KCC002521A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002521A_C01 KCC002521A_c01
gaccactatgcagcagcgtctccagggccgtaacgtggccgggcggagcgtcgctccctc
ggtccctgcccatcgctcctTCCACTCACACCGGGCTGCCACTCAAACCGCTACGATCAG
CGCTGCTGCTAGCTCAACCACCAAGCTGCCAGCTTCGCATCTGGAGAGCAGCAAGAAGGC
GCTGGATTCGCTGAAGCAGCAGGCCGTCAATCGCTACGCGGGTGACAAGAAGAGCTCCAT
TATTGCCATTGGTCTCACCATTCACAACGCACCCGTGGAGCTGCGCGAGAAGCTGGCTGT
GCCTGAGGCTGAATGGCCGCGTGCTATTGAGGAGCTCTGCCAGTTCCCGCACATCGAGGA
GGCCGCGGTGCTGTCGACGTGCAATCGCATGGAGCTCTACGTTGTCGGTCTGTCGTGGCA
CCGCGGCGTACGCGAGGTGGAGGAGTGGCTGTCTCGCACCAGCGGCGTGCCTCTGGATGA
GCTGCGCCCCTACCTGTTCCTGCTGCGCGACCGCGACGCCACGCACCACCTGATGCGCGT
GTCGGGTGGCCTTGACTCGCTGGTTATGGGCGAGGGCCAGATTCTCGCCCAAGTGCGCCA
GGTCTACAAGGTCGGCCAGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002521A_C01 KCC002521A_c01
         (620 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAG41962.1|AF305613_1 glutamyl-tRNA reductase precursor [Chla...   407  e-113
ref|NP_176125.1| glutamyl-tRNA reductase 1 (GluTR) (HEMA1) [Arab...   206  3e-52
gb|AAD16897.1| glutamyl-tRNA reductase precursor [Glycine max]        204  6e-52
gb|AAA19118.1| glutamyl-tRNA reductase                                204  8e-52
ref|NP_172465.1| glutamyl-tRNA reductase 2 (GluTR) (HEMA2) [Arab...   204  1e-51

>gb|AAG41962.1|AF305613_1 glutamyl-tRNA reductase precursor [Chlamydomonas reinhardtii]
          Length = 522

 Score =  407 bits (1046), Expect = e-113
 Identities = 206/206 (100%), Positives = 206/206 (100%)
 Frame = +2

Query: 2   TTMQQRLQGRNVAGRSVAPSVPAHRSFHSHRAATQTATISAAASSTTKLPASHLESSKKA 181
           TTMQQRLQGRNVAGRSVAPSVPAHRSFHSHRAATQTATISAAASSTTKLPASHLESSKKA
Sbjct: 3   TTMQQRLQGRNVAGRSVAPSVPAHRSFHSHRAATQTATISAAASSTTKLPASHLESSKKA 62

Query: 182 LDSLKQQAVNRYAGDKKSSIIAIGLTIHNAPVELREKLAVPEAEWPRAIEELCQFPHIEE 361
           LDSLKQQAVNRYAGDKKSSIIAIGLTIHNAPVELREKLAVPEAEWPRAIEELCQFPHIEE
Sbjct: 63  LDSLKQQAVNRYAGDKKSSIIAIGLTIHNAPVELREKLAVPEAEWPRAIEELCQFPHIEE 122

Query: 362 AAVLSTCNRMELYVVGLSWHRGVREVEEWLSRTSGVPLDELRPYLFLLRDRDATHHLMRV 541
           AAVLSTCNRMELYVVGLSWHRGVREVEEWLSRTSGVPLDELRPYLFLLRDRDATHHLMRV
Sbjct: 123 AAVLSTCNRMELYVVGLSWHRGVREVEEWLSRTSGVPLDELRPYLFLLRDRDATHHLMRV 182

Query: 542 SGGLDSLVMGEGQILAQVRQVYKVGQ 619
           SGGLDSLVMGEGQILAQVRQVYKVGQ
Sbjct: 183 SGGLDSLVMGEGQILAQVRQVYKVGQ 208

>ref|NP_176125.1| glutamyl-tRNA reductase 1 (GluTR) (HEMA1) [Arabidopsis thaliana]
           gi|20141560|sp|P42804|HMA1_ARATH Glutamyl-tRNA reductase
           1, chloroplast precursor (GluTR) gi|25286553|pir||E96616
           hypothetical protein F19C14.9 [imported] - Arabidopsis
           thaliana gi|8979944|gb|AAF82258.1|AC008051_9 Identical
           to glutamyl-tRNA reductase (hemA) from Arabidopsis
           thaliana gb|U03774 and contains a Glutaminyl-tRNA
           reductase PF|00745 domain.  ESTs gb|H37325, gb|R90339,
           gb|AI992625, gb|N96248, gb|U74113 come from this gene
           gi|18176439|gb|AAL60044.1| putative glutamyl-tRNA
           reductase [Arabidopsis thaliana]
           gi|20465535|gb|AAM20250.1| putative glutamyl-tRNA
           reductase [Arabidopsis thaliana]
          Length = 543

 Score =  206 bits (523), Expect = 3e-52
 Identities = 106/178 (59%), Positives = 133/178 (74%)
 Frame = +2

Query: 86  SHRAATQTATISAAASSTTKLPASHLESSKKALDSLKQQAVNRYAGDKKSSIIAIGLTIH 265
           + R   Q A    +ASS +   A+ +     AL+ LK  A +RY  ++ SSI+ IGL+IH
Sbjct: 51  TRRGLIQKARCELSASSDSASNAASIS----ALEQLKNSAADRYTKER-SSIVVIGLSIH 105

Query: 266 NAPVELREKLAVPEAEWPRAIEELCQFPHIEEAAVLSTCNRMELYVVGLSWHRGVREVEE 445
            APVE+REKLA+PEAEWPRAI ELC   HIEEAAVLSTCNRME+YV+ LS HRGV+EV E
Sbjct: 106 TAPVEMREKLAIPEAEWPRAIAELCGLNHIEEAAVLSTCNRMEIYVLALSQHRGVKEVTE 165

Query: 446 WLSRTSGVPLDELRPYLFLLRDRDATHHLMRVSGGLDSLVMGEGQILAQVRQVYKVGQ 619
           W+S+TSG+P+ E+  + FLL ++DAT H+  VS GLDSLV+GEGQILAQV+QV KVGQ
Sbjct: 166 WMSKTSGIPVSEICQHRFLLYNKDATQHIFEVSAGLDSLVLGEGQILAQVKQVVKVGQ 223

>gb|AAD16897.1| glutamyl-tRNA reductase precursor [Glycine max]
          Length = 542

 Score =  204 bits (520), Expect = 6e-52
 Identities = 102/166 (61%), Positives = 130/166 (77%)
 Frame = +2

Query: 122 AAASSTTKLPASHLESSKKALDSLKQQAVNRYAGDKKSSIIAIGLTIHNAPVELREKLAV 301
           A+++S     A+   +S  AL+ LK  A +RY  ++ SS++ IGL++H+ PVE+REKLA+
Sbjct: 57  ASSASDVVADATKKAASVSALEQLKTSAADRYTKER-SSVMVIGLSVHSTPVEMREKLAI 115

Query: 302 PEAEWPRAIEELCQFPHIEEAAVLSTCNRMELYVVGLSWHRGVREVEEWLSRTSGVPLDE 481
           PEAEWPRAI ELC   HIEEAAVLSTCNRME+YVV LS HRGV+EV EW+S+TSG+P+ +
Sbjct: 116 PEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVVALSKHRGVKEVTEWMSKTSGIPVAD 175

Query: 482 LRPYLFLLRDRDATHHLMRVSGGLDSLVMGEGQILAQVRQVYKVGQ 619
           L  + FLL ++DAT HL  VS GLDSLV+GEGQILAQV+QV KVGQ
Sbjct: 176 LCQHQFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQ 221

>gb|AAA19118.1| glutamyl-tRNA reductase
          Length = 543

 Score =  204 bits (519), Expect = 8e-52
 Identities = 106/178 (59%), Positives = 132/178 (73%)
 Frame = +2

Query: 86  SHRAATQTATISAAASSTTKLPASHLESSKKALDSLKQQAVNRYAGDKKSSIIAIGLTIH 265
           + R   Q A    +ASS +   A+ +     AL+ LK  A +RY  ++ SSI+ IGL+IH
Sbjct: 51  TRRGLIQKARCVLSASSDSASNAASIS----ALEQLKNSAADRYTKER-SSIVVIGLSIH 105

Query: 266 NAPVELREKLAVPEAEWPRAIEELCQFPHIEEAAVLSTCNRMELYVVGLSWHRGVREVEE 445
            APVE+REKLA+PEAEWPRAI ELC   HIEEAAVLSTCNRME+YV+ LS HRGV+EV E
Sbjct: 106 TAPVEMREKLAIPEAEWPRAIAELCGLNHIEEAAVLSTCNRMEIYVLALSQHRGVKEVTE 165

Query: 446 WLSRTSGVPLDELRPYLFLLRDRDATHHLMRVSGGLDSLVMGEGQILAQVRQVYKVGQ 619
           W+S TSG+P+ E+  + FLL ++DAT H+  VS GLDSLV+GEGQILAQV+QV KVGQ
Sbjct: 166 WMSNTSGIPVSEICQHRFLLYNKDATQHIFEVSAGLDSLVLGEGQILAQVKQVVKVGQ 223

>ref|NP_172465.1| glutamyl-tRNA reductase 2 (GluTR) (HEMA2) [Arabidopsis thaliana]
           gi|25286554|pir||G86233 hypothetical protein [imported]
           - Arabidopsis thaliana gi|2160186|gb|AAB60749.1|
           Identical to A. thaliana HEMA2 (gb|U27118). [Arabidopsis
           thaliana]
          Length = 530

 Score =  204 bits (518), Expect = 1e-51
 Identities = 100/159 (62%), Positives = 127/159 (78%)
 Frame = +2

Query: 143 KLPASHLESSKKALDSLKQQAVNRYAGDKKSSIIAIGLTIHNAPVELREKLAVPEAEWPR 322
           ++  S+  +S  AL+ LK  A++RY  ++ SSI+ IGL+IH APVE+REKLA+PEAEWPR
Sbjct: 57  EISPSNKAASISALEQLKTSAIDRYTKER-SSIVVIGLSIHTAPVEMREKLAIPEAEWPR 115

Query: 323 AIEELCQFPHIEEAAVLSTCNRMELYVVGLSWHRGVREVEEWLSRTSGVPLDELRPYLFL 502
           AI ELC   HIEEAAVLSTCNRME+YV+ LS HRGV+EV EW+S+TSG+P+ E+  + FL
Sbjct: 116 AIAELCGLNHIEEAAVLSTCNRMEIYVLALSQHRGVKEVTEWMSKTSGIPVSEICQHRFL 175

Query: 503 LRDRDATHHLMRVSGGLDSLVMGEGQILAQVRQVYKVGQ 619
           L ++D T H+  VS GLDSLV+GEGQILAQV+QV KVGQ
Sbjct: 176 LYNKDVTQHIFEVSAGLDSLVLGEGQILAQVKQVVKVGQ 214



EST assemble image


clone accession position
1 HCL050g01_r AV642373 1 447
2 MXL090h05_r BP098288 267 620




Chlamydomonas reinhardtii
Kazusa DNA Research Institute