Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002515A_C01 KCC002515A_c01
(487 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM13845.1| unknown protein [Arabidopsis thaliana] 36 0.21
ref|NP_194968.2| expressed protein [Arabidopsis thaliana] 36 0.21
ref|XP_299302.2| hypothetical protein XP_299302 [Homo sapiens] 36 0.21
pir||T05352 hypothetical protein F8B4.120 - Arabidopsis thaliana... 36 0.21
pir||T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest ... 35 0.37
>gb|AAM13845.1| unknown protein [Arabidopsis thaliana]
Length = 837
Score = 36.2 bits (82), Expect = 0.21
Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 7/135 (5%)
Frame = +2
Query: 65 SPGQASRKFVHSS**PAKS---QVPASLIRSSLRPSAWHPAIRMRRRARRPEFRGGRTQI 235
SP + SR+ + S P +S V S +RSS + + P RRR R R R +
Sbjct: 550 SPTRLSRRSLSRS--PIRSPRKSVSRSPVRSSRKSVSRSPVRSSRRRISRSPVRSSRKSV 607
Query: 236 HSAAV-LSLQGMIHSTLPHPQRGILSVRRKYKSSRYTSPSPAEATSESRGVPASAPARNR 412
+ + LS + + S + +R I R + R S SP A S + P R R
Sbjct: 608 SRSPIRLSRRSISRSPIRLSRRSI--SRSPVRGRRRISRSPVPARRRSVRPRSPPPDRRR 665
Query: 413 RLTR---PTG*IPRG 448
L+R P G I RG
Sbjct: 666 SLSRSASPNGRIRRG 680
>ref|NP_194968.2| expressed protein [Arabidopsis thaliana]
Length = 837
Score = 36.2 bits (82), Expect = 0.21
Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 7/135 (5%)
Frame = +2
Query: 65 SPGQASRKFVHSS**PAKS---QVPASLIRSSLRPSAWHPAIRMRRRARRPEFRGGRTQI 235
SP + SR+ + S P +S V S +RSS + + P RRR R R R +
Sbjct: 550 SPTRLSRRSLSRS--PIRSPRKSVSRSPVRSSRKSVSRSPVRSSRRRISRSPVRSSRKSV 607
Query: 236 HSAAV-LSLQGMIHSTLPHPQRGILSVRRKYKSSRYTSPSPAEATSESRGVPASAPARNR 412
+ + LS + + S + +R I R + R S SP A S + P R R
Sbjct: 608 SRSPIRLSRRSISRSPIRLSRRSI--SRSPVRGRRRISRSPVPARRRSVRPRSPPPDRRR 665
Query: 413 RLTR---PTG*IPRG 448
L+R P G I RG
Sbjct: 666 SLSRSASPNGRIRRG 680
>ref|XP_299302.2| hypothetical protein XP_299302 [Homo sapiens]
Length = 258
Score = 36.2 bits (82), Expect = 0.21
Identities = 24/67 (35%), Positives = 32/67 (46%), Gaps = 4/67 (5%)
Frame = +3
Query: 42 RPTRNPFPHPAKPAENLFT----PLSNLPSRRYLPHSSAHLFAPVPGTQPSECAVELAAP 209
R +RN HP PA + T PLS PS LP ++AH +P P P + P
Sbjct: 91 RHSRNRPLHPQPPAGHSCTRTRAPLSAGPSSPALPGAAAHAHSPAPRDPPPSNSRSAPKP 150
Query: 210 SFAAAAR 230
SF+ + R
Sbjct: 151 SFSLSPR 157
>pir||T05352 hypothetical protein F8B4.120 - Arabidopsis thaliana
gi|4049344|emb|CAA22569.1| putative protein [Arabidopsis
thaliana] gi|7270146|emb|CAB79959.1| putative protein
[Arabidopsis thaliana]
Length = 857
Score = 36.2 bits (82), Expect = 0.21
Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 7/135 (5%)
Frame = +2
Query: 65 SPGQASRKFVHSS**PAKS---QVPASLIRSSLRPSAWHPAIRMRRRARRPEFRGGRTQI 235
SP + SR+ + S P +S V S +RSS + + P RRR R R R +
Sbjct: 567 SPTRLSRRSLSRS--PIRSPRKSVSRSPVRSSRKSVSRSPVRSSRRRISRSPVRSSRKSV 624
Query: 236 HSAAV-LSLQGMIHSTLPHPQRGILSVRRKYKSSRYTSPSPAEATSESRGVPASAPARNR 412
+ + LS + + S + +R I R + R S SP A S + P R R
Sbjct: 625 SRSPIRLSRRSISRSPIRLSRRSI--SRSPVRGRRRISRSPVPARRRSVRPRSPPPDRRR 682
Query: 413 RLTR---PTG*IPRG 448
L+R P G I RG
Sbjct: 683 SLSRSASPNGRIRRG 697
>pir||T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain -
Mastigamoeba invertens (fragment)
gi|3511287|gb|AAC62246.1| DNA-dependent RNA polymerase II
largest subunit [Mastigamoeba invertens]
Length = 1690
Score = 35.4 bits (80), Expect = 0.37
Identities = 28/95 (29%), Positives = 45/95 (46%)
Frame = +3
Query: 54 NPFPHPAKPAENLFTPLSNLPSRRYLPHSSAHLFAPVPGTQPSECAVELAAPSFAAAARR 233
+P PA PA + +P + S Y P S A+ A P P+ A A+P+++ A+
Sbjct: 1594 SPAYSPASPAYSPASPAYSPASPAYSPASPAYSPAS-PAYSPASPAYSPASPAYSPASPA 1652
Query: 234 FTLLLF*ACRV*YTPHSPIRNGASSAYDASTKAHD 338
+ Y+P SP + AS AY ++ A+D
Sbjct: 1653 YG-----PASPAYSPASPAYSPASPAYSPASPAYD 1682
