGGA-PATGPGAVRR-TMALAAEPAPTPLLGLSPLGARS 152
A A AA PAAA A A AA + A PA P A + A AA+PA P +P A +
Sbjct: 173 APAKAAAKPAAAKAPAKTAAAKPAAKPAAKPAAGKAPAKAAAAKPAAKPAAAKAPAKAAA 232
Query: 151 AIPACAASQMVPEYDPVTLAAVTRSLPLSPVSISTSAPSCAAQSS 17
A PA + P A + P + +TS P+ A S+
Sbjct: 233 AKPAAKPAAAKAPAKPAAKPAAAKPAETKPATAATSTPAAATNSA 277
Score = 42.7 bits (99), Expect = 0.001
Identities = 36/100 (36%), Positives = 45/100 (45%)
Frame = -3
Query: 325 AAAARAALPAAAAAAAAAAAGEGGAPATGPGAVRRTMALAAEPAPTPLLGLSPLGARSAI 146
AAA AA PAAA A A AAA + PA P A + AA+PA P A ++
Sbjct: 213 AAAKPAAKPAAAKAPAKAAAAK---PAAKPAAAKAPAKPAAKPAAAKPAETKPATAATST 269
Query: 145 PACAASQMVPEYDPVTLAAVTRSLPLSPVSISTSAPSCAA 26
PA A + P T A+ +P S APS A+
Sbjct: 270 PAAATNSAA----PATAAS-------APASTPAQAPSSAS 298
Score = 37.7 bits (86), Expect = 0.039
Identities = 34/105 (32%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Frame = -3
Query: 322 AAARAALPAAAAAAAAAAAGEGGAPATGPGAVRR-TMALAAEPAPTPLLGLSPL--GARS 152
AA AA PAA A A AAA + PA P A + A AA+PA P +P A+
Sbjct: 196 AAKPAAKPAAGKAPAKAAAAK---PAAKPAAAKAPAKAAAAKPAAKPAAAKAPAKPAAKP 252
Query: 151 AIPACAASQMVPEYDPVTLAAVTRSLPLSPVSISTSAPSCAAQSS 17
A A ++ AA + P + S S P+ A S+
Sbjct: 253 AAAKPAETKPATAATSTPAAATNSAAPATAASAPASTPAQAPSSA 297
Score = 33.9 bits (76), Expect = 0.56
Identities = 26/83 (31%), Positives = 35/83 (41%)
Frame = +3
Query: 150 ALRAPSGDSPSSGVGAGSAASAIVLRTAPGPVAGAPPSPAAAAAAAAAAAGSAARAAAAQ 329
A + +G +P+ A AA A P A PAA AAA A A AA+ AAA+
Sbjct: 200 AAKPAAGKAPAKAAAAKPAAKPAA---AKAPAKAAAAKPAAKPAAAKAPAKPAAKPAAAK 256
Query: 330 HMERLSAWKDSLVERLGRSSSQP 398
E A + +S+ P
Sbjct: 257 PAETKPATAATSTPAAATNSAAP 279
Score = 33.5 bits (75), Expect = 0.73
Identities = 32/88 (36%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = -3
Query: 382 RPSRSTSESFQALSRSICWAAAARAALPAAAA--AAAAAAAGEGGAPATGPGAVRRTMAL 209
+P+ + + A ++ AAA+A AAAA AA AAA PA P A A
Sbjct: 202 KPAAGKAPAKAAAAKPAAKPAAAKAPAKAAAAKPAAKPAAAKAPAKPAAKPAA-----AK 256
Query: 208 AAEPAPTPLLGLSPLGA-RSAIPACAAS 128
AE P +P A SA PA AAS
Sbjct: 257 PAETKPATAATSTPAAATNSAAPATAAS 284
Score = 32.0 bits (71), Expect = 2.1
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +3
Query: 201 SAASAIVLRTAPGPVAGAPPSPAAAAAAAAAAAGSAARAAAAQHMERLSAWK 356
+AA A A P A PAA AA A A A +AA+ AAA+ + +A K
Sbjct: 143 AAAKAPAKAAATKPAARTAAKPAAKAATAKAPAKAAAKPAAAKAPAKTAAAK 194
Score = 30.8 bits (68), Expect = 4.7
Identities = 24/89 (26%), Positives = 37/89 (40%)
Frame = +3
Query: 132 AAHAGMALRAPSGDSPSSGVGAGSAASAIVLRTAPGPVAGAPPSPAAAAAAAAAAAGSAA 311
AA A R + + + A +A A P A PAA AA AA + A
Sbjct: 151 AAATKPAARTAAKPAAKAATAKAPAKAAAKPAAAKAPAKTAAAKPAAKPAAKPAAGKAPA 210
Query: 312 RAAAAQHMERLSAWKDSLVERLGRSSSQP 398
+AAAA+ + +A K + +++P
Sbjct: 211 KAAAAKPAAKPAAAKAPAKAAAAKPAAKP 239
Score = 30.4 bits (67), Expect = 6.2
Identities = 26/75 (34%), Positives = 37/75 (48%), Gaps = 4/75 (5%)
Frame = +3
Query: 117 GTICDAAHAGMALRA---PSGDSPSSGVGAGSAASAIVLRTAPGPVAGAPPSPAAAAAAA 287
G + +AA + RA + ++ A +AA+ RTA P A A + A A AAA
Sbjct: 120 GKVREAASKALVQRAVAVKAAKPAAAKAPAKAAATKPAARTAAKPAAKAATAKAPAKAAA 179
Query: 288 AAAAGSA-ARAAAAQ 329
AA A A+ AAA+
Sbjct: 180 KPAAAKAPAKTAAAK 194
>dbj|BAC58076.2| large tegument protein [Cercopithecine herpesvirus 1]
Length = 3326
Score = 48.5 bits (114), Expect = 2e-05
Identities = 39/96 (40%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Frame = -3
Query: 325 AAAARAALPAAAAAAAAAAAGEGGAPATGPGAVRRTMALAAEPAP-TPLLGLSPLGARSA 149
AA A A PAA AA AA AA APA P A A AA AP P +P A A
Sbjct: 2908 AAPAAPAAPAAPAAPAAPAAPAAPAPAAVPAAPAAPAAPAAPAAPAAPAAPAAP--AAPA 2965
Query: 148 IPACAASQMVPEYDPVTLAAVTRSLPLSPVSISTSA 41
PA A VP P A +T + SP +T A
Sbjct: 2966 APAAPAPAAVPVVVPAPTATLTATTTTSPAPAATPA 3001
Score = 36.2 bits (82), Expect = 0.11
Identities = 30/99 (30%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Frame = -3
Query: 325 AAAARAALPAAAAAAA--AAAAGEGGAPATGPGAVRRTMALAAEPAPTPLLGLSPLGARS 152
AA A A PAA AA A AA A A A A A PA A +
Sbjct: 2875 AAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAPA 2934
Query: 151 AIPACAASQMVPEYDPVTLAAVTRSLPLSPVSISTSAPS 35
A+PA A+ P A + P +P + + AP+
Sbjct: 2935 AVPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAPA 2973
Score = 32.7 bits (73), Expect = 1.2
Identities = 36/111 (32%), Positives = 39/111 (34%), Gaps = 7/111 (6%)
Frame = -3
Query: 325 AAAARAALPAAAAA-------AAAAAAGEGGAPATGPGAVRRTMALAAEPAPTPLLGLSP 167
AA A AA+PAA AA AA AA APA A P P L+
Sbjct: 2929 AAPAPAAVPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAPAAVPVVVPAPTATLTA 2988
Query: 166 LGARSAIPACAASQMVPEYDPVTLAAVTRSLPLSPVSISTSAPSCAAQSSL 14
S PA + VP T SLP P S P Q SL
Sbjct: 2989 TTTTSPAPAATPASPVP--------TPTSSLPTPP-----SKPPAFFQPSL 3026
Score = 32.0 bits (71), Expect = 2.1
Identities = 17/27 (62%), Positives = 19/27 (69%)
Frame = +3
Query: 246 AGAPPSPAAAAAAAAAAAGSAARAAAA 326
A APP+PAA AA AA AA +A A AA
Sbjct: 2850 ASAPPAPAAPAAPAAPAAPAAPAAPAA 2876
Score = 30.4 bits (67), Expect = 6.2
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 234 PGPVAGAPPSPAAAAAAAAAAAGSAARAAA 323
P P G PPSPAA A AAA+G + A
Sbjct: 3108 PEPPQGRPPSPAAPDAGPAAASGPSGGVPA 3137
Score = 30.4 bits (67), Expect = 6.2
Identities = 25/65 (38%), Positives = 32/65 (48%), Gaps = 1/65 (1%)
Frame = +3
Query: 132 AAHAGMALRAPSGDSPSSGVGAGSAASAIVLRTAPGPVAGAPPSPAAAAA-AAAAAAGSA 308
A A A AP+ + + A +A +A AP P A P +PAA AA AA AA +
Sbjct: 2897 APAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAPAA-VPAAPAAPAAPAAPAAPAAP 2955
Query: 309 ARAAA 323
A AA
Sbjct: 2956 AAPAA 2960
>ref|XP_346988.1| protein tyrosine phosphatase, receptor type, F [Rattus norvegicus]
Length = 197
Score = 48.1 bits (113), Expect = 3e-05
Identities = 39/96 (40%), Positives = 48/96 (49%), Gaps = 16/96 (16%)
Frame = +3
Query: 87 TAANVTGSYSGTICDAAHAGMALRAPSGDSPSSGVGAGSAASAIVLRTAPGPVA------ 248
TAA G+ + T AA A A A +G + +S AG+AA+A A G A
Sbjct: 88 TAAAAAGA-AATAEAAAGAAAAAAAAAGAAEASEAAAGAAAAAAAAAAAAGATATAAAAA 146
Query: 249 ----------GAPPSPAAAAAAAAAAAGSAARAAAA 326
GA +PAAAA AAAAAA +AA AAAA
Sbjct: 147 GAASAAAAAAGAAEAPAAAAGAAAAAAAAAAAAAAA 182
Score = 46.6 bits (109), Expect = 8e-05
Identities = 37/101 (36%), Positives = 46/101 (44%), Gaps = 1/101 (0%)
Frame = +3
Query: 27 AAQEGAEVDMLTGLKGKLLVTAANVTGSYSGTICDAAHAGMALRAPSGDSPSSGVGAGSA 206
AA A + G A S + AA A A A + + ++ GA SA
Sbjct: 92 AAGAAATAEAAAGAAAAAAAAAGAAEASEAAAGAAAAAAAAAAAAGATATAAAAAGAASA 151
Query: 207 ASAIV-LRTAPGPVAGAPPSPAAAAAAAAAAAGSAARAAAA 326
A+A AP AGA + AAAAAAAAAAA +AA A A
Sbjct: 152 AAAAAGAAEAPAAAAGAAAAAAAAAAAAAAAAATAAVPAGA 192
Score = 46.2 bits (108), Expect = 1e-04
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Frame = +3
Query: 75 KLLVTAANVTGSYSGTICDAAHAGMALRAPS-----GDSPSSGVGAGSAASAIVLRTAPG 239
+L V AA + +GT AA A A A + G + ++ AG+AA+A TA
Sbjct: 5 QLAVQAAAGAAAPAGTAAAAAAAAAAAAAAAAAAATGAAATTAAAAGAAAAAAAATTAAA 64
Query: 240 PVAGAPPSPAAAAAAAAAAAGSAARAAAA 326
A + A AAAAAAAA +A AAAA
Sbjct: 65 AAAAGAAATAGAAAAAAAAGAAATAAAAA 93
Score = 45.8 bits (107), Expect = 1e-04
Identities = 36/100 (36%), Positives = 45/100 (45%)
Frame = +3
Query: 27 AAQEGAEVDMLTGLKGKLLVTAANVTGSYSGTICDAAHAGMALRAPSGDSPSSGVGAGSA 206
AA G AA TG+ + T AA AG A A + + ++ AG+A
Sbjct: 15 AAPAGTAAAAAAAAAAAAAAAAAAATGAAATT---AAAAGAAAAAAAATTAAAAAAAGAA 71
Query: 207 ASAIVLRTAPGPVAGAPPSPAAAAAAAAAAAGSAARAAAA 326
A+A A A A + AA AAA A AA AA AAAA
Sbjct: 72 ATAGAAAAAAAAGAAATAAAAAGAAATAEAAAGAAAAAAA 111
Score = 45.1 bits (105), Expect = 2e-04
Identities = 36/103 (34%), Positives = 44/103 (41%)
Frame = -3
Query: 325 AAAARAALPAAAAAAAAAAAGEGGAPATGPGAVRRTMALAAEPAPTPLLGLSPLGARSAI 146
AA A AA AAAAAAAAA A E A G A A AA T + GA SA
Sbjct: 96 AATAEAAAGAAAAAAAAAGAAEASEAAAGAAAAAAAAAAAAGATAT---AAAAAGAASAA 152
Query: 145 PACAASQMVPEYDPVTLAAVTRSLPLSPVSISTSAPSCAAQSS 17
A A + P AA + + + +T+A A S+
Sbjct: 153 AAAAGAAEAPAAAAGAAAAAAAAAAAAAAAAATAAVPAGAASA 195
Score = 45.1 bits (105), Expect = 2e-04
Identities = 35/98 (35%), Positives = 44/98 (44%)
Frame = +3
Query: 27 AAQEGAEVDMLTGLKGKLLVTAANVTGSYSGTICDAAHAGMALRAPSGDSPSSGVGAGSA 206
AA GA AA S AA A A A +G + ++ AG+A
Sbjct: 90 AAAAGAAATAEAAAGAAAAAAAAAGAAEASEAAAGAAAAAAAAAAAAGATATAAAAAGAA 149
Query: 207 ASAIVLRTAPGPVAGAPPSPAAAAAAAAAAAGSAARAA 320
++A A A A + AAAAAAAAAAA +AA AA
Sbjct: 150 SAAAAAAGAAEAPAAAAGAAAAAAAAAAAAAAAAATAA 187
Score = 44.7 bits (104), Expect = 3e-04
Identities = 36/106 (33%), Positives = 45/106 (41%)
Frame = -3
Query: 322 AAARAALPAAAAAAAAAAAGEGGAPATGPGAVRRTMALAAEPAPTPLLGLSPLGARSAIP 143
AAA A AAAAAAAAAAA A ATG A A AA A + A +A
Sbjct: 14 AAAPAGTAAAAAAAAAAAAAAAAAAATGAAATTAAAAGAAAAAAAATTAAAAAAAGAAAT 73
Query: 142 ACAASQMVPEYDPVTLAAVTRSLPLSPVSISTSAPSCAAQSSLRNS 5
A AA+ T AA + + + +A + AA + S
Sbjct: 74 AGAAAAAAAAGAAATAAAAAGAAATAEAAAGAAAAAAAAAGAAEAS 119
Score = 43.1 bits (100), Expect = 0.001
Identities = 30/79 (37%), Positives = 38/79 (47%)
Frame = -3
Query: 364 SESFQALSRSICWAAAARAALPAAAAAAAAAAAGEGGAPATGPGAVRRTMALAAEPAPTP 185
+E+ +A + + AAAA AA A A AAAAA A A A G A AA A
Sbjct: 116 AEASEAAAGAAAAAAAAAAAAGATATAAAAAGAASAAAAAAGAAEAPAAAAGAAAAAAAA 175
Query: 184 LLGLSPLGARSAIPACAAS 128
+ A +A+PA AAS
Sbjct: 176 AAAAAAAAATAAVPAGAAS 194
Score = 43.1 bits (100), Expect = 0.001
Identities = 36/103 (34%), Positives = 47/103 (44%)
Frame = -3
Query: 325 AAAARAALPAAAAAAAAAAAGEGGAPATGPGAVRRTMALAAEPAPTPLLGLSPLGARSAI 146
AAAA AA AAAAAAA AAA G A A T A AA A T + GA +A
Sbjct: 53 AAAAAAATTAAAAAAAGAAATAGAAAAAAAAGAAATAAAAAGAAAT---AEAAAGAAAAA 109
Query: 145 PACAASQMVPEYDPVTLAAVTRSLPLSPVSISTSAPSCAAQSS 17
A A + E AA + + + + +A + AA ++
Sbjct: 110 AAAAGAAEASEAAAGAAAAAAAAAAAAGATATAAAAAGAASAA 152
Score = 42.4 bits (98), Expect = 0.002
Identities = 32/86 (37%), Positives = 43/86 (49%), Gaps = 1/86 (1%)
Frame = +3
Query: 72 GKLLVTAANVTGSYSGTICDAAHAGMALRAPS-GDSPSSGVGAGSAASAIVLRTAPGPVA 248
G AA T + + AA AG A A + G + ++ AG+AA+A A A
Sbjct: 51 GAAAAAAAATTAAAAAAAGAAATAGAAAAAAAAGAAATAAAAAGAAATAEAAAGAAAAAA 110
Query: 249 GAPPSPAAAAAAAAAAAGSAARAAAA 326
A + A+ AAA AAA +AA AAAA
Sbjct: 111 AAAGAAEASEAAAGAAAAAAAAAAAA 136
Score = 42.4 bits (98), Expect = 0.002
Identities = 34/81 (41%), Positives = 44/81 (53%), Gaps = 2/81 (2%)
Frame = +3
Query: 90 AANVTGSYSGTICDAAHAGMALRAPS--GDSPSSGVGAGSAASAIVLRTAPGPVAGAPPS 263
AA + +G AA AG A A + G + ++ AG+AA+A A + A
Sbjct: 66 AAAGAAATAGAAAAAAAAGAAATAAAAAGAAATAEAAAGAAAAAAAAAGA-AEASEAAAG 124
Query: 264 PAAAAAAAAAAAGSAARAAAA 326
AAAAAAAAAAAG+ A AAAA
Sbjct: 125 AAAAAAAAAAAAGATATAAAA 145
Score = 41.6 bits (96), Expect = 0.003
Identities = 33/103 (32%), Positives = 41/103 (39%)
Frame = -3
Query: 325 AAAARAALPAAAAAAAAAAAGEGGAPATGPGAVRRTMALAAEPAPTPLLGLSPLGARSAI 146
AAAA AA AAA AAA A GA A A A AA A T + A +A
Sbjct: 28 AAAAAAAAAAAATGAAATTAAAAGAAAAAAAATTAAAAAAAGAAATAGAAAAAAAAGAAA 87
Query: 145 PACAASQMVPEYDPVTLAAVTRSLPLSPVSISTSAPSCAAQSS 17
A AA+ + AA + S +A AA ++
Sbjct: 88 TAAAAAGAAATAEAAAGAAAAAAAAAGAAEASEAAAGAAAAAA 130
Score = 41.6 bits (96), Expect = 0.003
Identities = 34/104 (32%), Positives = 43/104 (40%), Gaps = 4/104 (3%)
Frame = +3
Query: 27 AAQEGAEVDMLTGLKGKLLVTAANVTGSYSGTICDAAHAGMALRAPSGDSPSSGVGAGSA 206
AA A TG A + + T AA A A + ++ GA +
Sbjct: 29 AAAAAAAAAAATGAAATTAAAAGAAAAAAAATTAAAAAAAGAAATAGAAAAAAAAGAAAT 88
Query: 207 ASAIVLRTAPGPVAGAPPSPAAAAAAAA----AAAGSAARAAAA 326
A+A A A + AAAAA AA AAAG+AA AAAA
Sbjct: 89 AAAAAGAAATAEAAAGAAAAAAAAAGAAEASEAAAGAAAAAAAA 132
Score = 41.2 bits (95), Expect = 0.004
Identities = 32/100 (32%), Positives = 40/100 (40%)
Frame = -3
Query: 325 AAAARAALPAAAAAAAAAAAGEGGAPATGPGAVRRTMALAAEPAPTPLLGLSPLGARSAI 146
AAAA AA AAAA AAAAA G A G A AA A + A A
Sbjct: 47 AAAAGAAAAAAAATTAAAAAAAGAAATAGAAAAAAAAGAAATAAAAAGAAATAEAAAGAA 106
Query: 145 PACAASQMVPEYDPVTLAAVTRSLPLSPVSISTSAPSCAA 26
A AA+ E A + + + +T+ + AA
Sbjct: 107 AAAAAAAGAAEASEAAAGAAAAAAAAAAAAGATATAAAAA 146
Score = 40.8 bits (94), Expect = 0.005
Identities = 29/80 (36%), Positives = 38/80 (47%)
Frame = +3
Query: 87 TAANVTGSYSGTICDAAHAGMALRAPSGDSPSSGVGAGSAASAIVLRTAPGPVAGAPPSP 266
TAA + + AA A A A + + ++G A + A+A A A S
Sbjct: 61 TAAAAAAAGAAATAGAAAAAAAAGAAATAAAAAGAAATAEAAAGAAAAAAAAAGAAEASE 120
Query: 267 AAAAAAAAAAAGSAARAAAA 326
AAA AAAAAAA +AA A A
Sbjct: 121 AAAGAAAAAAAAAAAAGATA 140
Score = 40.4 bits (93), Expect = 0.006
Identities = 32/108 (29%), Positives = 44/108 (40%)
Frame = +3
Query: 27 AAQEGAEVDMLTGLKGKLLVTAANVTGSYSGTICDAAHAGMALRAPSGDSPSSGVGAGSA 206
AA A G AA + T AA A A +G + ++ AG+A
Sbjct: 57 AAATTAAAAAAAGAAATAGAAAAAAAAGAAATAAAAAGAAATAEAAAGAAAAAAAAAGAA 116
Query: 207 ASAIVLRTAPGPVAGAPPSPAAAAAAAAAAAGSAARAAAAQHMERLSA 350
++ A A A + A A AAAAA ++A AAAA E +A
Sbjct: 117 EASEAAAGAAAAAAAAAAAAGATATAAAAAGAASAAAAAAGAAEAPAA 164
Score = 40.4 bits (93), Expect = 0.006
Identities = 34/119 (28%), Positives = 50/119 (41%), Gaps = 1/119 (0%)
Frame = -3
Query: 370 STSESFQALSRSICWAAAARAALPAAAAAAAAAAAGEGGAPATGPGAVRRTMALA-AEPA 194
+T+ + A + + A AA AA A AAA AAAAAG GA A A A A
Sbjct: 59 ATTAAAAAAAGAAATAGAAAAAAAAGAAATAAAAAGAAATAEAAAGAAAAAAAAAGAAEA 118
Query: 193 PTPLLGLSPLGARSAIPACAASQMVPEYDPVTLAAVTRSLPLSPVSISTSAPSCAAQSS 17
G + A +A A A + + AA +P + + +A + AA ++
Sbjct: 119 SEAAAGAAAAAAAAAAAAGATATAAAAAGAASAAAAAAGAAEAPAAAAGAAAAAAAAAA 177
Score = 40.4 bits (93), Expect = 0.006
Identities = 30/81 (37%), Positives = 34/81 (41%)
Frame = -3
Query: 325 AAAARAALPAAAAAAAAAAAGEGGAPATGPGAVRRTMALAAEPAPTPLLGLSPLGARSAI 146
A A+ AA AAAAAAAAAAA A A A AA A P A +A
Sbjct: 116 AEASEAAAGAAAAAAAAAAAAGATATAAAAAGAASAAAAAAGAAEAPAAAAGAAAAAAAA 175
Query: 145 PACAASQMVPEYDPVTLAAVT 83
A AA+ P A+ T
Sbjct: 176 AAAAAAAAATAAVPAGAASAT 196
Score = 39.7 bits (91), Expect = 0.010
Identities = 32/103 (31%), Positives = 41/103 (39%)
Frame = -3
Query: 325 AAAARAALPAAAAAAAAAAAGEGGAPATGPGAVRRTMALAAEPAPTPLLGLSPLGARSAI 146
AAAA A AAAAAA AAA A A GA A A A + A +A
Sbjct: 54 AAAAAATTAAAAAAAGAAATAGAAAAAAAAGAAATAAAAAGAAATAEAAAGAAAAAAAAA 113
Query: 145 PACAASQMVPEYDPVTLAAVTRSLPLSPVSISTSAPSCAAQSS 17
A AS+ AA + + + + A S AA ++
Sbjct: 114 GAAEASEAAAGAAAAAAAAAAAAGATATAAAAAGAASAAAAAA 156
Score = 37.7 bits (86), Expect = 0.039
Identities = 27/84 (32%), Positives = 36/84 (42%)
Frame = +3
Query: 75 KLLVTAANVTGSYSGTICDAAHAGMALRAPSGDSPSSGVGAGSAASAIVLRTAPGPVAGA 254
KLL A + AA A A A + + ++ GA + +A A A
Sbjct: 2 KLLQLAVQAAAGAAAPAGTAAAAAAAAAAAAAAAAAAATGAAATTAAAAGAAAAAAAATT 61
Query: 255 PPSPAAAAAAAAAAAGSAARAAAA 326
+ AAA AAA A A +AA AA A
Sbjct: 62 AAAAAAAGAAATAGAAAAAAAAGA 85
Score = 37.0 bits (84), Expect = 0.066
Identities = 33/87 (37%), Positives = 38/87 (42%), Gaps = 13/87 (14%)
Frame = -3
Query: 349 ALSRSICWAAAARAA---------LPAAAAAAAAAAAGEGGAPATGPGAVRRTMALA--- 206
A + + AAAA AA A AAAAAAAAA GA AT A A A
Sbjct: 97 ATAEAAAGAAAAAAAAAGAAEASEAAAGAAAAAAAAAAAAGATATAAAAAGAASAAAAAA 156
Query: 205 -AEPAPTPLLGLSPLGARSAIPACAAS 128
A AP G + A +A A AA+
Sbjct: 157 GAAEAPAAAAGAAAAAAAAAAAAAAAA 183
Score = 35.8 bits (81), Expect = 0.15
Identities = 32/110 (29%), Positives = 44/110 (39%)
Frame = -3
Query: 349 ALSRSICWAAAARAALPAAAAAAAAAAAGEGGAPATGPGAVRRTMALAAEPAPTPLLGLS 170
A + + AAA AA AAA A AAAAA GA AT A A A A +
Sbjct: 53 AAAAAAATTAAAAAAAGAAATAGAAAAAAAAGAAATA-AAAAGAAATAEAAAGAAAAAAA 111
Query: 169 PLGARSAIPACAASQMVPEYDPVTLAAVTRSLPLSPVSISTSAPSCAAQS 20
GA A A A + A + + + + +A + AA++
Sbjct: 112 AAGAAEASEAAAGAAAAAAAAAAAAGATATAAAAAGAASAAAAAAGAAEA 161
Score = 35.8 bits (81), Expect = 0.15
Identities = 33/100 (33%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Frame = -3
Query: 352 QALSRSICWAAAARAALPAAAAAAAAAAAGEGGAPATGPGAVRRTMALAAEPAPTPL-LG 176
+A + + AAAA A A+ AAA AAAA A A G A A AA A
Sbjct: 100 EAAAGAAAAAAAAAGAAEASEAAAGAAAAAAAAAAAAGATATAAAAAGAASAAAAAAGAA 159
Query: 175 LSPLGARSAIPACAASQMVPEYDPVTLAAVTRSLPLSPVS 56
+P A A A AA+ AA T ++P S
Sbjct: 160 EAPAAAAGAAAAAAAAAAA-----AAAAAATAAVPAGAAS 194
Score = 32.7 bits (73), Expect = 1.2
Identities = 20/37 (54%), Positives = 20/37 (54%)
Frame = -3
Query: 325 AAAARAALPAAAAAAAAAAAGEGGAPATGPGAVRRTM 215
A AA A AAAAAAAAAAA A GA TM
Sbjct: 161 APAAAAGAAAAAAAAAAAAAAAAATAAVPAGAASATM 197
Score = 32.7 bits (73), Expect = 1.2
Identities = 30/121 (24%), Positives = 45/121 (36%)
Frame = -3
Query: 379 PSRSTSESFQALSRSICWAAAARAALPAAAAAAAAAAAGEGGAPATGPGAVRRTMALAAE 200
P+ + + + A + + AAAA A AAAA AAA A A A A
Sbjct: 17 PAGTAAAAAAAAAAAAAAAAAAATGAAATTAAAAGAAAAAAAATTAAAAAAAGAAATAGA 76
Query: 199 PAPTPLLGLSPLGARSAIPACAASQMVPEYDPVTLAAVTRSLPLSPVSISTSAPSCAAQS 20
A G + A +A AA+ AA + S + +A + AA +
Sbjct: 77 AAAAAAAGAAATAAAAA--GAAATAEAAAGAAAAAAAAAGAAEASEAAAGAAAAAAAAAA 134
Query: 19 S 17
+
Sbjct: 135 A 135
Score = 30.8 bits (68), Expect = 4.7
Identities = 23/56 (41%), Positives = 27/56 (48%)
Frame = -3
Query: 370 STSESFQALSRSICWAAAARAALPAAAAAAAAAAAGEGGAPATGPGAVRRTMALAA 203
+T+ + A + AAAA AA AAAA AAAAA A A A A AA
Sbjct: 138 ATATAAAAAGAASAAAAAAGAAEAPAAAAGAAAAAAAAAAAAAAAAATAAVPAGAA 193
>ref|NP_035682.1| treacle [Mus musculus] gi|7513847|pir||JC5630 TCOF1 protein - mouse
gi|2109459|gb|AAB71347.1| Treacher Collins Syndrome
protein [Mus musculus]
Length = 1320
Score = 47.4 bits (111), Expect = 5e-05
Identities = 35/98 (35%), Positives = 49/98 (49%), Gaps = 5/98 (5%)
Frame = +3
Query: 84 VTAANVTGSYSGTICDAAHAGMALRAPSGDSPSSGVGAGSAASAIVLRTAPGP-----VA 248
V+A + S + + + +++P+ P+ + + A RTAPGP VA
Sbjct: 189 VSAGQGSSSSEDSSISSDETDVEVKSPA--KPAQAKASAAPAKDPPARTAPGPTKLGNVA 246
Query: 249 GAPPSPAAAAAAAAAAAGSAARAAAAQHMERLSAWKDS 362
P PA AAAAAAAAA +AA AAAA+ E DS
Sbjct: 247 PTPAKPARAAAAAAAAAVAAAAAAAAEESESSEEDSDS 284
>gb|AAH52669.1| Tcof1 protein [Mus musculus]
Length = 1320
Score = 47.4 bits (111), Expect = 5e-05
Identities = 35/98 (35%), Positives = 49/98 (49%), Gaps = 5/98 (5%)
Frame = +3
Query: 84 VTAANVTGSYSGTICDAAHAGMALRAPSGDSPSSGVGAGSAASAIVLRTAPGP-----VA 248
V+A + S + + + +++P+ P+ + + A RTAPGP VA
Sbjct: 189 VSAGQGSSSSEDSSISSDETDVEVKSPA--KPAQAKASAAPAKDPPARTAPGPTKLGNVA 246
Query: 249 GAPPSPAAAAAAAAAAAGSAARAAAAQHMERLSAWKDS 362
P PA AAAAAAAAA +AA AAAA+ E DS
Sbjct: 247 PTPAKPARAAAAAAAAAVAAAAAAAAEESESSEEDSDS 284
